Wall clock time and date at job start Tue Mar 31 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 270.02222 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 C 1.31167 * 119.99931 * 124.99938 * 20 19 18 22 22 Cl 1.73600 * 120.00145 * 179.97438 * 21 20 19 23 23 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 27 27 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 28 28 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 29 29 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 1.08001 * 120.00601 * 305.00649 * 20 19 18 34 34 H 1.08001 * 119.99468 * 0.02562 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2649 -7.8051 -0.9051 17 8 1.6189 -7.1951 -1.8917 18 7 0.6605 -9.0028 -1.0340 19 6 0.4306 -9.5676 -2.3661 20 6 -0.2547 -10.9032 -2.2340 21 6 -1.3853 -11.1251 -2.8608 22 17 -2.1745 -12.6639 -2.7092 23 6 1.4365 -4.7345 0.2256 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5473 0.1885 27 1 4.1534 -6.7248 0.4030 28 1 2.1300 -7.9003 1.0435 29 1 0.5456 -7.0924 0.9735 30 1 0.3769 -9.4904 -0.2449 31 1 -0.1992 -8.8911 -2.9439 32 1 1.3856 -9.6985 -2.8750 33 1 0.1849 -11.6778 -1.6231 34 1 -1.8248 -10.3506 -3.4720 35 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001439927862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:33 Heat of formation + Delta-G solvation = -56.299019 kcal Electronic energy + Delta-G solvation = -19809.315024 eV Core-core repulsion = 16412.304679 eV Total energy + Delta-G solvation = -3397.010345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12162 -40.37872 -38.26692 -37.80070 -36.52213 -34.34030 -33.83527 -33.12007 -30.87905 -28.92601 -27.35457 -26.42300 -23.27395 -22.75469 -21.74140 -21.07742 -19.49609 -18.80447 -18.04374 -17.47525 -16.85644 -16.70706 -16.29496 -16.09619 -15.88239 -15.48698 -15.15321 -14.84170 -14.54837 -14.36758 -14.00790 -13.88433 -13.56488 -13.28524 -12.96408 -12.74954 -12.64749 -12.45598 -12.37004 -12.20623 -12.09568 -11.83431 -11.19465 -11.06316 -10.79545 -10.34154 -9.98208 -9.61659 -8.96360 -8.46575 -6.14984 0.51512 0.74724 0.79122 1.26385 1.34255 1.44141 1.52291 1.68326 2.18146 2.38267 2.87174 3.19986 3.46049 3.81822 3.86818 3.97347 4.12182 4.19143 4.33524 4.38944 4.48272 4.59704 4.68123 4.68255 4.75808 5.08457 5.11978 5.14081 5.24575 5.32683 5.44445 5.66743 5.74440 5.77063 6.03700 6.25414 6.57825 6.98083 7.30468 7.80070 8.77095 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.026130 B = 0.002453 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.302236 B =11411.172909 C =12174.623458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.025 4.025 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.110 3.890 11 C -0.247 4.247 12 C -0.075 4.075 13 C -0.180 4.180 14 C -0.026 4.026 15 C -0.091 4.091 16 C 0.515 3.485 17 O -0.579 6.579 18 N -0.715 5.715 19 C 0.153 3.847 20 C -0.150 4.150 21 C -0.088 4.088 22 Cl -0.095 7.095 23 C -0.193 4.193 24 H 0.272 0.728 25 H 0.117 0.883 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.420 0.580 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -24.282 -0.036 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.266 4.266 12 C -0.093 4.093 13 C -0.198 4.198 14 C -0.027 4.027 15 C -0.130 4.130 16 C 0.303 3.697 17 O -0.457 6.457 18 N -0.370 5.370 19 C 0.030 3.970 20 C -0.169 4.169 21 C -0.133 4.133 22 Cl -0.067 7.067 23 C -0.213 4.213 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.163 0.837 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.453 -23.823 -0.753 23.879 hybrid contribution -0.193 0.844 0.030 0.866 sum 1.259 -22.979 -0.723 23.025 Atomic orbital electron populations 1.70194 1.08030 1.28744 1.49146 1.26619 0.96904 1.02764 0.95931 0.84571 0.77830 0.74478 0.79209 1.18945 1.19381 1.17582 1.21823 0.92491 0.81520 1.53137 0.88258 1.83934 1.35910 1.12559 1.81784 1.19899 0.91688 0.87961 0.94416 1.21301 0.93150 1.00268 1.11922 1.21141 1.00225 0.91541 0.96369 1.20993 0.93548 0.98025 1.07265 1.19220 0.93764 0.92948 0.96774 1.20707 1.04354 0.93559 0.94375 1.20931 0.76478 0.80728 0.91610 1.90768 1.52040 1.61175 1.41744 1.45796 1.61251 1.20164 1.09768 1.20179 1.00388 0.91289 0.85175 1.23088 0.95233 0.97861 1.00705 1.24675 0.95945 0.89521 1.03137 1.98389 1.80563 1.30854 1.96860 1.20238 0.99309 0.90497 1.11224 0.91865 0.86543 0.83733 0.83356 0.83588 0.85971 0.74203 0.91882 0.90279 0.83733 0.82562 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.19 13.67 21.61 0.30 -57.89 16 2 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 3 Si 1.02 44.13 29.55 68.60 2.03 46.15 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.41 -25.05 9.49 67.92 0.64 -24.41 16 8 H 0.10 5.55 5.21 -2.91 -0.02 5.53 16 9 O -0.23 -14.81 9.76 -22.74 -0.22 -15.03 16 10 C 0.11 5.82 6.65 22.58 0.15 5.97 16 11 C -0.25 -11.44 9.17 22.39 0.21 -11.24 16 12 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 13 C -0.18 -5.82 9.70 22.30 0.22 -5.60 16 14 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 15 C -0.09 -1.97 5.83 29.10 0.17 -1.80 16 16 C 0.51 12.88 7.82 87.66 0.69 13.56 16 17 O -0.58 -21.44 16.03 -3.04 -0.05 -21.49 16 18 N -0.72 -11.14 5.55 -466.79 -2.59 -13.73 16 19 C 0.15 2.32 6.11 85.63 0.52 2.84 16 20 C -0.15 -1.48 9.36 25.48 0.24 -1.24 16 21 C -0.09 -0.95 10.43 67.61 0.71 -0.25 16 22 Cl -0.10 -1.20 29.10 -2.72 -0.08 -1.28 16 23 C -0.19 -8.69 9.65 22.39 0.22 -8.48 16 24 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 26 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 27 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.15 1.86 8.08 -2.39 -0.02 1.84 16 29 H 0.12 2.19 8.08 -2.39 -0.02 2.18 16 30 H 0.42 3.41 8.46 -92.71 -0.78 2.62 16 31 H 0.06 1.14 7.80 -2.38 -0.02 1.12 16 32 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.16 1.48 7.84 -2.91 -0.02 1.46 16 35 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -82.77 328.89 4.08 -78.69 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.34 Total: 19.71 kcal Atomic # 6 Polarization: -39.49 SS G_CDS: 4.36 Total: -35.13 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.29 Total: -71.62 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.27 Total: -36.52 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -82.77 4.08 -78.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001439927862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.387 kcal (2) G-P(sol) polarization free energy of solvation -82.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds