Wall clock time and date at job start Tue Mar 31 2020 07:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38556 * 120.74331 * 2 1 4 4 C 1.38749 * 119.34528 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.56331 * 180.02562 * 4 3 2 6 6 N 1.31602 * 120.87418 * 0.02562 * 4 3 2 7 7 C 1.32777 * 121.61941 * 359.97438 * 6 4 3 8 8 C 1.48072 * 119.71672 * 179.97438 * 7 6 4 9 9 O 1.21437 * 119.99679 * 180.02562 * 8 7 6 10 10 O 1.34673 * 120.00078 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99995 * 177.70632 * 10 8 7 12 12 C 1.50700 * 112.84796 * 65.17425 * 11 10 8 13 13 H 1.08004 * 119.99626 * 242.53049 * 12 11 10 14 14 C 1.37879 * 120.00166 * 62.53455 * 12 11 10 15 15 N 1.31515 * 119.99858 * 353.76114 * 14 12 11 16 16 Si 1.86800 * 119.99826 * 173.76784 * 14 12 11 17 17 H 1.48494 * 109.47057 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47069 * 119.99706 * 16 14 12 19 19 H 1.48497 * 109.46717 * 239.99715 * 16 14 12 20 20 C 1.53775 * 113.61148 * 293.97482 * 11 10 8 21 21 C 1.53953 * 87.02092 * 220.04730 * 20 11 10 22 22 C 1.53783 * 113.61082 * 196.36799 * 11 10 8 23 23 C 1.38624 * 120.74368 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46438 * 269.97047 * 1 2 3 25 25 H 1.08993 * 109.47257 * 29.96896 * 1 2 3 26 26 H 1.08997 * 109.46846 * 149.97477 * 1 2 3 27 27 H 1.07996 * 120.33311 * 0.05110 * 3 2 1 28 28 H 0.96995 * 119.99634 * 185.01446 * 15 14 12 29 29 H 1.09001 * 113.62036 * 334.57324 * 20 11 10 30 30 H 1.09006 * 113.61162 * 105.47134 * 20 11 10 31 31 H 1.08994 * 113.53931 * 270.81882 * 21 20 11 32 32 H 1.09003 * 113.74417 * 139.94634 * 21 20 11 33 33 H 1.08993 * 113.61625 * 254.52532 * 22 11 10 34 34 H 1.09001 * 113.61416 * 25.34943 * 22 11 10 35 35 H 1.08004 * 120.45948 * 359.95329 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2154 1.1908 0.0000 4 6 3.6025 1.1570 -0.0005 5 17 4.4956 2.6456 0.0001 6 7 4.2500 0.0113 -0.0016 7 6 3.6082 -1.1510 -0.0016 8 6 4.3792 -2.4152 -0.0033 9 8 3.7975 -3.4811 -0.0039 10 8 5.7256 -2.3828 -0.0043 11 6 6.4158 -3.6594 0.0457 12 6 6.1811 -4.5000 -1.1828 13 1 5.6851 -5.4556 -1.0966 14 6 6.5997 -4.0494 -2.4168 15 7 7.0919 -2.8362 -2.5415 16 14 6.4674 -5.1620 -3.9115 17 1 5.8850 -6.4668 -3.5073 18 1 5.5939 -4.5232 -4.9284 19 1 7.8188 -5.3806 -4.4868 20 6 6.2045 -4.4224 1.3640 21 6 7.6919 -4.8117 1.2837 22 6 7.8979 -3.5433 0.4389 23 6 2.2157 -1.1914 -0.0005 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6931 2.1361 0.0008 28 1 7.3185 -2.4928 -3.4198 29 1 5.9672 -3.7765 2.2093 30 1 5.5250 -5.2700 1.2738 31 1 7.8709 -5.7359 0.7344 32 1 8.2052 -4.7843 2.2449 33 1 8.5835 -3.6820 -0.3970 34 1 8.1247 -2.6557 1.0295 35 1 1.6955 -2.1379 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345949636.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:42 Heat of formation + Delta-G solvation = -34.030393 kcal Electronic energy + Delta-G solvation = -21494.812085 eV Core-core repulsion = 18098.767380 eV Total energy + Delta-G solvation = -3396.044705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.42992 -39.01897 -37.04193 -36.53174 -34.37077 -33.93662 -32.28305 -31.11770 -28.03009 -26.30319 -24.89268 -24.52492 -22.85442 -22.53022 -20.13615 -18.55288 -17.49219 -16.81523 -16.31509 -15.88543 -15.16561 -15.07271 -14.97363 -14.67197 -14.06430 -13.77892 -13.27138 -13.21282 -12.99673 -12.73581 -12.32261 -11.87171 -11.57817 -11.52177 -11.23671 -11.08155 -11.01714 -10.91378 -10.46636 -10.25110 -9.95270 -9.86844 -9.80030 -9.62964 -9.33591 -8.96470 -8.80174 -8.56422 -8.50704 -6.08514 -4.22227 0.66383 1.08570 1.82851 3.08952 3.24684 3.33871 3.39219 3.62783 4.11066 4.35393 4.36119 4.78880 4.87076 4.87574 5.03895 5.21955 5.34121 5.48090 5.57764 5.66139 5.75783 5.80244 5.92213 6.04007 6.18019 6.36423 6.48665 6.53769 6.67127 6.92190 7.12834 7.30903 7.53842 7.69763 7.76694 7.87902 8.29052 8.81035 9.11337 9.47743 10.94981 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.005087 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.828130 B = 5502.583105 C = 5636.326584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.042 4.042 3 C -0.145 4.145 4 C 0.174 3.826 5 Cl -0.032 7.032 6 N -0.426 5.426 7 C 0.137 3.863 8 C 0.517 3.483 9 O -0.497 6.497 10 O -0.313 6.313 11 C 0.235 3.765 12 C -0.517 4.517 13 H 0.070 0.930 14 C 0.075 3.925 15 N -0.854 5.854 16 Si 0.892 3.108 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.281 1.281 20 C -0.160 4.160 21 C -0.131 4.131 22 C -0.106 4.106 23 C -0.118 4.118 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.263 0.737 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 8.182 5.742 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.050 4.050 3 C -0.166 4.166 4 C 0.007 3.993 5 Cl -0.004 7.004 6 N -0.140 5.140 7 C 0.000 4.000 8 C 0.358 3.642 9 O -0.386 6.386 10 O -0.226 6.226 11 C 0.202 3.798 12 C -0.554 4.554 13 H 0.088 0.912 14 C -0.132 4.132 15 N -0.489 5.489 16 Si 0.719 3.281 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.207 1.207 20 C -0.198 4.198 21 C -0.168 4.168 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.164 0.836 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.979 8.033 5.623 13.296 hybrid contribution -0.787 -0.276 -1.012 1.311 sum -9.766 7.757 4.612 13.297 Atomic orbital electron populations 1.20819 0.89009 1.03831 1.03253 1.20243 0.97256 0.91721 0.95769 1.21869 0.92468 0.99776 1.02459 1.21633 0.88674 0.88818 1.00204 1.98398 1.77009 1.28430 1.96527 1.67091 1.40796 0.96794 1.09295 1.20772 0.90669 0.90579 0.97990 1.20186 0.83599 0.86146 0.74308 1.90751 1.71820 1.30163 1.45880 1.86694 1.16108 1.40136 1.79710 1.21341 0.88211 0.78167 0.92102 1.20974 1.39260 1.04513 0.90654 0.91224 1.25112 0.93785 0.95120 0.99150 1.70066 1.40297 1.14920 1.23652 0.86529 0.77817 0.81204 0.82544 1.19391 1.20943 1.20656 1.23570 0.96612 1.00731 0.98839 1.22561 0.96488 0.99068 0.98704 1.22891 0.97631 0.95390 0.98501 1.22141 0.93586 0.99955 0.98153 0.90108 0.90673 0.90378 0.83566 0.92703 0.92210 0.91706 0.90185 0.92934 0.90684 0.92102 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.06 36.01 0.36 -0.52 16 2 C -0.04 -0.51 5.91 -104.36 -0.62 -1.13 16 3 C -0.14 -1.80 9.59 -39.27 -0.38 -2.17 16 4 C 0.17 2.79 7.27 -17.46 -0.13 2.66 16 5 Cl -0.03 -0.46 29.10 -51.86 -1.51 -1.96 16 6 N -0.43 -8.58 10.10 -6.95 -0.07 -8.65 16 7 C 0.14 2.78 6.75 -83.03 -0.56 2.22 16 8 C 0.52 12.56 7.51 34.77 0.26 12.83 16 9 O -0.50 -12.55 14.81 -19.22 -0.28 -12.83 16 10 O -0.31 -8.32 9.57 -40.42 -0.39 -8.71 16 11 C 0.24 6.07 0.47 -90.96 -0.04 6.02 16 12 C -0.52 -14.37 7.08 -34.44 -0.24 -14.62 16 13 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 14 C 0.08 2.09 5.30 -17.82 -0.09 1.99 16 15 N -0.85 -24.64 12.79 55.43 0.71 -23.93 16 16 Si 0.89 21.45 29.55 -169.99 -5.02 16.42 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.16 -3.57 6.57 -25.83 -0.17 -3.74 16 21 C -0.13 -2.66 7.81 -25.82 -0.20 -2.86 16 22 C -0.11 -2.50 7.28 -25.91 -0.19 -2.69 16 23 C -0.12 -1.86 9.34 -39.04 -0.36 -2.23 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.06 1.47 8.09 -51.93 -0.42 1.05 16 31 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.87 7.98 -51.93 -0.41 1.46 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.16 2.28 7.64 -52.48 -0.40 1.87 16 LS Contribution 322.98 15.07 4.87 4.87 Total: -1.00 -31.98 322.98 -8.22 -40.19 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.16 Total: -1.17 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.36 Total: -4.23 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.64 Total: -32.58 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.67 Total: -21.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.98 -8.22 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345949636.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.164 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds