Wall clock time and date at job start Tue Mar 31 2020 07:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48503 * 109.47041 * 273.45337 * 3 2 1 5 5 H 1.48506 * 109.47127 * 33.45047 * 3 2 1 6 6 H 1.48497 * 109.47261 * 153.45179 * 3 2 1 7 7 C 1.37876 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00207 * 10.06165 * 7 2 1 9 9 C 1.50704 * 119.99835 * 190.04751 * 7 2 1 10 10 H 1.08998 * 109.47478 * 334.76823 * 9 7 2 11 11 N 1.46500 * 109.46667 * 94.76898 * 9 7 2 12 12 C 1.34779 * 120.00090 * 205.00201 * 11 9 7 13 13 O 1.21281 * 119.99627 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99987 * 180.02562 * 12 11 9 15 15 H 1.08996 * 112.85197 * 12.38108 * 14 12 11 16 16 C 1.53782 * 113.61376 * 143.57861 * 14 12 11 17 17 C 1.53786 * 87.07829 * 89.19756 * 16 14 12 18 18 C 1.53783 * 113.61110 * 241.18584 * 14 12 11 19 19 H 1.09000 * 113.61629 * 156.25195 * 18 14 12 20 20 C 1.50702 * 113.61352 * 25.34609 * 18 14 12 21 21 O 1.20821 * 120.00287 * 23.27648 * 20 18 14 22 22 O 1.34236 * 119.99622 * 203.27121 * 20 18 14 23 23 C 1.53000 * 109.47146 * 214.76671 * 9 7 2 24 24 F 1.39904 * 109.46981 * 301.01939 * 23 9 7 25 25 F 1.39895 * 109.47252 * 61.02285 * 23 9 7 26 26 F 1.39905 * 109.46975 * 181.02212 * 23 9 7 27 27 H 0.97003 * 119.99605 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00335 * 24.99842 * 11 9 7 29 29 H 1.09001 * 113.61478 * 203.74326 * 16 14 12 30 30 H 1.08999 * 113.61361 * 334.65046 * 16 14 12 31 31 H 1.09003 * 113.61243 * 139.98147 * 17 16 14 32 32 H 1.08996 * 113.61467 * 270.79409 * 17 16 14 33 33 H 0.96699 * 116.99197 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4237 2.0885 -1.3976 5 1 1.4850 2.6305 0.7718 6 1 3.5813 1.4201 0.6257 7 6 2.0045 -1.1941 -0.0005 8 1 1.4769 -2.1221 -0.1643 9 6 3.4942 -1.2042 0.2272 10 1 3.9134 -0.2423 -0.0678 11 7 3.7696 -1.4426 1.6462 12 6 4.9256 -1.0128 2.1898 13 8 5.7380 -0.4292 1.5040 14 6 5.2091 -1.2585 3.6493 15 1 4.5168 -1.9688 4.1013 16 6 6.6866 -1.5639 3.9469 17 6 6.8854 -0.0478 4.1108 18 6 5.3898 0.0311 4.4673 19 1 5.1873 -0.0944 5.5309 20 6 4.6887 1.2258 3.8736 21 8 3.7495 1.0673 3.1302 22 8 5.1076 2.4660 4.1708 23 6 4.1304 -2.3159 -0.6096 24 9 3.5756 -3.5480 -0.2472 25 9 3.8872 -2.0759 -1.9662 26 9 5.5104 -2.3404 -0.3804 27 1 -0.4850 0.8401 0.0004 28 1 3.1199 -1.9096 2.1946 29 1 6.8393 -2.1263 4.8681 30 1 7.2248 -1.9857 3.0981 31 1 7.5464 0.2193 4.9353 32 1 7.1404 0.4621 3.1818 33 1 4.6263 3.2006 3.7662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:57 Heat of formation + Delta-G solvation = -262.748638 kcal Electronic energy + Delta-G solvation = -25817.171284 eV Core-core repulsion = 21428.642707 eV Total energy + Delta-G solvation = -4388.528578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.01584 -46.53236 -46.50806 -40.96562 -39.01164 -37.02343 -35.83130 -34.55660 -32.46153 -29.43188 -27.40287 -26.12302 -24.86985 -22.15934 -21.73390 -20.51515 -19.18457 -18.07183 -17.76137 -17.48922 -17.06426 -16.80136 -16.44784 -15.97201 -15.54826 -15.03414 -14.51388 -14.13931 -13.85858 -13.53285 -13.40148 -13.21059 -12.98375 -12.78628 -12.73354 -12.72019 -12.62589 -12.36792 -12.02914 -11.74541 -11.47131 -11.33067 -11.05067 -10.90333 -10.59899 -10.49511 -10.11802 -9.84394 -9.76070 -9.19533 -8.79724 -8.25335 -6.44826 -4.58581 2.43210 3.02453 3.22281 3.23239 3.31381 3.47465 3.69029 3.99600 4.25669 4.32955 4.55328 4.76117 4.79667 4.99324 5.23078 5.25132 5.34603 5.35132 5.51975 5.60227 5.69210 5.74599 5.93144 5.96764 6.30882 6.46988 6.69767 7.01985 7.27724 7.93805 8.09368 8.43416 8.59961 8.94995 9.13846 10.63075 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.008803 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.674972 B = 3180.084749 C = 4416.654598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.105 3.895 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.092 0.908 9 C 0.203 3.797 10 H 0.094 0.906 11 N -0.695 5.695 12 C 0.528 3.472 13 O -0.549 6.549 14 C -0.121 4.121 15 H 0.101 0.899 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.132 0.868 20 C 0.473 3.527 21 O -0.480 6.480 22 O -0.520 6.520 23 C 0.436 3.564 24 F -0.192 7.192 25 F -0.185 7.185 26 F -0.197 7.197 27 H 0.273 0.727 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.340 -0.089 10.325 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.105 4.105 3 Si 0.696 3.304 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.161 1.161 7 C -0.576 4.576 8 H 0.109 0.891 9 C 0.100 3.900 10 H 0.111 0.889 11 N -0.344 5.344 12 C 0.314 3.686 13 O -0.428 6.428 14 C -0.143 4.143 15 H 0.119 0.881 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.109 4.109 19 H 0.150 0.850 20 C 0.314 3.686 21 O -0.365 6.365 22 O -0.332 6.332 23 C 0.380 3.620 24 F -0.174 7.174 25 F -0.166 7.166 26 F -0.179 7.179 27 H 0.083 0.917 28 H 0.235 0.765 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 10.667 0.022 9.762 14.460 hybrid contribution -0.450 0.930 -0.077 1.036 sum 10.217 0.953 9.685 14.110 Atomic orbital electron populations 1.69895 1.06570 1.28234 1.44647 1.24957 0.94711 0.99408 0.91468 0.86840 0.82467 0.82826 0.78248 1.20288 1.20934 1.16116 1.20700 0.87694 0.96569 1.52641 0.89051 1.20073 0.98091 0.92432 0.79412 0.88873 1.47175 1.18258 1.57464 1.11505 1.19837 0.82222 0.78797 0.87765 1.90628 1.47052 1.42345 1.62819 1.22535 1.00032 0.97003 0.94682 0.88066 1.22735 0.93593 0.96817 1.02611 1.22967 0.92497 0.96889 1.03235 1.22418 0.98188 0.89301 1.00953 0.85019 1.23282 0.82191 0.84097 0.79044 1.90898 1.26980 1.85962 1.32680 1.84475 1.61533 1.16975 1.70257 1.21859 0.75577 0.84609 0.79947 1.93065 1.85445 1.47236 1.91646 1.93090 1.94189 1.94435 1.34920 1.93128 1.33481 1.96835 1.94445 0.91699 0.76534 0.89064 0.89825 0.90496 0.88038 0.73512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.96 55.43 0.77 -23.93 16 2 C 0.10 2.89 5.47 -17.82 -0.10 2.79 16 3 Si 0.87 21.67 26.98 -169.99 -4.59 17.09 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.24 -6.06 5.52 56.52 0.31 -5.75 16 7 C -0.54 -14.42 8.60 -34.44 -0.30 -14.71 16 8 H 0.09 2.61 7.81 -52.49 -0.41 2.20 16 9 C 0.20 4.91 1.79 -69.08 -0.12 4.79 16 10 H 0.09 2.42 4.33 -51.93 -0.22 2.20 16 11 N -0.69 -14.67 4.86 -54.93 -0.27 -14.94 16 12 C 0.53 10.33 4.11 -10.98 -0.05 10.29 16 13 O -0.55 -12.28 13.71 5.56 0.08 -12.21 16 14 C -0.12 -1.69 4.16 -90.96 -0.38 -2.07 16 15 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 16 C -0.12 -1.36 7.49 -25.92 -0.19 -1.55 16 17 C -0.12 -1.40 7.19 -25.83 -0.19 -1.58 16 18 C -0.09 -1.11 4.22 -90.87 -0.38 -1.50 16 19 H 0.13 1.18 8.14 -51.93 -0.42 0.75 16 20 C 0.47 7.48 7.21 36.01 0.26 7.74 16 21 O -0.48 -9.70 14.18 -19.15 -0.27 -9.97 16 22 O -0.52 -6.77 13.42 -39.27 -0.53 -7.29 16 23 C 0.44 10.05 2.82 37.16 0.10 10.16 16 24 F -0.19 -4.27 16.76 2.25 0.04 -4.24 16 25 F -0.18 -4.33 17.05 2.25 0.04 -4.30 16 26 F -0.20 -4.44 15.65 2.25 0.04 -4.40 16 27 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.40 7.77 8.57 -40.82 -0.35 7.42 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.50 7.03 -51.93 -0.37 1.13 16 33 H 0.41 4.03 9.10 45.56 0.41 4.44 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -33.15 295.12 -3.85 -37.00 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -2.27 Total: 8.39 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: -1.34 Total: 14.35 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.51 Total: -38.87 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.72 Total: -29.47 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 0.11 Total: -12.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.09 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.15 -3.85 -37.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.752 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds