Wall clock time and date at job start Tue Mar 31 2020 07:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38138 * 120.48377 * 2 1 4 4 N 1.31817 * 120.91700 * 180.29267 * 3 2 1 5 5 C 1.31921 * 122.04024 * 359.71364 * 4 3 2 6 6 Cl 1.73598 * 119.56364 * 179.97438 * 5 4 3 7 7 C 1.38307 * 120.86816 * 359.97438 * 5 4 3 8 8 C 1.39823 * 118.98373 * 0.02562 * 7 5 4 9 9 C 1.48048 * 120.91911 * 179.97438 * 8 7 5 10 10 O 1.21431 * 120.00056 * 173.85123 * 9 8 7 11 11 O 1.34667 * 120.00140 * 353.85540 * 9 8 7 12 12 C 1.45199 * 117.00095 * 185.24049 * 11 9 8 13 13 C 1.50697 * 112.85169 * 54.20733 * 12 11 9 14 14 H 1.08004 * 120.00058 * 243.46214 * 13 12 11 15 15 C 1.37874 * 120.00284 * 63.45762 * 13 12 11 16 16 N 1.31512 * 120.00130 * 187.21792 * 15 13 12 17 17 Si 1.86800 * 119.99876 * 7.22331 * 15 13 12 18 18 H 1.48507 * 109.47218 * 91.20198 * 17 15 13 19 19 H 1.48492 * 109.47386 * 211.20457 * 17 15 13 20 20 H 1.48500 * 109.47099 * 331.20689 * 17 15 13 21 21 C 1.53787 * 113.61145 * 282.90144 * 12 11 9 22 22 C 1.53782 * 87.07742 * 220.01919 * 21 12 11 23 23 C 1.53771 * 87.08344 * 25.43350 * 22 21 12 24 24 H 1.09000 * 109.46788 * 263.47593 * 1 2 3 25 25 H 1.08998 * 109.47444 * 23.46597 * 1 2 3 26 26 H 1.08995 * 109.47105 * 143.47228 * 1 2 3 27 27 H 1.07998 * 119.54386 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.50816 * 180.02562 * 7 5 4 29 29 H 0.97001 * 119.99632 * 179.97438 * 16 15 13 30 30 H 1.08993 * 113.61333 * 334.56819 * 21 12 11 31 31 H 1.08996 * 113.61119 * 105.47359 * 21 12 11 32 32 H 1.09000 * 113.61659 * 270.88135 * 22 21 12 33 33 H 1.09002 * 113.68861 * 139.99446 * 22 21 12 34 34 H 1.09007 * 113.61349 * 220.01506 * 23 22 21 35 35 H 1.09005 * 113.69651 * 89.12930 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1904 0.0000 4 7 3.5259 1.2004 -0.0058 5 6 4.2342 0.0875 -0.0062 6 17 5.9680 0.1756 -0.0146 7 6 3.6137 -1.1486 0.0000 8 6 2.2167 -1.2053 0.0063 9 6 1.5081 -2.5052 0.0125 10 8 0.3000 -2.5377 0.1304 11 8 2.2035 -3.6517 -0.1127 12 6 1.4362 -4.8801 -0.2160 13 6 0.4148 -4.8407 -1.3234 14 1 -0.6376 -4.9061 -1.0899 15 6 0.8239 -4.7212 -2.6346 16 7 -0.0653 -4.5441 -3.5873 17 14 2.6411 -4.8109 -3.0580 18 1 3.0106 -6.2176 -3.3579 19 1 2.9151 -3.9631 -4.2459 20 1 3.4422 -4.3235 -1.9065 21 6 0.8714 -5.3685 1.1284 22 6 1.2322 -6.7923 0.6730 23 6 2.3039 -6.1496 -0.2231 24 1 -0.3633 -0.1168 1.0210 25 1 -0.3634 0.9426 -0.4092 26 1 -0.3633 -0.8258 -0.6116 27 1 1.6683 2.1260 0.0004 28 1 4.1993 -2.0560 0.0001 29 1 0.2226 -4.4597 -4.5097 30 1 1.4432 -5.0281 1.9917 31 1 -0.2004 -5.2035 1.2375 32 1 0.4368 -7.2874 0.1160 33 1 1.6435 -7.4152 1.4674 34 1 2.3885 -6.6152 -1.2051 35 1 3.2680 -6.0224 0.2694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525498359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:15 Heat of formation + Delta-G solvation = -26.294849 kcal Electronic energy + Delta-G solvation = -21956.161803 eV Core-core repulsion = 18560.452537 eV Total energy + Delta-G solvation = -3395.709267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.61641 -39.38806 -37.45961 -36.65917 -34.76630 -33.25127 -32.45926 -32.08642 -27.42846 -26.69769 -25.06519 -24.94604 -23.15704 -22.18876 -20.61787 -18.70272 -17.98232 -17.00830 -16.58079 -15.51638 -15.41175 -15.21815 -15.10884 -14.88063 -14.18218 -13.87698 -13.78429 -13.12631 -13.00410 -12.82609 -12.39671 -11.84346 -11.72181 -11.60633 -11.53109 -11.32350 -11.13322 -11.08050 -10.77585 -10.28279 -10.09989 -10.08045 -9.89647 -9.82100 -9.41777 -9.12840 -8.88200 -8.77737 -8.64425 -6.31195 -4.37030 0.68182 0.86940 1.74510 3.04901 3.17431 3.27286 3.37680 3.47365 3.85061 4.27784 4.36757 4.72434 4.78875 4.95477 5.02082 5.12007 5.41935 5.46781 5.52189 5.64620 5.75333 5.77473 5.90506 5.97263 6.15309 6.29255 6.30691 6.35227 6.55871 6.59730 6.75138 6.84251 7.14272 7.31554 7.57279 7.65017 8.25992 8.70841 8.81214 9.29572 10.78795 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.006060 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.944618 B = 4619.553267 C = 4937.912612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C 0.107 3.893 4 N -0.463 5.463 5 C 0.153 3.847 6 Cl -0.033 7.033 7 C -0.101 4.101 8 C -0.058 4.058 9 C 0.503 3.497 10 O -0.463 6.463 11 O -0.363 6.363 12 C 0.199 3.801 13 C -0.505 4.505 14 H 0.087 0.913 15 C 0.085 3.915 16 N -0.873 5.873 17 Si 0.856 3.144 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.236 1.236 21 C -0.146 4.146 22 C -0.124 4.124 23 C -0.132 4.132 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.172 0.828 28 H 0.158 0.842 29 H 0.268 0.732 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.602 6.663 7.803 12.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.051 4.051 4 N -0.174 5.174 5 C -0.011 4.011 6 Cl -0.005 7.005 7 C -0.121 4.121 8 C -0.068 4.068 9 C 0.344 3.656 10 O -0.349 6.349 11 O -0.281 6.281 12 C 0.165 3.835 13 C -0.542 4.542 14 H 0.105 0.895 15 C -0.121 4.121 16 N -0.509 5.509 17 Si 0.682 3.318 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.159 1.159 21 C -0.184 4.184 22 C -0.161 4.161 23 C -0.170 4.170 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.124 0.876 27 H 0.189 0.811 28 H 0.176 0.824 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.792 7.395 7.661 12.630 hybrid contribution 0.711 -0.770 -0.554 1.186 sum 7.504 6.625 7.107 12.276 Atomic orbital electron populations 1.21063 0.88217 1.04139 1.04210 1.21266 0.99101 0.92045 0.95142 1.22564 0.87791 0.97713 0.97052 1.66810 1.08683 1.30689 1.11198 1.21436 0.87412 0.89758 1.02460 1.98392 1.06826 1.98622 1.96665 1.22199 0.94344 0.98298 0.97298 1.19950 0.92770 0.93184 1.00875 1.20282 0.85885 0.84127 0.75307 1.90748 1.14177 1.87523 1.42474 1.86600 1.43844 1.15950 1.81681 1.21760 0.89826 0.77063 0.94801 1.20773 0.93583 1.51529 0.88302 0.89480 1.25000 0.97746 0.93080 0.96299 1.69918 1.34233 1.45934 1.00859 0.87184 0.86727 0.78519 0.79331 1.20137 1.21687 1.15853 1.23345 1.01490 0.96215 0.97342 1.22466 0.99191 0.95804 0.98630 1.23286 0.97333 0.96272 1.00093 0.90025 0.91664 0.87619 0.81133 0.82444 0.92223 0.91657 0.91147 0.89501 0.92309 0.91244 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.81 36.01 0.32 -1.39 16 2 C -0.07 -1.12 5.93 -104.05 -0.62 -1.74 16 3 C 0.11 1.42 10.83 -17.59 -0.19 1.23 16 4 N -0.46 -6.91 10.31 -10.41 -0.11 -7.02 16 5 C 0.15 2.32 7.27 -17.49 -0.13 2.19 16 6 Cl -0.03 -0.44 29.10 -51.86 -1.51 -1.95 16 7 C -0.10 -1.63 9.47 -38.96 -0.37 -2.00 16 8 C -0.06 -1.04 5.91 -104.67 -0.62 -1.66 16 9 C 0.50 10.70 7.43 34.75 0.26 10.96 16 10 O -0.46 -10.66 12.03 -19.21 -0.23 -10.89 16 11 O -0.36 -8.03 7.45 -40.40 -0.30 -8.33 16 12 C 0.20 4.50 0.25 -90.96 -0.02 4.48 16 13 C -0.51 -13.52 7.13 -34.44 -0.25 -13.77 16 14 H 0.09 2.59 8.05 -52.48 -0.42 2.17 16 15 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 16 N -0.87 -25.64 13.96 55.43 0.77 -24.86 16 17 Si 0.86 20.64 24.61 -169.99 -4.18 16.46 16 18 H -0.28 -6.44 7.10 56.52 0.40 -6.03 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.24 -5.38 5.66 56.52 0.32 -5.06 16 21 C -0.15 -2.88 7.11 -25.92 -0.18 -3.07 16 22 C -0.12 -2.21 7.80 -25.92 -0.20 -2.41 16 23 C -0.13 -2.64 6.11 -25.93 -0.16 -2.80 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 26 H 0.11 1.91 6.00 -51.93 -0.31 1.60 16 27 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.16 2.44 7.73 -52.49 -0.41 2.03 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 32 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.45 5.78 -51.93 -0.30 1.15 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -29.86 307.63 -7.21 -37.07 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -4.03 Total: 2.61 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -2.26 Total: -7.73 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.67 Total: -31.88 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.53 Total: -19.22 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.18 Total: 16.46 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.86 -7.21 -37.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525498359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.780 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds