Wall clock time and date at job start Tue Mar 31 2020 07:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38138 * 120.48377 * 2 1 4 4 N 1.31817 * 120.91700 * 180.29267 * 3 2 1 5 5 C 1.31921 * 122.04024 * 359.71364 * 4 3 2 6 6 Cl 1.73598 * 119.56364 * 179.97438 * 5 4 3 7 7 C 1.38307 * 120.86816 * 359.97438 * 5 4 3 8 8 C 1.39823 * 118.98373 * 0.02562 * 7 5 4 9 9 C 1.48048 * 120.91911 * 179.97438 * 8 7 5 10 10 O 1.21431 * 120.00056 * 173.85123 * 9 8 7 11 11 O 1.34667 * 120.00140 * 353.85540 * 9 8 7 12 12 C 1.45199 * 117.00095 * 185.24049 * 11 9 8 13 13 C 1.50697 * 112.85169 * 54.20733 * 12 11 9 14 14 H 1.08004 * 120.00058 * 243.46214 * 13 12 11 15 15 C 1.37874 * 120.00284 * 63.45762 * 13 12 11 16 16 N 1.31512 * 120.00130 * 187.21792 * 15 13 12 17 17 Si 1.86800 * 119.99876 * 7.22331 * 15 13 12 18 18 H 1.48507 * 109.47218 * 91.20198 * 17 15 13 19 19 H 1.48492 * 109.47386 * 211.20457 * 17 15 13 20 20 H 1.48500 * 109.47099 * 331.20689 * 17 15 13 21 21 C 1.53787 * 113.61145 * 282.90144 * 12 11 9 22 22 C 1.53782 * 87.07742 * 220.01919 * 21 12 11 23 23 C 1.53771 * 87.08344 * 25.43350 * 22 21 12 24 24 H 1.09000 * 109.46788 * 263.47593 * 1 2 3 25 25 H 1.08998 * 109.47444 * 23.46597 * 1 2 3 26 26 H 1.08995 * 109.47105 * 143.47228 * 1 2 3 27 27 H 1.07998 * 119.54386 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.50816 * 180.02562 * 7 5 4 29 29 H 0.97001 * 119.99632 * 179.97438 * 16 15 13 30 30 H 1.08993 * 113.61333 * 334.56819 * 21 12 11 31 31 H 1.08996 * 113.61119 * 105.47359 * 21 12 11 32 32 H 1.09000 * 113.61659 * 270.88135 * 22 21 12 33 33 H 1.09002 * 113.68861 * 139.99446 * 22 21 12 34 34 H 1.09007 * 113.61349 * 220.01506 * 23 22 21 35 35 H 1.09005 * 113.69651 * 89.12930 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1904 0.0000 4 7 3.5259 1.2004 -0.0058 5 6 4.2342 0.0875 -0.0062 6 17 5.9680 0.1756 -0.0146 7 6 3.6137 -1.1486 0.0000 8 6 2.2167 -1.2053 0.0063 9 6 1.5081 -2.5052 0.0125 10 8 0.3000 -2.5377 0.1304 11 8 2.2035 -3.6517 -0.1127 12 6 1.4362 -4.8801 -0.2160 13 6 0.4148 -4.8407 -1.3234 14 1 -0.6376 -4.9061 -1.0899 15 6 0.8239 -4.7212 -2.6346 16 7 -0.0653 -4.5441 -3.5873 17 14 2.6411 -4.8109 -3.0580 18 1 3.0106 -6.2176 -3.3579 19 1 2.9151 -3.9631 -4.2459 20 1 3.4422 -4.3235 -1.9065 21 6 0.8714 -5.3685 1.1284 22 6 1.2322 -6.7923 0.6730 23 6 2.3039 -6.1496 -0.2231 24 1 -0.3633 -0.1168 1.0210 25 1 -0.3634 0.9426 -0.4092 26 1 -0.3633 -0.8258 -0.6116 27 1 1.6683 2.1260 0.0004 28 1 4.1993 -2.0560 0.0001 29 1 0.2226 -4.4597 -4.5097 30 1 1.4432 -5.0281 1.9917 31 1 -0.2004 -5.2035 1.2375 32 1 0.4368 -7.2874 0.1160 33 1 1.6435 -7.4152 1.4674 34 1 2.3885 -6.6152 -1.2051 35 1 3.2680 -6.0224 0.2694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525498359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:13 Heat of formation + Delta-G solvation = -44.105068 kcal Electronic energy + Delta-G solvation = -21956.934112 eV Core-core repulsion = 18560.452537 eV Total energy + Delta-G solvation = -3396.481576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.96991 -40.92952 -39.06134 -37.78362 -36.43410 -34.57199 -34.49505 -33.31231 -28.88937 -28.36811 -26.64565 -26.38473 -24.71572 -23.47897 -22.08195 -20.50971 -19.51391 -18.56701 -17.96015 -17.34888 -17.08059 -16.55804 -16.46227 -16.34373 -15.60776 -15.54700 -14.90837 -14.88588 -14.72125 -14.13178 -13.71891 -13.53117 -13.25301 -12.94178 -12.86785 -12.83099 -12.62066 -12.41808 -12.37256 -12.05298 -11.85880 -11.68123 -11.49200 -11.17150 -11.09487 -10.85146 -10.55948 -10.53336 -9.94920 -8.43751 -6.53050 -0.62210 -0.29082 0.61610 1.25622 1.28271 1.48065 1.60804 1.91332 2.26546 2.50268 2.93340 3.26294 3.51038 3.58197 3.69154 3.83242 3.85272 3.96445 4.14593 4.22926 4.36255 4.52468 4.59345 4.75788 4.79475 4.84293 4.94643 5.02404 5.12265 5.18614 5.21691 5.36254 5.51868 5.61048 5.79441 6.27072 6.42516 6.57301 7.01876 7.17679 8.70688 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.006060 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.944618 B = 4619.553267 C = 4937.912612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C 0.124 3.876 4 N -0.466 5.466 5 C 0.149 3.851 6 Cl -0.016 7.016 7 C -0.103 4.103 8 C -0.084 4.084 9 C 0.495 3.505 10 O -0.493 6.493 11 O -0.362 6.362 12 C 0.179 3.821 13 C -0.501 4.501 14 H 0.036 0.964 15 C 0.032 3.968 16 N -0.927 5.927 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.299 1.299 20 H -0.214 1.214 21 C -0.142 4.142 22 C -0.109 4.109 23 C -0.129 4.129 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.061 0.939 27 H 0.216 0.784 28 H 0.162 0.838 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.195 7.708 9.192 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.078 4.078 3 C -0.034 4.034 4 N -0.178 5.178 5 C -0.013 4.013 6 Cl 0.013 6.987 7 C -0.124 4.124 8 C -0.093 4.093 9 C 0.338 3.662 10 O -0.381 6.381 11 O -0.280 6.280 12 C 0.145 3.855 13 C -0.538 4.538 14 H 0.054 0.946 15 C -0.168 4.168 16 N -0.565 5.565 17 Si 0.734 3.266 18 H -0.184 1.184 19 H -0.226 1.226 20 H -0.136 1.136 21 C -0.180 4.180 22 C -0.147 4.147 23 C -0.166 4.166 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.080 0.920 27 H 0.233 0.767 28 H 0.180 0.820 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.408 8.426 9.075 15.552 hybrid contribution -0.182 -0.987 -0.913 1.356 sum 9.226 7.440 8.162 14.391 Atomic orbital electron populations 1.20988 0.87826 1.04321 1.03947 1.21492 0.99508 0.92024 0.94785 1.23205 0.87299 0.98378 0.94489 1.66968 1.09309 1.30387 1.11107 1.21535 0.88372 0.89466 1.01956 1.98398 1.05206 1.98575 1.96522 1.22196 0.93612 0.99100 0.97524 1.19829 0.93672 0.92047 1.03724 1.20937 0.85887 0.85062 0.74294 1.90751 1.15499 1.87981 1.43837 1.86554 1.43352 1.16166 1.81944 1.21837 0.90561 0.78165 0.94937 1.20783 0.92423 1.50653 0.89915 0.94607 1.25778 1.02009 0.92890 0.96150 1.70059 1.36461 1.48720 1.01277 0.86333 0.81817 0.79217 0.79283 1.18446 1.22584 1.13588 1.23338 1.00375 0.97562 0.96728 1.22418 0.98112 0.95063 0.99066 1.23334 0.98824 0.94033 1.00396 0.89415 0.87875 0.91988 0.76735 0.82032 0.92297 0.89263 0.93376 0.90969 0.87913 0.92347 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 8.81 71.24 0.63 -2.54 16 2 C -0.08 -2.20 5.93 -19.49 -0.12 -2.31 16 3 C 0.12 2.89 10.83 84.67 0.92 3.81 16 4 N -0.47 -12.48 10.31 -186.85 -1.93 -14.40 16 5 C 0.15 4.18 7.27 84.70 0.62 4.79 16 6 Cl -0.02 -0.37 29.10 -2.72 -0.08 -0.45 16 7 C -0.10 -3.18 9.47 22.67 0.21 -2.97 16 8 C -0.08 -2.92 5.91 -19.90 -0.12 -3.04 16 9 C 0.50 21.32 7.43 70.43 0.52 21.85 16 10 O -0.49 -23.70 12.03 20.06 0.24 -23.46 16 11 O -0.36 -15.81 7.45 -55.76 -0.42 -16.23 16 12 C 0.18 8.07 0.25 -11.01 0.00 8.07 16 13 C -0.50 -27.97 7.13 25.60 0.18 -27.78 16 14 H 0.04 2.30 8.05 -2.91 -0.02 2.28 16 15 C 0.03 1.85 5.47 84.65 0.46 2.31 16 16 N -0.93 -57.11 13.96 21.45 0.30 -56.81 16 17 Si 0.91 42.74 24.61 68.60 1.69 44.43 16 18 H -0.26 -11.44 7.10 99.48 0.71 -10.73 16 19 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 20 H -0.21 -9.19 5.66 99.48 0.56 -8.63 16 21 C -0.14 -5.52 7.11 31.12 0.22 -5.30 16 22 C -0.11 -3.69 7.80 31.12 0.24 -3.44 16 23 C -0.13 -4.82 6.11 31.12 0.19 -4.63 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.10 2.02 8.05 -2.39 -0.02 2.00 16 26 H 0.06 2.33 6.00 -2.39 -0.01 2.31 16 27 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 28 H 0.16 4.71 7.73 -2.91 -0.02 4.69 16 29 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.06 2.32 5.78 -2.38 -0.01 2.31 16 35 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 Total: -1.00 -68.85 307.63 4.74 -64.11 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.97 Total: 14.01 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 3.96 Total: -11.19 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.63 Total: -71.22 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.17 Total: -39.68 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.69 Total: 44.43 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -68.85 4.74 -64.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525498359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.001 kcal (2) G-P(sol) polarization free energy of solvation -68.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds