Wall clock time and date at job start Tue Mar 31 2020 07:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 C 1.31167 * 119.99931 * 124.99938 * 20 19 18 22 22 Cl 1.73599 * 119.99881 * 0.02562 * 21 20 19 23 23 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 27 27 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 1.08001 * 120.00601 * 305.00649 * 20 19 18 34 34 H 1.07998 * 120.00274 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 6 -1.3853 -11.1251 -2.8608 22 17 -2.0919 -9.8803 -3.8432 23 6 1.4365 -4.7345 0.2256 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5473 0.1885 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9003 1.0435 29 1 0.5456 -7.0924 0.9735 30 1 0.3769 -9.4904 -0.2449 31 1 -0.1992 -8.8911 -2.9439 32 1 1.3856 -9.6985 -2.8750 33 1 0.1849 -11.6778 -1.6231 34 1 -1.8763 -12.0824 -2.7665 35 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439927861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:31 Heat of formation + Delta-G solvation = -29.271526 kcal Electronic energy + Delta-G solvation = -20012.626072 eV Core-core repulsion = 16616.787727 eV Total energy + Delta-G solvation = -3395.838345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.80375 -38.74619 -37.32964 -36.45535 -35.43256 -32.86009 -32.28678 -31.81324 -29.16885 -27.68112 -25.76654 -25.05820 -21.63934 -21.18374 -20.80291 -19.96828 -17.68040 -17.19800 -16.81826 -16.70471 -15.73079 -15.23604 -14.87253 -14.62093 -14.34423 -14.20933 -13.65541 -13.38008 -13.34578 -13.06831 -12.60307 -12.41726 -12.34129 -12.18597 -11.75765 -11.46748 -11.22512 -10.96311 -10.78776 -10.71160 -10.55275 -10.38164 -9.92994 -9.52363 -9.26636 -9.05935 -8.77752 -7.99418 -7.14600 -6.37958 -3.96760 1.29439 1.93296 2.17249 2.46504 2.81019 3.16382 3.18009 3.23765 3.33209 4.02327 4.24856 4.60496 4.75486 4.94737 5.12684 5.16850 5.21425 5.28602 5.44175 5.55932 5.68389 5.72519 5.80928 5.84817 6.00082 6.24773 6.33945 6.41146 6.72870 6.99040 7.14478 7.33776 7.43298 7.46703 7.51427 7.90220 8.07450 8.34369 9.07987 9.79591 10.80517 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.002921 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.842237 B = 9582.210326 C =10604.010897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.513 3.487 17 O -0.516 6.516 18 N -0.736 5.736 19 C 0.134 3.866 20 C -0.161 4.161 21 C -0.091 4.091 22 Cl -0.082 7.082 23 C -0.174 4.174 24 H 0.268 0.732 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.399 0.601 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -22.653 -0.603 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.034 4.034 15 C -0.132 4.132 16 C 0.300 3.700 17 O -0.390 6.390 18 N -0.390 5.390 19 C 0.011 3.989 20 C -0.181 4.181 21 C -0.137 4.137 22 Cl -0.054 7.054 23 C -0.194 4.194 24 H 0.078 0.922 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.233 0.767 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.170 0.830 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.525 -21.853 -1.456 21.908 hybrid contribution 0.324 0.481 0.277 0.642 sum -0.201 -21.373 -1.179 21.406 Atomic orbital electron populations 1.70057 1.05924 1.27395 1.46620 1.25277 0.95836 0.98766 0.96721 0.85653 0.79136 0.80483 0.78176 1.19137 1.20206 1.20199 1.21365 0.91797 0.80864 1.52578 0.89090 1.83977 1.34247 1.11375 1.78820 1.19275 0.90241 0.87961 0.92366 1.21182 0.93845 0.99001 1.10938 1.20674 0.98355 0.92339 0.97995 1.20344 0.93294 0.96868 1.11014 1.18661 0.93232 0.91775 0.99754 1.20582 1.02622 0.95877 0.94158 1.20797 0.76974 0.80187 0.92092 1.90771 1.49009 1.59247 1.39963 1.45965 1.63179 1.21490 1.08401 1.20518 1.00851 0.91605 0.85933 1.23265 0.95597 0.99049 1.00149 1.24642 0.96429 0.95192 0.97396 1.98403 1.83835 1.53751 1.69380 1.19950 0.99076 0.89996 1.10359 0.92185 0.85627 0.87497 0.87958 0.88375 0.88211 0.76707 0.89665 0.90261 0.84150 0.83033 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 8 H 0.09 2.45 5.21 -52.49 -0.27 2.17 16 9 O -0.18 -5.37 9.76 0.05 0.00 -5.37 16 10 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 11 C -0.23 -5.31 9.17 -39.39 -0.36 -5.67 16 12 C -0.08 -1.48 10.04 -39.61 -0.40 -1.88 16 13 C -0.20 -3.61 9.70 -39.53 -0.38 -3.99 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 16 C 0.51 7.48 7.82 -10.99 -0.09 7.40 16 17 O -0.52 -10.27 16.03 5.56 0.09 -10.19 16 18 N -0.74 -7.46 5.55 -61.47 -0.34 -7.80 16 19 C 0.13 1.33 5.97 -5.20 -0.03 1.30 16 20 C -0.16 -1.00 9.64 -36.07 -0.35 -1.35 16 21 C -0.09 -0.57 10.82 28.97 0.31 -0.26 16 22 Cl -0.08 -0.76 26.97 -51.86 -1.40 -2.16 16 23 C -0.17 -3.91 9.65 -39.40 -0.38 -4.29 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 26 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 27 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 28 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 29 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 30 H 0.40 2.62 8.46 -40.82 -0.35 2.27 16 31 H 0.09 1.04 6.01 -51.93 -0.31 0.72 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.08 16 34 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.11 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -35.66 325.70 -7.11 -42.77 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -3.74 Total: 4.55 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.36 Total: -17.54 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.42 Total: -33.07 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.40 Total: -2.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.66 -7.11 -42.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439927861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.495 kcal (2) G-P(sol) polarization free energy of solvation -35.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds