Wall clock time and date at job start Tue Mar 31 2020 06:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 120.00074 * 2 1 4 4 C 1.50699 * 109.47119 * 269.99820 * 3 2 1 5 5 O 1.20820 * 120.00129 * 0.02562 * 4 3 2 6 6 O 1.34232 * 119.99875 * 180.02562 * 4 3 2 7 7 C 1.34776 * 119.99775 * 180.02562 * 2 1 3 8 8 O 1.21551 * 120.00377 * 174.64182 * 7 2 1 9 9 C 1.47859 * 120.00085 * 354.63914 * 7 2 1 10 10 C 1.39676 * 120.10348 * 329.41255 * 9 7 2 11 11 C 1.38041 * 120.04063 * 180.02562 * 10 9 7 12 12 C 1.38180 * 120.24448 * 359.68129 * 11 10 9 13 13 C 1.39179 * 120.19939 * 0.59663 * 12 11 10 14 14 S 1.76199 * 120.02271 * 179.69839 * 13 12 11 15 15 C 1.76201 * 100.00039 * 264.83325 * 14 13 12 16 16 H 1.08003 * 120.00094 * 5.02060 * 15 14 13 17 17 C 1.38726 * 119.99931 * 185.02045 * 15 14 13 18 18 N 1.31617 * 120.00298 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99806 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47331 * 60.00001 * 19 17 15 21 21 H 1.48499 * 109.47213 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47249 * 299.99700 * 19 17 15 23 23 C 1.38878 * 119.95836 * 359.42588 * 13 12 11 24 24 H 1.09000 * 109.47342 * 271.93861 * 1 2 3 25 25 H 1.09004 * 109.47069 * 31.93609 * 1 2 3 26 26 H 1.08998 * 109.47324 * 151.93397 * 1 2 3 27 27 H 1.08991 * 109.47389 * 29.99984 * 3 2 1 28 28 H 1.09005 * 109.46697 * 150.00066 * 3 2 1 29 29 H 0.96703 * 116.99924 * 180.02562 * 6 4 3 30 30 H 1.07999 * 119.97884 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87441 * 179.97438 * 11 10 9 32 32 H 1.07992 * 119.90128 * 180.29943 * 12 11 10 33 33 H 0.97003 * 120.00692 * 180.02562 * 18 17 15 34 34 H 1.08003 * 120.12058 * 180.25625 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0558 1.0240 -2.3392 6 8 3.1090 2.8464 -1.6661 7 6 2.1388 -1.1672 -0.0005 8 8 3.3503 -1.1696 -0.0988 9 6 1.4043 -2.4450 0.1185 10 6 0.2072 -2.5007 0.8360 11 6 -0.4772 -3.6943 0.9468 12 6 0.0140 -4.8367 0.3442 13 6 1.2089 -4.7940 -0.3683 14 16 1.8350 -6.2553 -1.1281 15 6 2.9403 -6.8045 0.1294 16 1 2.9856 -6.2830 1.0741 17 6 3.7524 -7.9068 -0.0940 18 7 3.6976 -8.5421 -1.2454 19 14 4.9248 -8.4886 1.2389 20 1 4.1520 -8.8526 2.4535 21 1 5.6750 -9.6752 0.7549 22 1 5.8800 -7.4001 1.5677 23 6 1.9045 -3.5977 -0.4847 24 1 -0.3634 0.0348 1.0271 25 1 -0.3633 0.8721 -0.5436 26 1 -0.3634 -0.9068 -0.4835 27 1 1.6085 2.0283 0.5138 28 1 3.1499 1.1383 0.5139 29 1 3.2458 3.0840 -2.5934 30 1 -0.1832 -1.6093 1.3043 31 1 -1.4023 -3.7344 1.5025 32 1 -0.5284 -5.7666 0.4303 33 1 4.2652 -9.3131 -1.4015 34 1 2.8298 -3.5606 -1.0405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573864562.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:46 Heat of formation + Delta-G solvation = -111.650992 kcal Electronic energy + Delta-G solvation = -20633.962391 eV Core-core repulsion = 17236.595511 eV Total energy + Delta-G solvation = -3397.366881 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.87459 -40.86949 -39.18165 -37.30404 -36.66064 -34.67027 -32.70481 -31.98990 -29.91711 -27.81147 -27.73277 -24.74388 -23.74862 -22.77971 -20.91273 -19.85847 -19.23941 -18.57829 -18.01397 -17.75024 -17.09197 -16.94567 -16.80918 -16.32788 -16.15502 -15.47652 -15.16651 -14.72043 -14.57344 -14.34760 -13.92673 -13.87758 -13.59092 -13.25166 -13.21321 -12.97356 -12.73431 -12.60040 -12.57816 -12.34040 -11.88052 -11.74670 -11.30181 -11.19101 -10.71174 -10.10773 -9.87476 -9.67580 -8.82379 -8.40449 -6.21067 -0.14785 0.24545 1.13319 1.26357 1.35357 1.38000 1.45000 1.69163 1.77119 2.22826 2.29966 2.73333 2.92381 3.36497 3.41037 3.93519 3.94395 4.08559 4.16290 4.29454 4.31329 4.38732 4.48325 4.65360 4.70345 4.89784 4.91000 5.19240 5.26098 5.33420 5.36463 5.50081 5.56704 5.86952 6.05936 6.14016 6.84682 6.95404 6.99507 8.66418 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.020678 B = 0.003823 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.776707 B = 7322.789561 C = 7906.845712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.595 5.595 3 C 0.122 3.878 4 C 0.461 3.539 5 O -0.553 6.553 6 O -0.509 6.509 7 C 0.565 3.435 8 O -0.578 6.578 9 C -0.156 4.156 10 C -0.069 4.069 11 C -0.119 4.119 12 C -0.063 4.063 13 C -0.129 4.129 14 S -0.097 6.097 15 C -0.539 4.539 16 H 0.066 0.934 17 C 0.021 3.979 18 N -0.906 5.906 19 Si 0.992 3.008 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.050 4.050 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.181 0.819 28 H 0.123 0.877 29 H 0.426 0.574 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.136 0.864 33 H 0.274 0.726 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.908 23.217 7.237 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.327 5.327 3 C -0.002 4.002 4 C 0.303 3.697 5 O -0.444 6.444 6 O -0.321 6.321 7 C 0.355 3.645 8 O -0.458 6.458 9 C -0.160 4.160 10 C -0.087 4.087 11 C -0.139 4.139 12 C -0.084 4.084 13 C -0.240 4.240 14 S 0.138 5.862 15 C -0.686 4.686 16 H 0.085 0.915 17 C -0.185 4.185 18 N -0.543 5.543 19 Si 0.813 3.187 20 H -0.183 1.183 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.072 4.072 24 H 0.128 0.872 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.198 0.802 28 H 0.141 0.859 29 H 0.288 0.712 30 H 0.204 0.796 31 H 0.198 0.802 32 H 0.154 0.846 33 H 0.083 0.917 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.609 22.284 6.160 25.437 hybrid contribution 1.650 -0.141 0.283 1.680 sum -8.959 22.143 6.443 24.740 Atomic orbital electron populations 1.22628 0.75875 1.04845 1.04554 1.47465 1.09031 1.03698 1.72508 1.21242 1.02382 0.87086 0.89460 1.24622 0.73193 0.77858 0.94033 1.90760 1.50323 1.54964 1.48313 1.84470 1.69892 1.39693 1.38086 1.18630 0.86427 0.84670 0.74730 1.90758 1.16142 1.87801 1.51147 1.19830 0.98862 0.92165 1.05191 1.22220 0.90966 1.00438 0.95038 1.21616 1.01762 0.90802 0.99671 1.22084 0.93356 1.00331 0.92643 1.22464 0.99455 0.97872 1.04225 1.83450 1.52967 1.21223 1.28540 1.23043 1.26721 1.17510 1.01300 0.91545 1.26008 0.98070 0.95470 0.98929 1.70098 1.39475 1.20137 1.24543 0.85104 0.77748 0.77822 0.78009 1.18314 1.19399 1.19718 1.21541 0.97406 0.91801 0.96461 0.87244 0.89142 0.90628 0.80208 0.85891 0.71193 0.79620 0.80248 0.84645 0.91652 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 8.77 127.77 1.12 1.83 16 2 N -0.59 -12.46 2.36 -854.57 -2.02 -14.47 16 3 C 0.12 1.89 5.97 85.63 0.51 2.40 16 4 C 0.46 9.57 8.40 71.24 0.60 10.17 16 5 O -0.55 -16.97 17.19 21.98 0.38 -16.59 16 6 O -0.51 -7.20 13.42 -51.43 -0.69 -7.89 16 7 C 0.56 18.59 7.42 86.79 0.64 19.24 16 8 O -0.58 -24.42 16.36 -3.88 -0.06 -24.49 16 9 C -0.16 -5.26 5.31 -20.11 -0.11 -5.37 16 10 C -0.07 -1.57 7.60 22.57 0.17 -1.40 16 11 C -0.12 -2.82 10.02 22.21 0.22 -2.60 16 12 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 13 C -0.13 -5.85 5.45 22.65 0.12 -5.73 16 14 S -0.10 -5.42 21.41 -56.49 -1.21 -6.63 16 15 C -0.54 -32.48 9.46 67.94 0.64 -31.84 16 16 H 0.07 3.97 7.79 -2.91 -0.02 3.95 16 17 C 0.02 1.20 5.49 84.84 0.47 1.67 16 18 N -0.91 -55.72 13.22 21.63 0.29 -55.43 16 19 Si 0.99 45.59 29.55 68.60 2.03 47.61 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 C -0.05 -2.23 9.35 22.70 0.21 -2.01 16 24 H 0.11 0.37 6.83 -2.39 -0.02 0.36 16 25 H 0.09 0.73 8.09 -2.39 -0.02 0.72 16 26 H 0.08 1.14 5.75 -2.39 -0.01 1.13 16 27 H 0.18 0.70 8.07 -2.39 -0.02 0.68 16 28 H 0.12 2.11 7.50 -2.38 -0.02 2.10 16 29 H 0.43 3.10 9.10 -74.05 -0.67 2.43 16 30 H 0.19 2.20 4.94 -2.91 -0.01 2.18 16 31 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 34 H 0.09 4.76 7.93 -2.91 -0.02 4.73 16 Total: -1.00 -90.72 318.27 4.02 -86.70 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.48 Total: 6.82 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.82 Total: -15.63 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.73 Total: -69.91 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.38 Total: -48.97 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.21 Total: -6.63 kcal Total: -90.72 4.02 -86.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573864562.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.948 kcal (2) G-P(sol) polarization free energy of solvation -90.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds