Wall clock time and date at job start Tue Mar 31 2020 07:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99949 * 2 1 4 4 H 1.48497 * 109.47321 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47313 * 119.99929 * 3 2 1 6 6 H 1.48504 * 109.47278 * 240.00008 * 3 2 1 7 7 C 1.37876 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00216 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00018 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.94668 * 50.32808 * 9 7 2 11 11 C 1.53949 * 113.74371 * 278.73796 * 9 7 2 12 12 N 1.47813 * 86.03729 * 222.08744 * 11 9 7 13 13 C 1.34772 * 134.45268 * 204.64300 * 12 11 9 14 14 O 1.21553 * 120.00157 * 174.30567 * 13 12 11 15 15 C 1.47845 * 120.00294 * 354.31004 * 13 12 11 16 16 C 1.39591 * 120.14849 * 172.84803 * 15 13 12 17 17 C 1.37939 * 119.85687 * 179.78986 * 16 15 13 18 18 C 1.38384 * 120.14202 * 0.48377 * 17 16 15 19 19 C 1.38335 * 120.29123 * 359.74377 * 18 17 16 20 20 C 1.50700 * 119.92429 * 180.02562 * 19 18 17 21 21 Cl 1.80296 * 109.47028 * 270.01970 * 20 19 18 22 22 C 1.37979 * 120.14926 * 0.02562 * 19 18 17 23 23 C 1.47575 * 91.05029 * 24.54658 * 12 11 9 24 24 H 0.97001 * 120.00215 * 0.02562 * 1 2 3 25 25 H 0.96694 * 114.00011 * 309.67061 * 10 9 7 26 26 H 1.09004 * 113.76076 * 336.35274 * 11 9 7 27 27 H 1.09001 * 113.77007 * 107.74353 * 11 9 7 28 28 H 1.08005 * 120.07490 * 359.97438 * 16 15 13 29 29 H 1.08001 * 119.92602 * 180.20583 * 17 16 15 30 30 H 1.07992 * 119.85321 * 179.72684 * 18 17 16 31 31 H 1.08992 * 109.47570 * 30.02159 * 20 19 18 32 32 H 1.09002 * 109.47309 * 150.02538 * 20 19 18 33 33 H 1.07997 * 120.07698 * 179.97438 * 22 19 18 34 34 H 1.09005 * 113.76954 * 221.15209 * 23 12 11 35 35 H 1.08999 * 113.86930 * 89.77089 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.2453 -2.5618 -1.0127 11 6 0.7552 -2.9286 1.3933 12 7 1.1913 -4.2896 1.0160 13 6 0.8418 -5.5332 1.4002 14 8 1.3107 -6.4995 0.8311 15 6 -0.1122 -5.7222 2.5137 16 6 -0.5913 -6.9976 2.8176 17 6 -1.4779 -7.1676 3.8606 18 6 -1.9001 -6.0759 4.5988 19 6 -1.4328 -4.8086 4.2998 20 6 -1.8976 -3.6256 5.1094 21 17 -3.3812 -2.9290 4.3583 22 6 -0.5421 -4.6254 3.2621 23 6 2.1608 -3.7401 0.0485 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3467 -1.7974 -1.0271 26 1 1.3259 -2.4964 2.2152 27 1 -0.3225 -2.8320 1.5250 28 1 -0.2663 -7.8499 2.2393 29 1 -1.8467 -8.1544 4.0988 30 1 -2.5976 -6.2138 5.4115 31 1 -2.1219 -3.9468 6.1265 32 1 -1.1126 -2.8697 5.1319 33 1 -0.1783 -3.6355 3.0295 34 1 2.2033 -4.2902 -0.8916 35 1 3.1459 -3.5465 0.4728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358149691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:37 Heat of formation + Delta-G solvation = -49.045079 kcal Electronic energy + Delta-G solvation = -21359.418820 eV Core-core repulsion = 17962.723030 eV Total energy + Delta-G solvation = -3396.695791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60658 -40.07216 -38.85497 -36.87714 -35.89424 -34.15811 -33.46017 -32.61960 -30.14141 -27.74281 -27.29560 -27.13019 -24.55873 -22.71791 -21.62982 -20.20788 -19.31268 -18.15885 -17.83488 -17.04100 -16.84958 -16.43455 -16.19640 -15.86712 -15.42870 -15.38874 -14.95679 -14.58771 -14.42258 -14.16283 -13.95140 -13.85686 -13.43093 -13.23672 -12.98730 -12.76921 -12.67526 -12.42072 -12.23181 -12.20361 -11.50501 -11.39035 -11.30045 -11.02826 -10.65025 -10.24817 -10.06408 -9.91772 -9.58938 -8.25888 -6.43500 -0.22612 0.12943 1.43733 1.48609 1.51143 1.58123 1.85208 1.89753 2.41162 2.84923 2.96317 3.31731 3.47697 3.69441 3.83778 3.98608 4.14702 4.16703 4.27549 4.41640 4.44796 4.51373 4.56331 4.65499 4.75226 4.82055 4.82551 5.01257 5.19217 5.27779 5.37335 5.40943 5.72101 5.83874 5.91615 6.61936 6.72840 7.03728 7.29754 7.42284 8.79891 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.005502 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.743216 B = 5087.572447 C = 6599.840841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.036 3.964 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.074 0.926 9 C 0.220 3.780 10 O -0.587 6.587 11 C 0.092 3.908 12 N -0.630 5.630 13 C 0.560 3.440 14 O -0.596 6.596 15 C -0.151 4.151 16 C -0.068 4.068 17 C -0.121 4.121 18 C -0.066 4.066 19 C -0.120 4.120 20 C 0.013 3.987 21 Cl -0.197 7.197 22 C -0.085 4.085 23 C 0.111 3.889 24 H 0.276 0.724 25 H 0.388 0.612 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.129 0.871 29 H 0.167 0.833 30 H 0.168 0.832 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.059 0.941 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 -6.151 14.062 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.165 4.165 3 Si 0.792 3.208 4 H -0.209 1.209 5 H -0.191 1.191 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.092 0.908 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.030 4.030 12 N -0.361 5.361 13 C 0.353 3.647 14 O -0.481 6.481 15 C -0.153 4.153 16 C -0.087 4.087 17 C -0.138 4.138 18 C -0.084 4.084 19 C -0.120 4.120 20 C -0.049 4.049 21 Cl -0.171 7.171 22 C -0.104 4.104 23 C -0.011 4.011 24 H 0.086 0.914 25 H 0.242 0.758 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.185 0.815 30 H 0.185 0.815 31 H 0.157 0.843 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.078 0.922 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.711 -7.201 13.636 16.124 hybrid contribution 0.208 1.398 -0.510 1.503 sum -4.503 -5.802 13.126 15.041 Atomic orbital electron populations 1.69467 1.07096 1.29009 1.49841 1.25724 0.95713 1.02484 0.92595 0.85465 0.78289 0.78101 0.78932 1.20891 1.19063 1.20127 1.21659 0.94158 0.90540 1.53127 0.90818 1.20137 0.85806 0.91875 0.84305 1.86059 1.47585 1.49740 1.56502 1.24256 0.99852 0.77132 1.01767 1.50130 1.39820 1.04992 1.41208 1.18570 0.81747 0.81202 0.83170 1.90656 1.58978 1.40111 1.58306 1.19885 1.01386 0.96172 0.97902 1.21464 0.95098 0.95314 0.96810 1.21469 0.96872 1.01062 0.94446 1.21671 0.96981 0.90726 0.99015 1.19895 0.98583 0.95949 0.97572 1.23363 0.88339 0.95018 0.98141 1.98755 1.45151 1.86918 1.86233 1.21876 0.95870 0.98732 0.93876 1.23515 0.94109 0.91949 0.91512 0.91448 0.75829 0.88395 0.91182 0.85338 0.81532 0.81500 0.84284 0.87346 0.84887 0.92242 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.52 11.20 21.45 0.24 -45.28 16 2 C 0.04 1.74 5.39 84.65 0.46 2.20 16 3 Si 0.97 38.66 29.54 68.60 2.03 40.69 16 4 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 6 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.56 -27.30 8.61 25.60 0.22 -27.08 16 8 H 0.07 3.49 7.81 -2.91 -0.02 3.46 16 9 C 0.22 10.54 1.40 -10.88 -0.02 10.53 16 10 O -0.59 -30.98 13.48 -148.98 -2.01 -32.98 16 11 C 0.09 3.89 5.61 86.44 0.48 4.37 16 12 N -0.63 -27.37 3.60 -843.01 -3.03 -30.40 16 13 C 0.56 24.23 7.99 86.79 0.69 24.93 16 14 O -0.60 -28.97 17.10 -3.88 -0.07 -29.03 16 15 C -0.15 -5.22 5.87 -20.09 -0.12 -5.34 16 16 C -0.07 -1.93 9.59 22.53 0.22 -1.71 16 17 C -0.12 -2.37 10.03 22.23 0.22 -2.15 16 18 C -0.07 -1.17 9.69 22.33 0.22 -0.95 16 19 C -0.12 -2.67 5.25 -19.90 -0.10 -2.78 16 20 C 0.01 0.23 6.78 71.24 0.48 0.72 16 21 Cl -0.20 -4.72 29.13 -2.72 -0.08 -4.80 16 22 C -0.08 -2.56 8.73 22.53 0.20 -2.36 16 23 C 0.11 4.92 8.23 86.49 0.71 5.63 16 24 H 0.28 13.10 8.31 -92.71 -0.77 12.33 16 25 H 0.39 20.60 6.60 -74.06 -0.49 20.11 16 26 H 0.10 3.82 8.00 -2.38 -0.02 3.80 16 27 H 0.07 3.03 6.90 -2.39 -0.02 3.01 16 28 H 0.13 3.74 7.67 -2.91 -0.02 3.72 16 29 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.14 1.42 8.08 -2.39 -0.02 1.40 16 32 H 0.11 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.13 4.29 4.10 -2.91 -0.01 4.28 16 34 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.11 4.26 8.09 -2.39 -0.02 4.24 16 Total: -1.00 -63.06 316.46 1.39 -61.68 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.64 Total: 34.13 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 3.66 Total: 6.00 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.79 Total: -75.68 kcal Atomic # 8 Polarization: -59.94 SS G_CDS: -2.08 Total: -62.02 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 17 Polarization: -4.72 SS G_CDS: -0.08 Total: -4.80 kcal Total: -63.06 1.39 -61.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358149691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.632 kcal (2) G-P(sol) polarization free energy of solvation -63.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds