Wall clock time and date at job start Tue Mar 31 2020 07:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38556 * 120.74331 * 2 1 4 4 C 1.38749 * 119.34528 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.56331 * 180.02562 * 4 3 2 6 6 N 1.31602 * 120.87418 * 0.02562 * 4 3 2 7 7 C 1.32777 * 121.61941 * 359.97438 * 6 4 3 8 8 C 1.48072 * 119.71672 * 179.97438 * 7 6 4 9 9 O 1.21437 * 119.99679 * 180.02562 * 8 7 6 10 10 O 1.34673 * 120.00078 * 0.02562 * 8 7 6 11 11 C 1.45206 * 116.99995 * 177.70632 * 10 8 7 12 12 C 1.50700 * 112.84796 * 65.17425 * 11 10 8 13 13 H 1.08004 * 119.99626 * 242.53049 * 12 11 10 14 14 C 1.37879 * 120.00166 * 62.53455 * 12 11 10 15 15 N 1.31515 * 119.99858 * 353.76114 * 14 12 11 16 16 Si 1.86800 * 119.99826 * 173.76784 * 14 12 11 17 17 H 1.48494 * 109.47057 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47069 * 119.99706 * 16 14 12 19 19 H 1.48497 * 109.46717 * 239.99715 * 16 14 12 20 20 C 1.53775 * 113.61148 * 293.97482 * 11 10 8 21 21 C 1.53953 * 87.02092 * 220.04730 * 20 11 10 22 22 C 1.53783 * 113.61082 * 196.36799 * 11 10 8 23 23 C 1.38624 * 120.74368 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46438 * 269.97047 * 1 2 3 25 25 H 1.08993 * 109.47257 * 29.96896 * 1 2 3 26 26 H 1.08997 * 109.46846 * 149.97477 * 1 2 3 27 27 H 1.07996 * 120.33311 * 0.05110 * 3 2 1 28 28 H 0.96995 * 119.99634 * 185.01446 * 15 14 12 29 29 H 1.09001 * 113.62036 * 334.57324 * 20 11 10 30 30 H 1.09006 * 113.61162 * 105.47134 * 20 11 10 31 31 H 1.08994 * 113.53931 * 270.81882 * 21 20 11 32 32 H 1.09003 * 113.74417 * 139.94634 * 21 20 11 33 33 H 1.08993 * 113.61625 * 254.52532 * 22 11 10 34 34 H 1.09001 * 113.61416 * 25.34943 * 22 11 10 35 35 H 1.08004 * 120.45948 * 359.95329 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2154 1.1908 0.0000 4 6 3.6025 1.1570 -0.0005 5 17 4.4956 2.6456 0.0001 6 7 4.2500 0.0113 -0.0016 7 6 3.6082 -1.1510 -0.0016 8 6 4.3792 -2.4152 -0.0033 9 8 3.7975 -3.4811 -0.0039 10 8 5.7256 -2.3828 -0.0043 11 6 6.4158 -3.6594 0.0457 12 6 6.1811 -4.5000 -1.1828 13 1 5.6851 -5.4556 -1.0966 14 6 6.5997 -4.0494 -2.4168 15 7 7.0919 -2.8362 -2.5415 16 14 6.4674 -5.1620 -3.9115 17 1 5.8850 -6.4668 -3.5073 18 1 5.5939 -4.5232 -4.9284 19 1 7.8188 -5.3806 -4.4868 20 6 6.2045 -4.4224 1.3640 21 6 7.6919 -4.8117 1.2837 22 6 7.8979 -3.5433 0.4389 23 6 2.2157 -1.1914 -0.0005 24 1 -0.3632 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6931 2.1361 0.0008 28 1 7.3185 -2.4928 -3.4198 29 1 5.9672 -3.7765 2.2093 30 1 5.5250 -5.2700 1.2738 31 1 7.8709 -5.7359 0.7344 32 1 8.2052 -4.7843 2.2449 33 1 8.5835 -3.6820 -0.3970 34 1 8.1247 -2.6557 1.0295 35 1 1.6955 -2.1379 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345949636.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:41 Heat of formation + Delta-G solvation = -52.793801 kcal Electronic energy + Delta-G solvation = -21495.625728 eV Core-core repulsion = 18098.767380 eV Total energy + Delta-G solvation = -3396.858348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79962 -40.75855 -38.82432 -37.71189 -36.15249 -35.14993 -34.39642 -32.39766 -28.90781 -28.30613 -26.51487 -26.32776 -24.48888 -23.80890 -21.68966 -20.49107 -19.16278 -18.24673 -17.89038 -17.07599 -16.96960 -16.91665 -16.44053 -16.35683 -15.75989 -15.37889 -14.96056 -14.23575 -14.02281 -13.93390 -13.57474 -13.51496 -13.03661 -12.95308 -12.88564 -12.79594 -12.64556 -12.36499 -12.29281 -12.11421 -11.83208 -11.70261 -11.55469 -10.85838 -10.80281 -10.68740 -10.52860 -10.46309 -10.19168 -8.19731 -6.39873 -0.61566 -0.05974 0.65669 1.32529 1.35161 1.47622 1.56978 2.03463 2.34280 2.61439 3.04935 3.24070 3.66885 3.73087 3.81756 3.97431 3.99640 4.04532 4.19543 4.33162 4.50265 4.62337 4.69240 4.82515 4.83961 4.90603 5.08037 5.13270 5.14380 5.35214 5.39329 5.41339 5.60496 5.72111 5.90993 6.26956 6.46027 6.66224 7.20350 7.36156 8.83489 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.005087 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.828130 B = 5502.583105 C = 5636.326584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.025 4.025 3 C -0.120 4.120 4 C 0.157 3.843 5 Cl -0.023 7.023 6 N -0.472 5.472 7 C 0.097 3.903 8 C 0.507 3.493 9 O -0.523 6.523 10 O -0.335 6.335 11 C 0.208 3.792 12 C -0.529 4.529 13 H 0.055 0.945 14 C 0.030 3.970 15 N -0.885 5.885 16 Si 0.952 3.048 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.152 4.152 21 C -0.108 4.108 22 C -0.108 4.108 23 C -0.114 4.114 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.194 0.806 28 H 0.263 0.737 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.137 9.238 6.126 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.033 4.033 3 C -0.140 4.140 4 C -0.010 4.010 5 Cl 0.006 6.994 6 N -0.187 5.187 7 C -0.039 4.039 8 C 0.350 3.650 9 O -0.413 6.413 10 O -0.250 6.250 11 C 0.174 3.826 12 C -0.566 4.566 13 H 0.073 0.927 14 C -0.174 4.174 15 N -0.522 5.522 16 Si 0.777 3.223 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.190 4.190 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.135 4.135 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.102 0.898 27 H 0.211 0.789 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.092 9.083 6.017 15.548 hybrid contribution -0.237 -0.469 -1.089 1.210 sum -11.329 8.614 4.927 15.061 Atomic orbital electron populations 1.20993 0.84989 1.05546 1.05100 1.20778 0.99612 0.89984 0.92962 1.22395 0.90851 1.01829 0.98896 1.22047 0.90300 0.88041 1.00650 1.98395 1.77268 1.27262 1.96517 1.66830 1.42746 0.97936 1.11156 1.20347 0.91793 0.89139 1.02574 1.20945 0.83016 0.87845 0.73207 1.90694 1.71868 1.31562 1.47196 1.86659 1.17771 1.40255 1.80279 1.21619 0.89583 0.78467 0.92918 1.21102 1.39102 1.04310 0.92072 0.92704 1.25819 0.93514 0.96290 1.01760 1.70183 1.41502 1.16376 1.24095 0.85606 0.78181 0.79423 0.79138 1.19032 1.20924 1.19452 1.23487 0.97979 1.00035 0.97514 1.22480 0.94869 0.97305 0.99851 1.22875 0.95914 0.97377 0.98401 1.22311 0.91794 1.01934 0.97430 0.87911 0.87898 0.89802 0.78915 0.92811 0.91243 0.92608 0.90148 0.89000 0.92984 0.91569 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.06 71.24 0.72 -0.47 16 2 C -0.03 -0.54 5.91 -19.69 -0.12 -0.65 16 3 C -0.12 -2.55 9.59 22.47 0.22 -2.34 16 4 C 0.16 4.86 7.27 84.85 0.62 5.48 16 5 Cl -0.02 -0.62 29.10 -2.72 -0.08 -0.70 16 6 N -0.47 -19.40 10.10 -175.89 -1.78 -21.18 16 7 C 0.10 4.04 6.75 41.87 0.28 4.32 16 8 C 0.51 25.80 7.51 70.43 0.53 26.33 16 9 O -0.52 -27.58 14.81 20.04 0.30 -27.28 16 10 O -0.34 -18.68 9.57 -55.82 -0.53 -19.22 16 11 C 0.21 11.08 0.47 -11.02 -0.01 11.07 16 12 C -0.53 -30.42 7.08 25.60 0.18 -30.23 16 13 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 14 C 0.03 1.69 5.30 84.66 0.45 2.14 16 15 N -0.89 -52.87 12.79 21.45 0.27 -52.59 16 16 Si 0.95 45.00 29.55 68.60 2.03 47.02 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.15 -6.91 6.57 31.18 0.20 -6.71 16 21 C -0.11 -4.31 7.81 31.18 0.24 -4.06 16 22 C -0.11 -5.17 7.28 31.12 0.23 -4.95 16 23 C -0.11 -3.53 9.34 22.62 0.21 -3.32 16 24 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 26 H 0.08 0.88 8.10 -2.39 -0.02 0.87 16 27 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 28 H 0.26 14.93 8.32 -92.71 -0.77 14.16 16 29 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.06 2.58 8.09 -2.38 -0.02 2.56 16 31 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.05 2.68 7.98 -2.39 -0.02 2.67 16 34 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.16 4.65 7.64 -2.91 -0.02 4.63 16 Total: -1.00 -74.21 322.98 5.07 -69.14 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.11 Total: 8.19 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 3.75 Total: -3.38 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -1.50 Total: -73.77 kcal Atomic # 8 Polarization: -46.26 SS G_CDS: -0.24 Total: -46.50 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -74.21 5.07 -69.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345949636.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.344 kcal (2) G-P(sol) polarization free energy of solvation -74.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds