Wall clock time and date at job start Tue Mar 31 2020 07:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 C 1.31167 * 119.99931 * 124.99938 * 20 19 18 22 22 Cl 1.73599 * 119.99881 * 0.02562 * 21 20 19 23 23 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 27 27 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 1.08001 * 120.00601 * 305.00649 * 20 19 18 34 34 H 1.07998 * 120.00274 * 179.97438 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 6 -1.3853 -11.1251 -2.8608 22 17 -2.0919 -9.8803 -3.8432 23 6 1.4365 -4.7345 0.2256 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5473 0.1885 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9003 1.0435 29 1 0.5456 -7.0924 0.9735 30 1 0.3769 -9.4904 -0.2449 31 1 -0.1992 -8.8911 -2.9439 32 1 1.3856 -9.6985 -2.8750 33 1 0.1849 -11.6778 -1.6231 34 1 -1.8763 -12.0824 -2.7665 35 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001439927861.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:31 Heat of formation + Delta-G solvation = -54.631642 kcal Electronic energy + Delta-G solvation = -20013.725769 eV Core-core repulsion = 16616.787727 eV Total energy + Delta-G solvation = -3396.938042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12163 -40.38031 -38.30222 -37.87330 -36.33065 -34.34554 -33.80213 -33.10734 -30.88879 -28.96175 -27.37491 -26.50360 -23.28393 -22.77018 -21.66484 -20.96317 -19.49752 -18.80824 -18.03259 -17.57828 -16.86518 -16.72278 -16.30584 -16.09594 -15.84060 -15.49558 -15.25500 -14.84031 -14.58462 -14.35900 -14.00541 -13.78943 -13.56017 -13.21608 -12.97909 -12.79462 -12.73126 -12.47942 -12.36207 -12.21541 -12.07974 -11.62958 -11.20122 -11.05071 -10.80570 -10.29731 -9.95622 -9.62454 -8.97042 -8.47131 -6.15684 0.51244 0.75772 0.81324 1.33712 1.41089 1.42768 1.52730 1.69068 2.17551 2.36518 2.86558 3.19360 3.45265 3.70949 3.82062 4.11340 4.14945 4.22161 4.32992 4.45778 4.55333 4.59830 4.66885 4.74849 4.76448 5.07962 5.08894 5.13516 5.25130 5.31838 5.46413 5.66009 5.73697 5.76251 6.03206 6.24824 6.60089 6.97482 7.32714 7.79542 8.76804 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.002921 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.842237 B = 9582.210326 C =10604.010897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.413 4.413 8 H 0.100 0.900 9 O -0.236 6.236 10 C 0.111 3.889 11 C -0.247 4.247 12 C -0.074 4.074 13 C -0.179 4.179 14 C -0.027 4.027 15 C -0.089 4.089 16 C 0.512 3.488 17 O -0.581 6.581 18 N -0.712 5.712 19 C 0.128 3.872 20 C -0.153 4.153 21 C -0.089 4.089 22 Cl -0.118 7.118 23 C -0.194 4.194 24 H 0.272 0.728 25 H 0.117 0.883 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.121 0.879 30 H 0.421 0.579 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.180 0.820 34 H 0.186 0.814 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -25.962 0.675 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.143 6.143 10 C 0.061 3.939 11 C -0.267 4.267 12 C -0.092 4.092 13 C -0.198 4.198 14 C -0.027 4.027 15 C -0.129 4.129 16 C 0.300 3.700 17 O -0.460 6.460 18 N -0.366 5.366 19 C 0.005 3.995 20 C -0.171 4.171 21 C -0.134 4.134 22 Cl -0.090 7.090 23 C -0.214 4.214 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.166 0.834 29 H 0.139 0.861 30 H 0.259 0.741 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.197 0.803 34 H 0.203 0.797 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.409 -25.269 -0.139 25.308 hybrid contribution -0.197 1.113 -0.095 1.134 sum 1.212 -24.156 -0.234 24.187 Atomic orbital electron populations 1.70204 1.08050 1.28679 1.49180 1.26628 0.96904 1.02769 0.95909 0.84503 0.78178 0.74695 0.78627 1.17512 1.19415 1.19013 1.21867 0.92489 0.81500 1.53099 0.88255 1.83935 1.35969 1.12600 1.81789 1.19883 0.91687 0.87911 0.94378 1.21304 0.93122 1.00297 1.11945 1.21144 1.00239 0.91508 0.96325 1.20992 0.93484 0.98055 1.07248 1.19231 0.93821 0.92938 0.96757 1.20704 1.04321 0.93582 0.94259 1.20991 0.76578 0.80840 0.91641 1.90764 1.52150 1.61182 1.41870 1.45738 1.61109 1.20128 1.09614 1.20522 1.00469 0.93180 0.85327 1.23331 0.95209 0.97773 1.00820 1.25143 0.96522 0.95299 0.96435 1.98407 1.84432 1.55625 1.70572 1.20238 0.99254 0.90587 1.11306 0.91867 0.86519 0.83659 0.83290 0.83419 0.86061 0.74143 0.92322 0.91040 0.80344 0.79669 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.75 13.67 21.61 0.30 -58.46 16 2 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 3 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.41 -25.35 9.49 67.92 0.64 -24.70 16 8 H 0.10 5.63 5.21 -2.91 -0.02 5.61 16 9 O -0.24 -15.10 9.76 -22.74 -0.22 -15.32 16 10 C 0.11 5.98 6.65 22.58 0.15 6.13 16 11 C -0.25 -11.65 9.17 22.39 0.21 -11.44 16 12 C -0.07 -2.75 10.04 22.25 0.22 -2.52 16 13 C -0.18 -5.94 9.70 22.30 0.22 -5.72 16 14 C -0.03 -0.95 4.37 -19.88 -0.09 -1.04 16 15 C -0.09 -2.04 5.83 29.10 0.17 -1.87 16 16 C 0.51 13.76 7.82 87.66 0.69 14.45 16 17 O -0.58 -22.93 16.03 -3.04 -0.05 -22.97 16 18 N -0.71 -12.29 5.55 -466.79 -2.59 -14.88 16 19 C 0.13 2.32 5.97 85.63 0.51 2.83 16 20 C -0.15 -1.37 9.64 25.48 0.25 -1.12 16 21 C -0.09 -0.88 10.82 67.61 0.73 -0.14 16 22 Cl -0.12 -2.16 26.97 -2.72 -0.07 -2.24 16 23 C -0.19 -8.98 9.65 22.39 0.22 -8.76 16 24 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 25 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 26 H 0.15 4.22 8.06 -2.91 -0.02 4.19 16 27 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.15 1.97 8.08 -2.39 -0.02 1.95 16 29 H 0.12 2.32 8.08 -2.39 -0.02 2.30 16 30 H 0.42 3.63 8.46 -92.71 -0.78 2.85 16 31 H 0.06 1.42 6.01 -2.38 -0.01 1.41 16 32 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 34 H 0.19 0.57 8.06 -2.91 -0.02 0.54 16 35 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -87.09 325.70 4.11 -82.98 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.34 Total: 19.17 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.38 Total: -34.94 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -2.29 Total: -73.34 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.27 Total: -38.30 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.07 Total: -2.24 kcal Total: -87.09 4.11 -82.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439927861.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.347 kcal (2) G-P(sol) polarization free energy of solvation -87.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds