Wall clock time and date at job start Tue Mar 31 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 C 1.31167 * 119.99931 * 124.99938 * 20 19 18 22 22 Cl 1.73600 * 120.00145 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 27 27 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 1.08001 * 120.00601 * 305.00649 * 20 19 18 34 34 H 1.08001 * 119.99468 * 0.02562 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 6 -1.3853 -11.1251 -2.8608 22 17 -2.1745 -12.6639 -2.7092 23 6 1.4365 -4.7345 0.2256 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5473 0.1885 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9003 1.0435 29 1 0.5456 -7.0924 0.9735 30 1 0.3769 -9.4904 -0.2449 31 1 -0.1992 -8.8911 -2.9439 32 1 1.3856 -9.6985 -2.8750 33 1 0.1849 -11.6778 -1.6231 34 1 -1.8248 -10.3506 -3.4720 35 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001439927862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:33 Heat of formation + Delta-G solvation = -32.436307 kcal Electronic energy + Delta-G solvation = -19808.280259 eV Core-core repulsion = 16412.304679 eV Total energy + Delta-G solvation = -3395.975580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86349 -38.77516 -37.28105 -36.52298 -35.65349 -32.92580 -32.30886 -31.83880 -29.19232 -27.67442 -25.73908 -25.06673 -21.66417 -21.21644 -20.98260 -20.03772 -17.71024 -17.22484 -16.85566 -16.61094 -15.77404 -15.30210 -14.92102 -14.58997 -14.36279 -14.22766 -13.70074 -13.43955 -13.37699 -13.17606 -12.71337 -12.49062 -12.38141 -12.06702 -11.78415 -11.49249 -11.28812 -11.23710 -10.79431 -10.75200 -10.58059 -10.41357 -9.99628 -9.57834 -9.29241 -9.17093 -8.79319 -8.02160 -7.17072 -6.39858 -3.98765 1.27169 1.80295 2.14872 2.44105 2.73972 3.15570 3.16517 3.21442 3.29335 4.00702 4.37524 4.52293 4.61133 4.91371 5.04850 5.10836 5.15110 5.25621 5.40245 5.53129 5.66391 5.69847 5.78280 5.81191 5.97615 6.22235 6.25800 6.38491 6.70292 6.96457 7.12004 7.30977 7.38449 7.41993 7.48933 7.87660 8.05401 8.26854 9.06001 9.77237 10.78516 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026130 B = 0.002453 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.302236 B =11411.172909 C =12174.623458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.154 3.846 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.034 4.034 15 C -0.093 4.093 16 C 0.514 3.486 17 O -0.517 6.517 18 N -0.738 5.738 19 C 0.154 3.846 20 C -0.160 4.160 21 C -0.086 4.086 22 Cl -0.090 7.090 23 C -0.175 4.175 24 H 0.269 0.731 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.401 0.599 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.151 0.849 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.141 -21.613 -0.905 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.249 4.249 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.035 4.035 15 C -0.133 4.133 16 C 0.301 3.699 17 O -0.390 6.390 18 N -0.393 5.393 19 C 0.030 3.970 20 C -0.180 4.180 21 C -0.131 4.131 22 Cl -0.062 7.062 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.235 0.765 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.377 -21.047 -1.656 21.116 hybrid contribution 0.313 0.403 0.295 0.589 sum -0.064 -20.644 -1.361 20.689 Atomic orbital electron populations 1.70045 1.05932 1.27532 1.46509 1.25278 0.95840 0.98779 0.96689 0.85718 0.78894 0.80159 0.78684 1.19922 1.20303 1.19227 1.21316 0.91778 0.80865 1.52704 0.89129 1.83976 1.34228 1.11365 1.78792 1.19280 0.90255 0.87973 0.92395 1.21182 0.93840 0.99001 1.10901 1.20679 0.98377 0.92337 0.97961 1.20348 0.93298 0.96887 1.11003 1.18654 0.93230 0.91750 0.99824 1.20584 1.02690 0.95906 0.94075 1.20819 0.76847 0.80100 0.92156 1.90773 1.48992 1.59303 1.39966 1.46008 1.63256 1.21534 1.08465 1.20185 1.00497 0.90453 0.85846 1.23246 0.95538 0.98815 1.00370 1.24568 0.95851 0.89655 1.03061 1.98386 1.80488 1.30493 1.96843 1.19944 0.99057 0.89992 1.10412 0.92117 0.85623 0.87478 0.87940 0.88300 0.88152 0.76488 0.90665 0.89884 0.85352 0.83147 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -11.18 9.49 30.89 0.29 -10.88 16 8 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 9 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 10 C 0.15 3.88 6.65 -39.11 -0.26 3.62 16 11 C -0.23 -5.22 9.17 -39.39 -0.36 -5.58 16 12 C -0.08 -1.45 10.04 -39.61 -0.40 -1.85 16 13 C -0.20 -3.54 9.70 -39.53 -0.38 -3.93 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.19 5.83 -29.03 -0.17 -1.36 16 16 C 0.51 7.10 7.82 -10.99 -0.09 7.01 16 17 O -0.52 -9.81 16.03 5.56 0.09 -9.72 16 18 N -0.74 -6.89 5.55 -61.47 -0.34 -7.23 16 19 C 0.15 1.32 6.11 -5.20 -0.03 1.28 16 20 C -0.16 -1.00 9.36 -36.07 -0.34 -1.34 16 21 C -0.09 -0.55 10.43 28.97 0.30 -0.25 16 22 Cl -0.09 -0.65 29.10 -51.86 -1.51 -2.16 16 23 C -0.17 -3.84 9.65 -39.40 -0.38 -4.22 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 26 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 27 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 29 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.40 2.48 8.46 -40.82 -0.35 2.13 16 31 H 0.08 0.71 7.80 -51.93 -0.40 0.31 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 34 H 0.15 0.82 7.84 -52.49 -0.41 0.41 16 35 H 0.11 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -34.67 328.89 -7.25 -41.92 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.82 Total: 4.28 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -2.36 Total: -17.59 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.42 Total: -32.29 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.09 Total: -15.01 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.67 -7.25 -41.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439927862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.485 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds