Wall clock time and date at job start Tue Mar 31 2020 07:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47083 * 239.99951 * 3 2 1 5 5 H 1.48500 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47024 * 120.00002 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99974 * 163.08661 * 7 2 1 9 9 N 1.36936 * 120.00005 * 343.09585 * 7 2 1 10 10 C 1.46928 * 120.63013 * 151.82709 * 9 7 2 11 11 C 1.53196 * 108.89135 * 126.29699 * 10 9 7 12 12 C 1.53349 * 109.15353 * 54.57497 * 11 10 9 13 13 O 1.45194 * 109.42079 * 178.67344 * 12 11 10 14 14 C 1.34227 * 116.99947 * 270.12935 * 13 12 11 15 15 O 1.20823 * 120.00463 * 359.97438 * 14 13 12 16 16 C 1.50707 * 119.99932 * 180.02562 * 14 13 12 17 17 S 1.81393 * 109.47229 * 180.02562 * 16 14 13 18 18 C 1.81404 * 103.00047 * 179.97438 * 17 16 14 19 19 F 1.39889 * 109.47203 * 300.00120 * 18 17 16 20 20 F 1.39903 * 109.46688 * 60.00166 * 18 17 16 21 21 C 1.53044 * 109.60552 * 298.71437 * 12 11 10 22 22 C 1.46924 * 120.63127 * 331.80020 * 9 7 2 23 23 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.58355 * 246.14871 * 10 9 7 25 25 H 1.08994 * 109.59076 * 6.43731 * 10 9 7 26 26 H 1.08998 * 109.49426 * 174.65878 * 11 10 9 27 27 H 1.09000 * 109.49457 * 294.75312 * 11 10 9 28 28 H 1.09003 * 109.42058 * 58.74791 * 12 11 10 29 29 H 1.09007 * 109.46889 * 299.99979 * 16 14 13 30 30 H 1.09006 * 109.47056 * 59.99541 * 16 14 13 31 31 H 1.08994 * 109.47099 * 179.97438 * 18 17 16 32 32 H 1.08992 * 109.49619 * 301.41603 * 21 12 11 33 33 H 1.08999 * 109.52313 * 181.33616 * 21 12 11 34 34 H 1.09000 * 109.58664 * 353.42162 * 22 9 7 35 35 H 1.08996 * 109.58580 * 113.70091 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2716 9 7 1.3699 -2.3623 0.3459 10 6 1.8139 -3.6529 -0.1982 11 6 2.0707 -4.6187 0.9629 12 6 0.8131 -4.7007 1.8366 13 8 1.0393 -5.6388 2.9215 14 6 0.7206 -6.9226 2.6934 15 8 0.2671 -7.2515 1.6229 16 6 0.9272 -7.9535 3.7731 17 16 0.4065 -9.5806 3.1631 18 6 0.7266 -10.6687 4.5789 19 9 2.0870 -10.6257 4.9019 20 9 -0.0272 -10.2395 5.6766 21 6 0.4984 -3.3190 2.4146 22 6 0.2263 -2.3402 1.2680 23 1 -0.4849 0.8400 0.0004 24 1 1.0402 -4.0608 -0.8485 25 1 2.7330 -3.5129 -0.7671 26 1 2.3088 -5.6065 0.5685 27 1 2.9057 -4.2544 1.5613 28 1 -0.0271 -5.0411 1.2314 29 1 1.9823 -7.9884 4.0450 30 1 0.3351 -7.6866 4.6485 31 1 0.4457 -11.6902 4.3228 32 1 1.3481 -2.9671 2.9994 33 1 -0.3818 -3.3836 3.0543 34 1 0.0992 -1.3345 1.6685 35 1 -0.6773 -2.6386 0.7365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347570271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:30 Heat of formation + Delta-G solvation = -174.422829 kcal Electronic energy + Delta-G solvation = -21438.637550 eV Core-core repulsion = 17620.152243 eV Total energy + Delta-G solvation = -3818.485307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.19999 -48.28925 -41.78156 -39.18022 -37.43346 -34.64682 -32.41366 -31.75475 -31.15873 -27.91825 -27.10912 -24.35849 -23.89924 -22.30341 -21.08608 -19.63118 -18.93925 -18.79686 -18.65321 -18.48279 -17.52104 -17.28156 -16.79470 -16.30067 -15.73848 -15.45202 -15.32604 -14.98692 -14.92914 -14.61827 -14.52350 -14.40402 -14.14308 -14.01701 -13.30810 -13.08249 -12.77112 -12.66572 -12.59408 -12.53161 -12.19198 -12.02431 -11.92641 -11.74496 -11.45930 -11.33581 -11.12184 -10.56834 -9.42117 -8.77686 -7.91720 -5.37968 -0.39672 0.56697 0.95078 1.48143 1.50183 1.54401 1.57828 2.50117 2.82802 3.23312 3.33310 3.41975 3.51662 3.58670 3.73613 3.76342 3.82653 4.03994 4.11463 4.33408 4.53712 4.70282 4.76027 4.84085 4.92295 5.01494 5.19051 5.34285 5.41230 5.60699 5.65877 6.34871 6.49047 7.09839 7.78066 8.30920 9.15947 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.047402 B = 0.002787 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.544484 B =10042.518777 C =10087.752391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.269 4.269 8 H 0.070 0.930 9 N -0.611 5.611 10 C 0.146 3.854 11 C -0.133 4.133 12 C 0.106 3.894 13 O -0.345 6.345 14 C 0.476 3.524 15 O -0.520 6.520 16 C -0.097 4.097 17 S -0.196 6.196 18 C 0.287 3.713 19 F -0.193 7.193 20 F -0.193 7.193 21 C -0.122 4.122 22 C 0.180 3.820 23 H 0.252 0.748 24 H 0.014 0.986 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.197 0.803 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.052 -21.118 11.849 24.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.399 4.399 8 H 0.087 0.913 9 N -0.334 5.334 10 C 0.020 3.980 11 C -0.172 4.172 12 C 0.052 3.948 13 O -0.261 6.261 14 C 0.319 3.681 15 O -0.409 6.409 16 C -0.245 4.245 17 S 0.026 5.974 18 C 0.125 3.875 19 F -0.174 7.174 20 F -0.174 7.174 21 C -0.161 4.161 22 C 0.054 3.946 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.214 0.786 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 1.431 -21.305 10.559 23.821 hybrid contribution 0.563 1.472 0.796 1.766 sum 1.995 -19.833 11.355 22.940 Atomic orbital electron populations 1.70159 1.06711 1.26218 1.54952 1.25843 0.96076 1.01636 1.00766 0.85297 0.77548 0.78906 0.78412 1.20148 1.21977 1.20187 1.19496 0.93003 0.85765 1.41612 0.91250 1.44373 1.35946 1.02417 1.50682 1.20954 0.98059 0.85598 0.93385 1.22344 0.97168 0.99938 0.97799 1.22785 0.98651 0.87148 0.86235 1.86523 1.76993 1.17730 1.44900 1.22923 0.73985 0.83392 0.87842 1.90717 1.41882 1.80895 1.27360 1.23191 1.10317 0.91009 0.99980 1.88538 1.85125 1.02948 1.20802 1.24715 0.74873 1.03513 0.84416 1.93104 1.33247 1.97515 1.93559 1.93107 1.75683 1.91601 1.57056 1.22191 1.02341 0.92111 0.99430 1.20596 0.88020 0.97620 0.88381 0.93857 0.96788 0.91528 0.90987 0.90868 0.91382 0.82816 0.82832 0.78614 0.91177 0.90238 0.91281 0.98055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 11.20 21.65 0.24 -54.43 16 2 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 3 Si 0.97 44.18 29.59 68.60 2.03 46.21 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.27 -14.67 9.58 84.03 0.81 -13.87 16 8 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 9 N -0.61 -30.75 2.99 -699.11 -2.09 -32.84 16 10 C 0.15 6.18 6.51 86.36 0.56 6.74 16 11 C -0.13 -4.72 5.75 30.78 0.18 -4.54 16 12 C 0.11 3.74 2.42 30.73 0.07 3.81 16 13 O -0.34 -10.27 9.88 -51.38 -0.51 -10.78 16 14 C 0.48 12.93 7.95 71.24 0.57 13.50 16 15 O -0.52 -17.55 15.08 21.97 0.33 -17.22 16 16 C -0.10 -1.71 6.50 71.24 0.46 -1.25 16 17 S -0.20 -3.48 21.11 -56.49 -1.19 -4.67 16 18 C 0.29 3.01 5.91 113.37 0.67 3.68 16 19 F -0.19 -2.59 17.36 44.97 0.78 -1.81 16 20 F -0.19 -2.60 17.36 44.97 0.78 -1.82 16 21 C -0.12 -4.57 5.74 30.67 0.18 -4.39 16 22 C 0.18 8.61 5.30 86.36 0.46 9.07 16 23 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 24 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 26 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 28 H 0.07 2.61 7.16 -2.39 -0.02 2.59 16 29 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.15 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.20 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 3.69 6.06 -2.39 -0.01 3.68 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -66.90 317.09 5.84 -61.06 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: 1.10 Total: 5.75 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.37 Total: 10.55 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -1.85 Total: -87.28 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.18 Total: -28.00 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 1.56 Total: -3.62 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.19 Total: -4.67 kcal Total: -66.90 5.84 -61.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347570271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.367 kcal (2) G-P(sol) polarization free energy of solvation -66.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds