Wall clock time and date at job start Tue Mar 31 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00074 * 2 1 4 4 C 1.50699 * 109.47119 * 269.99820 * 3 2 1 5 5 O 1.20820 * 120.00129 * 0.02562 * 4 3 2 6 6 O 1.34232 * 119.99875 * 180.02562 * 4 3 2 7 7 C 1.34776 * 119.99775 * 180.02562 * 2 1 3 8 8 O 1.21551 * 120.00377 * 174.64182 * 7 2 1 9 9 C 1.47859 * 120.00085 * 354.63914 * 7 2 1 10 10 C 1.39676 * 120.10348 * 329.41255 * 9 7 2 11 11 C 1.38041 * 120.04063 * 180.02562 * 10 9 7 12 12 C 1.38180 * 120.24448 * 359.68129 * 11 10 9 13 13 C 1.39179 * 120.19939 * 0.59663 * 12 11 10 14 14 S 1.76199 * 120.02271 * 179.69839 * 13 12 11 15 15 C 1.76201 * 100.00039 * 264.83325 * 14 13 12 16 16 H 1.08003 * 120.00094 * 5.02060 * 15 14 13 17 17 C 1.38726 * 119.99931 * 185.02045 * 15 14 13 18 18 N 1.31617 * 120.00298 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47331 * 60.00001 * 19 17 15 21 21 H 1.48499 * 109.47213 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47249 * 299.99700 * 19 17 15 23 23 C 1.38878 * 119.95836 * 359.42588 * 13 12 11 24 24 H 1.09000 * 109.47342 * 271.93861 * 1 2 3 25 25 H 1.09004 * 109.47069 * 31.93609 * 1 2 3 26 26 H 1.08998 * 109.47324 * 151.93397 * 1 2 3 27 27 H 1.08991 * 109.47389 * 29.99984 * 3 2 1 28 28 H 1.09005 * 109.46697 * 150.00066 * 3 2 1 29 29 H 0.96703 * 116.99924 * 180.02562 * 6 4 3 30 30 H 1.07999 * 119.97884 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87441 * 179.97438 * 11 10 9 32 32 H 1.07992 * 119.90128 * 180.29943 * 12 11 10 33 33 H 0.97003 * 120.00692 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.12058 * 180.25625 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0558 1.0240 -2.3392 6 8 3.1090 2.8464 -1.6661 7 6 2.1388 -1.1672 -0.0005 8 8 3.3503 -1.1696 -0.0988 9 6 1.4043 -2.4450 0.1185 10 6 0.2072 -2.5007 0.8360 11 6 -0.4772 -3.6943 0.9468 12 6 0.0140 -4.8367 0.3442 13 6 1.2089 -4.7940 -0.3683 14 16 1.8350 -6.2553 -1.1281 15 6 2.9403 -6.8045 0.1294 16 1 2.9856 -6.2830 1.0741 17 6 3.7524 -7.9068 -0.0940 18 7 3.6976 -8.5421 -1.2454 19 14 4.9248 -8.4886 1.2389 20 1 4.1520 -8.8526 2.4535 21 1 5.6750 -9.6752 0.7549 22 1 5.8800 -7.4001 1.5677 23 6 1.9045 -3.5977 -0.4847 24 1 -0.3634 0.0348 1.0271 25 1 -0.3633 0.8721 -0.5436 26 1 -0.3634 -0.9068 -0.4835 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5139 29 1 3.2458 3.0840 -2.5934 30 1 -0.1832 -1.6093 1.3043 31 1 -1.4023 -3.7344 1.5025 32 1 -0.5284 -5.7666 0.4303 33 1 4.2652 -9.3131 -1.4015 34 1 2.8298 -3.5606 -1.0405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573864562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:47 Heat of formation + Delta-G solvation = -84.563251 kcal Electronic energy + Delta-G solvation = -20632.787779 eV Core-core repulsion = 17236.595511 eV Total energy + Delta-G solvation = -3396.192268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85061 -39.81030 -37.87691 -36.41297 -35.63298 -32.49321 -31.49599 -30.62423 -28.99109 -26.88452 -25.55165 -23.59097 -22.39617 -21.77554 -19.74132 -18.40862 -18.04666 -17.18705 -17.09519 -16.56597 -16.03147 -15.75928 -15.08463 -14.86734 -14.82693 -14.22280 -13.76176 -13.37585 -13.33626 -13.20009 -12.95050 -12.80056 -12.52088 -12.09018 -11.71222 -11.41394 -11.19708 -11.12037 -11.05605 -10.92270 -10.68877 -9.99426 -9.87614 -9.13552 -9.09152 -8.98122 -8.59849 -8.01101 -6.70366 -6.26901 -4.01148 1.19175 1.66059 1.98653 2.31204 2.88626 3.09321 3.22731 3.25483 3.28219 3.47736 4.04122 4.25129 4.39616 4.74909 4.78165 4.96135 4.99062 5.09293 5.13867 5.21735 5.32549 5.48655 5.49596 5.71170 5.86509 5.93342 6.12015 6.24955 6.26169 6.55794 6.63536 6.90681 7.09682 7.20563 7.59157 7.65217 8.06973 8.34303 9.18864 10.79785 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.003823 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.776707 B = 7322.789561 C = 7906.845712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.128 3.872 4 C 0.458 3.542 5 O -0.501 6.501 6 O -0.519 6.519 7 C 0.572 3.428 8 O -0.525 6.525 9 C -0.151 4.151 10 C -0.100 4.100 11 C -0.142 4.142 12 C -0.055 4.055 13 C -0.106 4.106 14 S -0.035 6.035 15 C -0.520 4.520 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.871 5.871 19 Si 0.921 3.079 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.020 4.020 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.410 0.590 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.270 0.730 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 20.397 4.191 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.003 3.997 4 C 0.297 3.703 5 O -0.387 6.387 6 O -0.331 6.331 7 C 0.363 3.637 8 O -0.401 6.401 9 C -0.156 4.156 10 C -0.118 4.118 11 C -0.162 4.162 12 C -0.076 4.076 13 C -0.216 4.216 14 S 0.200 5.800 15 C -0.668 4.668 16 H 0.094 0.906 17 C -0.135 4.135 18 N -0.506 5.506 19 Si 0.747 3.253 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.198 1.198 23 C -0.041 4.041 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.269 0.731 30 H 0.149 0.851 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.271 19.398 3.119 21.318 hybrid contribution 1.054 0.464 1.246 1.697 sum -7.217 19.862 4.365 21.579 Atomic orbital electron populations 1.22263 0.78475 1.04356 1.01612 1.47419 1.07401 1.04332 1.74867 1.20805 1.01470 0.87164 0.90271 1.24236 0.74251 0.78033 0.93765 1.90764 1.47888 1.53359 1.46679 1.84505 1.70996 1.41128 1.36502 1.18610 0.86986 0.83406 0.74712 1.90790 1.13946 1.86960 1.48416 1.19674 0.97459 0.93057 1.05384 1.21609 0.93573 0.98577 0.98059 1.21079 1.00615 0.92743 1.01724 1.21959 0.94812 0.98149 0.92723 1.22828 0.97228 1.00379 1.01207 1.83594 1.52459 1.17396 1.26550 1.22808 1.25863 1.17012 1.01107 0.90623 1.24994 0.96483 0.95588 0.96436 1.69973 1.38496 1.19596 1.22552 0.86177 0.80169 0.78200 0.80791 1.19796 1.20735 1.19760 1.21890 0.97954 0.89958 0.94338 0.91665 0.91398 0.89198 0.85948 0.85506 0.73072 0.85123 0.85778 0.85072 0.92002 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 8.77 59.85 0.52 1.16 16 2 N -0.61 -7.24 2.36 -184.08 -0.43 -7.67 16 3 C 0.13 1.19 5.97 -5.19 -0.03 1.16 16 4 C 0.46 5.13 8.40 36.01 0.30 5.44 16 5 O -0.50 -7.74 17.19 -18.75 -0.32 -8.07 16 6 O -0.52 -4.23 13.42 -39.26 -0.53 -4.75 16 7 C 0.57 9.54 7.42 -12.32 -0.09 9.45 16 8 O -0.53 -10.64 16.36 5.32 0.09 -10.56 16 9 C -0.15 -2.60 5.31 -105.00 -0.56 -3.15 16 10 C -0.10 -1.35 7.60 -39.12 -0.30 -1.65 16 11 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 12 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 13 C -0.11 -2.29 5.45 -38.99 -0.21 -2.50 16 14 S -0.03 -0.90 21.41 -107.50 -2.30 -3.20 16 15 C -0.52 -14.90 9.46 30.91 0.29 -14.61 16 16 H 0.08 2.15 7.79 -52.48 -0.41 1.74 16 17 C 0.07 2.10 5.49 -17.46 -0.10 2.00 16 18 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 19 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.02 -0.41 9.35 -38.92 -0.36 -0.77 16 24 H 0.07 0.37 6.83 -51.93 -0.35 0.02 16 25 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.09 0.88 5.75 -51.93 -0.30 0.58 16 27 H 0.12 0.60 8.07 -51.93 -0.42 0.18 16 28 H 0.13 1.22 7.50 -51.93 -0.39 0.83 16 29 H 0.41 1.83 9.10 45.56 0.41 2.25 16 30 H 0.13 1.26 4.94 -52.49 -0.26 1.00 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.13 3.05 7.93 -52.48 -0.42 2.63 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -37.01 318.27 -6.84 -43.84 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -2.53 Total: 1.14 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.31 Total: -7.23 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.30 Total: -32.66 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.76 Total: -23.38 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -37.01 -6.84 -43.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573864562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.719 kcal (2) G-P(sol) polarization free energy of solvation -37.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds