Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86796 * 120.00055 * 2 1 4 4 H 1.48498 * 109.46873 * 269.99497 * 3 2 1 5 5 H 1.48495 * 109.47237 * 29.99756 * 3 2 1 6 6 H 1.48505 * 109.47176 * 149.99865 * 3 2 1 7 7 C 1.38655 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99944 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00285 * 180.02562 * 7 2 1 10 10 C 1.35743 * 117.00323 * 185.06067 * 9 7 2 11 11 C 1.38884 * 120.06847 * 354.45893 * 10 9 7 12 12 C 1.38100 * 119.93123 * 180.02562 * 11 10 9 13 13 C 1.38309 * 120.06951 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.92835 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47436 * 90.00063 * 14 13 12 16 16 O 1.21280 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00040 * 179.97438 * 15 14 13 18 18 C 1.46498 * 119.99904 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.47301 * 180.02562 * 18 17 15 20 20 C 1.31154 * 120.00245 * 124.99997 * 19 18 17 21 21 Cl 1.73595 * 120.00230 * 359.97438 * 20 19 18 22 22 C 1.38300 * 120.13476 * 0.25178 * 13 12 11 23 23 C 1.38103 * 120.07235 * 359.45128 * 22 13 12 24 24 H 0.97002 * 119.99895 * 0.02562 * 1 2 3 25 25 H 1.07996 * 120.03050 * 0.02562 * 11 10 9 26 26 H 1.08003 * 119.96708 * 180.02562 * 12 11 10 27 27 H 1.08999 * 109.46626 * 209.99947 * 14 13 12 28 28 H 1.09004 * 109.47318 * 329.99490 * 14 13 12 29 29 H 0.96993 * 120.00031 * 359.97438 * 17 15 14 30 30 H 1.09007 * 109.47104 * 299.99606 * 18 17 15 31 31 H 1.08996 * 109.47508 * 59.99551 * 18 17 15 32 32 H 1.08003 * 119.99557 * 304.99651 * 19 18 17 33 33 H 1.08001 * 119.99996 * 180.02562 * 20 19 18 34 34 H 1.08004 * 119.96372 * 179.70276 * 22 13 12 35 35 H 1.07998 * 120.03412 * 180.26808 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0011 10 6 3.9734 -2.4057 -0.1051 11 6 3.2234 -3.5745 -0.0921 12 6 3.8534 -4.7987 -0.1998 13 6 5.2298 -4.8616 -0.3200 14 6 5.9140 -6.1992 -0.4367 15 6 6.0215 -6.5835 -1.8898 16 8 5.5850 -5.8441 -2.7464 17 7 6.6026 -7.7487 -2.2376 18 6 6.7066 -8.1224 -3.6503 19 6 7.3909 -9.4601 -3.7670 20 6 6.8081 -10.4407 -4.4141 21 17 5.2479 -10.1981 -5.1357 22 6 5.9799 -3.6997 -0.3274 23 6 5.3553 -2.4722 -0.2263 24 1 -0.4850 0.8401 -0.0004 25 1 2.1486 -3.5260 0.0020 26 1 3.2706 -5.7080 -0.1902 27 1 6.9119 -6.1359 -0.0028 28 1 5.3332 -6.9522 0.0963 29 1 6.9520 -8.3398 -1.5525 30 1 5.7084 -8.1864 -4.0836 31 1 7.2866 -7.3694 -4.1837 32 1 8.3614 -9.6111 -3.3178 33 1 7.2983 -11.3994 -4.4974 34 1 7.0550 -3.7523 -0.4165 35 1 5.9414 -1.5651 -0.2365 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539515376.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = -27.905958 kcal Electronic energy + Delta-G solvation = -19920.260162 eV Core-core repulsion = 16524.481032 eV Total energy + Delta-G solvation = -3395.779130 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.85350 -38.92071 -37.40445 -36.65457 -35.48405 -32.89459 -32.43018 -31.42155 -30.18468 -27.56235 -25.86996 -24.63914 -22.05102 -21.09132 -20.81481 -19.87901 -17.84249 -17.37277 -17.10385 -16.77928 -15.85961 -15.28452 -14.79974 -14.58890 -14.31175 -13.93972 -13.76592 -13.62143 -13.38225 -13.12602 -12.69100 -12.59855 -12.31299 -12.26869 -12.14841 -11.60114 -11.25807 -11.02683 -10.89376 -10.71849 -10.63009 -10.11436 -9.97230 -9.56215 -9.33430 -9.11097 -8.81431 -8.18186 -7.25526 -6.37116 -4.03371 1.24183 1.87078 2.21131 2.21693 2.76528 3.24411 3.27608 3.30932 3.43949 4.19500 4.27944 4.51302 4.70162 4.90034 4.96552 5.14440 5.15748 5.21483 5.27994 5.43049 5.63015 5.64064 5.71125 5.77572 5.80940 6.18536 6.29023 6.38400 6.61891 6.84884 7.07344 7.27353 7.36072 7.42804 7.67158 7.85617 8.08962 8.30585 8.98382 9.61356 10.70694 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.002636 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.614252 B =10618.668640 C =11125.022177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.062 3.938 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.388 4.388 8 H 0.106 0.894 9 O -0.218 6.218 10 C 0.162 3.838 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.162 4.162 14 C -0.080 4.080 15 C 0.508 3.492 16 O -0.518 6.518 17 N -0.737 5.737 18 C 0.134 3.866 19 C -0.161 4.161 20 C -0.092 4.092 21 Cl -0.083 7.083 22 C -0.062 4.062 23 C -0.191 4.191 24 H 0.279 0.721 25 H 0.133 0.867 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.399 0.601 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.110 0.890 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.395 -21.195 -4.135 27.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.464 4.464 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.110 3.890 11 C -0.238 4.238 12 C -0.076 4.076 13 C -0.163 4.163 14 C -0.120 4.120 15 C 0.295 3.705 16 O -0.391 6.391 17 N -0.391 5.391 18 C 0.011 3.989 19 C -0.180 4.180 20 C -0.137 4.137 21 Cl -0.055 7.055 22 C -0.080 4.080 23 C -0.211 4.211 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.125 0.875 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.128 0.872 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.798 -20.228 -4.813 26.114 hybrid contribution 0.291 0.230 0.171 0.408 sum 16.089 -19.998 -4.642 26.084 Atomic orbital electron populations 1.69651 1.05563 1.28423 1.48268 1.24466 0.95028 0.98814 0.95737 0.86177 0.80302 0.81430 0.78966 1.19890 1.20825 1.18364 1.20777 0.76929 0.96635 1.52044 0.87631 1.83566 1.22593 1.25793 1.80372 1.19122 0.91712 0.85472 0.92702 1.21227 1.01045 0.91805 1.09752 1.20573 0.93264 0.96742 0.97043 1.18704 0.93582 0.92567 1.11468 1.20420 1.02285 0.97043 0.92274 1.21054 0.77033 0.80236 0.92175 1.90762 1.45817 1.50565 1.52001 1.46013 1.63054 1.22455 1.07619 1.20516 1.01698 0.92981 0.83753 1.23273 1.00381 0.94736 0.99631 1.24635 0.88388 1.00672 0.99985 1.98399 1.28264 1.96799 1.82008 1.20398 0.98125 0.91370 0.98125 1.20148 0.91955 0.97732 1.11218 0.91102 0.84965 0.87521 0.88862 0.88828 0.76769 0.89740 0.90260 0.84141 0.83022 0.87209 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.00 13.96 55.48 0.77 -25.23 16 2 C 0.06 1.80 5.49 -17.51 -0.10 1.70 16 3 Si 0.91 22.20 28.62 -169.99 -4.86 17.33 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16 8 H 0.11 3.13 5.44 -52.49 -0.29 2.84 16 9 O -0.22 -5.95 8.59 0.07 0.00 -5.95 16 10 C 0.16 3.90 6.65 -39.10 -0.26 3.64 16 11 C -0.22 -4.95 9.17 -39.39 -0.36 -5.31 16 12 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 13 C -0.16 -2.76 4.38 -104.58 -0.46 -3.21 16 14 C -0.08 -0.96 5.83 -29.04 -0.17 -1.13 16 15 C 0.51 6.83 7.82 -10.99 -0.09 6.74 16 16 O -0.52 -9.73 16.03 5.56 0.09 -9.64 16 17 N -0.74 -6.79 5.55 -61.47 -0.34 -7.13 16 18 C 0.13 1.23 5.97 -5.19 -0.03 1.19 16 19 C -0.16 -0.90 9.64 -36.06 -0.35 -1.24 16 20 C -0.09 -0.51 10.82 28.97 0.31 -0.20 16 21 Cl -0.08 -0.70 26.96 -51.86 -1.40 -2.10 16 22 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 23 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 24 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.13 3.12 5.64 -52.49 -0.30 2.83 16 26 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 27 H 0.09 0.85 8.08 -51.93 -0.42 0.43 16 28 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.40 2.28 8.46 -40.82 -0.35 1.93 16 30 H 0.08 0.95 6.00 -51.92 -0.31 0.64 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 33 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 324.57 15.07 4.89 4.89 Total: -1.00 -34.25 324.57 -6.95 -41.19 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.75 Total: 2.73 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.35 Total: -16.10 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 0.43 Total: -32.36 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.09 Total: -15.59 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.86 Total: 17.33 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.40 Total: -2.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.25 -6.95 -41.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539515376.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.288 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds