Wall clock time and date at job start Tue Mar 31 2020 07:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38135 * 120.48323 * 2 1 4 4 N 1.31827 * 120.91768 * 180.02562 * 3 2 1 5 5 C 1.31904 * 122.04039 * 359.97273 * 4 3 2 6 6 Cl 1.73606 * 119.56534 * 180.02562 * 5 4 3 7 7 C 1.38311 * 120.87117 * 0.02562 * 5 4 3 8 8 C 1.39822 * 118.98270 * 0.23344 * 7 5 4 9 9 C 1.48044 * 120.92170 * 179.74909 * 8 7 5 10 10 O 1.21426 * 120.00046 * 186.71744 * 9 8 7 11 11 O 1.34668 * 119.99865 * 6.71769 * 9 8 7 12 12 C 1.45202 * 116.99904 * 184.97398 * 11 9 8 13 13 C 1.53008 * 109.47093 * 175.12952 * 12 11 9 14 14 C 1.50693 * 115.54771 * 185.44022 * 13 12 11 15 15 H 1.08005 * 120.00376 * 144.57571 * 14 13 12 16 16 C 1.37880 * 120.00380 * 324.56590 * 14 13 12 17 17 N 1.31513 * 120.00272 * 167.70362 * 16 14 13 18 18 Si 1.86802 * 119.99650 * 347.71064 * 16 14 13 19 19 H 1.48506 * 109.47234 * 95.51612 * 18 16 14 20 20 H 1.48499 * 109.47157 * 215.50970 * 18 16 14 21 21 H 1.48494 * 109.47475 * 335.51346 * 18 16 14 22 22 C 1.52994 * 117.49814 * 39.76880 * 13 12 11 23 23 C 1.52998 * 117.49723 * 331.10786 * 13 12 11 24 24 H 1.09000 * 109.47105 * 96.58328 * 1 2 3 25 25 H 1.09003 * 109.46916 * 216.58243 * 1 2 3 26 26 H 1.09002 * 109.47447 * 336.58539 * 1 2 3 27 27 H 1.08003 * 119.54661 * 359.97438 * 3 2 1 28 28 H 1.07995 * 120.50993 * 179.97438 * 7 5 4 29 29 H 1.09003 * 109.47278 * 295.12836 * 12 11 9 30 30 H 1.08997 * 109.47271 * 55.13308 * 12 11 9 31 31 H 0.97002 * 120.00145 * 179.97438 * 17 16 14 32 32 H 1.08999 * 117.49996 * 359.97438 * 22 13 12 33 33 H 1.08994 * 117.49977 * 145.02425 * 22 13 12 34 34 H 1.08995 * 117.49773 * 214.98090 * 23 13 12 35 35 H 1.09000 * 117.50126 * 359.97219 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1904 0.0000 4 7 3.5259 1.2004 -0.0005 5 6 4.2342 0.0876 -0.0005 6 17 5.9680 0.1757 -0.0005 7 6 3.6137 -1.1485 -0.0005 8 6 2.2166 -1.2053 -0.0055 9 6 1.5082 -2.5052 -0.0112 10 8 0.3010 -2.5382 -0.1385 11 8 2.2025 -3.6511 0.1247 12 6 1.4583 -4.8916 -0.0010 13 6 2.4260 -6.0752 0.0606 14 6 1.8125 -7.4296 -0.1849 15 1 2.3726 -8.1890 -0.7103 16 6 0.5362 -7.6995 0.2613 17 7 -0.0913 -8.7782 -0.1538 18 14 -0.3019 -6.5328 1.4555 19 1 -1.1597 -5.5840 0.7010 20 1 -1.1397 -7.3115 2.4026 21 1 0.7271 -5.7755 2.2122 22 6 3.5796 -5.9932 1.0622 23 6 3.8547 -5.8462 -0.4365 24 1 -0.3633 -0.1178 -1.0209 25 1 -0.3633 -0.8252 0.6125 26 1 -0.3634 0.9430 0.4084 27 1 1.6682 2.1260 -0.0004 28 1 4.1993 -2.0559 -0.0009 29 1 0.7387 -4.9678 0.8141 30 1 0.9301 -4.9034 -0.9544 31 1 -0.9891 -8.9682 0.1605 32 1 3.6495 -5.0959 1.6769 33 1 3.8951 -6.9189 1.5432 34 1 4.3511 -6.6753 -0.9406 35 1 4.1053 -4.8525 -0.8077 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334893901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:17 Heat of formation + Delta-G solvation = -33.978633 kcal Electronic energy + Delta-G solvation = -21218.729178 eV Core-core repulsion = 17822.686717 eV Total energy + Delta-G solvation = -3396.042461 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23673 -40.99304 -38.98470 -37.80012 -37.12267 -34.68146 -34.44331 -33.45209 -29.80156 -28.57000 -27.45510 -26.02265 -23.71951 -23.11364 -22.45177 -21.14204 -19.69693 -18.99492 -18.17451 -18.02748 -17.52990 -16.70801 -16.56776 -16.41585 -15.89608 -15.58058 -15.19917 -14.91269 -14.71033 -14.49969 -14.06410 -13.70708 -13.56694 -13.08184 -12.96969 -12.76854 -12.63224 -12.41548 -12.38957 -12.11533 -11.98879 -11.70795 -11.48716 -11.29575 -11.19163 -10.83702 -10.68139 -10.31842 -9.99014 -8.46400 -6.42915 -0.80206 -0.33517 0.61913 1.19682 1.20378 1.23048 1.27766 1.38761 2.16734 2.36763 2.72220 3.08929 3.33413 3.39333 3.47031 3.56799 3.74539 3.86927 3.96679 4.10547 4.20794 4.37609 4.45948 4.49652 4.70330 4.71853 4.89496 4.91496 4.94587 5.09650 5.15838 5.24588 5.41618 5.53120 5.55892 6.17312 6.39144 6.41520 6.57114 7.15742 8.69992 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019975 B = 0.004733 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.415495 B = 5913.901247 C = 7061.659734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C 0.125 3.875 4 N -0.464 5.464 5 C 0.149 3.851 6 Cl -0.016 7.016 7 C -0.094 4.094 8 C -0.082 4.082 9 C 0.500 3.500 10 O -0.511 6.511 11 O -0.339 6.339 12 C 0.098 3.902 13 C -0.033 4.033 14 C -0.487 4.487 15 H 0.051 0.949 16 C 0.031 3.969 17 N -0.928 5.928 18 Si 0.925 3.075 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.244 1.244 22 C -0.183 4.183 23 C -0.157 4.157 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.108 0.892 27 H 0.217 0.783 28 H 0.167 0.833 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.272 0.728 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 22.669 1.703 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.033 4.033 4 N -0.175 5.175 5 C -0.013 4.013 6 Cl 0.013 6.987 7 C -0.115 4.115 8 C -0.091 4.091 9 C 0.344 3.656 10 O -0.401 6.401 11 O -0.255 6.255 12 C 0.026 3.974 13 C -0.034 4.034 14 C -0.525 4.525 15 H 0.069 0.931 16 C -0.169 4.169 17 N -0.567 5.567 18 Si 0.753 3.247 19 H -0.200 1.200 20 H -0.214 1.214 21 H -0.169 1.169 22 C -0.221 4.221 23 C -0.194 4.194 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.233 0.767 28 H 0.185 0.815 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.956 23.255 1.679 24.065 hybrid contribution -0.963 -1.255 0.328 1.616 sum 4.993 22.000 2.007 22.649 Atomic orbital electron populations 1.21065 0.87398 1.04927 1.04131 1.21488 0.99612 0.91653 0.94084 1.23261 0.87180 0.98542 0.94295 1.66981 1.09517 1.30574 1.10427 1.21553 0.88504 0.89467 1.01799 1.98424 1.05268 1.98563 1.96457 1.22236 0.93498 0.99303 0.96464 1.19338 0.93440 0.90424 1.05877 1.21408 0.85731 0.85232 0.73182 1.90814 1.15677 1.88031 1.45547 1.86469 1.42757 1.14618 1.81652 1.23186 0.94085 0.79194 1.00954 1.19260 0.88287 0.91189 1.04618 1.20442 0.99846 0.95636 1.36542 0.93063 1.25659 0.97474 0.96779 0.96950 1.70002 1.13797 1.28961 1.43891 0.86294 0.79046 0.78666 0.80679 1.19976 1.21363 1.16879 1.23104 1.04941 1.01810 0.92215 1.22817 0.97808 1.02030 0.96703 0.89619 0.91155 0.87366 0.76658 0.81539 0.92693 0.91574 0.91891 0.88896 0.89911 0.89918 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.06 8.80 71.24 0.63 -1.44 16 2 C -0.07 -1.29 5.93 -19.49 -0.12 -1.40 16 3 C 0.13 1.95 10.83 84.67 0.92 2.86 16 4 N -0.46 -9.35 10.31 -186.84 -1.93 -11.28 16 5 C 0.15 3.19 7.27 84.70 0.62 3.81 16 6 Cl -0.02 -0.31 29.10 -2.72 -0.08 -0.39 16 7 C -0.09 -2.13 9.47 22.67 0.21 -1.91 16 8 C -0.08 -2.05 5.91 -19.90 -0.12 -2.17 16 9 C 0.50 16.29 7.85 70.42 0.55 16.84 16 10 O -0.51 -18.73 13.34 20.08 0.27 -18.47 16 11 O -0.34 -12.14 7.87 -55.78 -0.44 -12.57 16 12 C 0.10 4.25 4.15 71.98 0.30 4.55 16 13 C -0.03 -1.48 1.85 -52.93 -0.10 -1.58 16 14 C -0.49 -27.04 9.57 25.60 0.25 -26.80 16 15 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 16 C 0.03 1.78 5.42 84.66 0.46 2.24 16 17 N -0.93 -56.16 13.96 21.45 0.30 -55.86 16 18 Si 0.93 44.27 24.21 68.60 1.66 45.93 16 19 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.24 -10.95 6.38 99.48 0.63 -10.32 16 22 C -0.18 -7.16 9.67 30.62 0.30 -6.87 16 23 C -0.16 -5.93 9.63 30.62 0.29 -5.64 16 24 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.07 1.66 6.02 -2.39 -0.01 1.64 16 26 H 0.11 1.04 8.05 -2.39 -0.02 1.02 16 27 H 0.22 1.45 8.06 -2.91 -0.02 1.43 16 28 H 0.17 3.55 7.73 -2.91 -0.02 3.52 16 29 H 0.06 2.51 2.61 -2.39 -0.01 2.51 16 30 H 0.07 2.97 8.10 -2.39 -0.02 2.96 16 31 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.09 3.27 7.84 -2.39 -0.02 3.25 16 33 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 34 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.10 3.41 7.49 -2.39 -0.02 3.39 16 Total: -1.00 -65.24 312.41 5.03 -60.21 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.05 Total: 9.92 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.19 Total: -17.50 kcal Atomic # 7 Polarization: -65.52 SS G_CDS: -1.63 Total: -67.14 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.17 Total: -31.04 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.66 Total: 45.93 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -65.24 5.03 -60.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334893901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.231 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds