Wall clock time and date at job start Tue Mar 31 2020 07:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00234 * 2 1 4 4 H 1.48503 * 109.47041 * 273.45337 * 3 2 1 5 5 H 1.48506 * 109.47127 * 33.45047 * 3 2 1 6 6 H 1.48497 * 109.47261 * 153.45179 * 3 2 1 7 7 C 1.37876 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00207 * 10.06165 * 7 2 1 9 9 C 1.50704 * 119.99835 * 190.04751 * 7 2 1 10 10 H 1.08998 * 109.47478 * 334.76823 * 9 7 2 11 11 N 1.46500 * 109.46667 * 94.76898 * 9 7 2 12 12 C 1.34779 * 120.00090 * 205.00201 * 11 9 7 13 13 O 1.21281 * 119.99627 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99987 * 180.02562 * 12 11 9 15 15 H 1.08996 * 112.85197 * 12.38108 * 14 12 11 16 16 C 1.53782 * 113.61376 * 143.57861 * 14 12 11 17 17 C 1.53786 * 87.07829 * 89.19756 * 16 14 12 18 18 C 1.53783 * 113.61110 * 241.18584 * 14 12 11 19 19 H 1.09000 * 113.61629 * 156.25195 * 18 14 12 20 20 C 1.50702 * 113.61352 * 25.34609 * 18 14 12 21 21 O 1.20821 * 120.00287 * 23.27648 * 20 18 14 22 22 O 1.34236 * 119.99622 * 203.27121 * 20 18 14 23 23 C 1.53000 * 109.47146 * 214.76671 * 9 7 2 24 24 F 1.39904 * 109.46981 * 301.01939 * 23 9 7 25 25 F 1.39895 * 109.47252 * 61.02285 * 23 9 7 26 26 F 1.39905 * 109.46975 * 181.02212 * 23 9 7 27 27 H 0.97003 * 119.99605 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00335 * 24.99842 * 11 9 7 29 29 H 1.09001 * 113.61478 * 203.74326 * 16 14 12 30 30 H 1.08999 * 113.61361 * 334.65046 * 16 14 12 31 31 H 1.09003 * 113.61243 * 139.98147 * 17 16 14 32 32 H 1.08996 * 113.61467 * 270.79409 * 17 16 14 33 33 H 0.96699 * 116.99197 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4237 2.0885 -1.3976 5 1 1.4850 2.6305 0.7718 6 1 3.5813 1.4201 0.6257 7 6 2.0045 -1.1941 -0.0005 8 1 1.4769 -2.1221 -0.1643 9 6 3.4942 -1.2042 0.2272 10 1 3.9134 -0.2423 -0.0678 11 7 3.7696 -1.4426 1.6462 12 6 4.9256 -1.0128 2.1898 13 8 5.7380 -0.4292 1.5040 14 6 5.2091 -1.2585 3.6493 15 1 4.5168 -1.9688 4.1013 16 6 6.6866 -1.5639 3.9469 17 6 6.8854 -0.0478 4.1108 18 6 5.3898 0.0311 4.4673 19 1 5.1873 -0.0944 5.5309 20 6 4.6887 1.2258 3.8736 21 8 3.7495 1.0673 3.1302 22 8 5.1076 2.4660 4.1708 23 6 4.1304 -2.3159 -0.6096 24 9 3.5756 -3.5480 -0.2472 25 9 3.8872 -2.0759 -1.9662 26 9 5.5104 -2.3404 -0.3804 27 1 -0.4850 0.8401 0.0004 28 1 3.1199 -1.9096 2.1946 29 1 6.8393 -2.1263 4.8681 30 1 7.2248 -1.9857 3.0981 31 1 7.5464 0.2193 4.9353 32 1 7.1404 0.4621 3.1818 33 1 4.6263 3.2006 3.7662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241221.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:57 Heat of formation + Delta-G solvation = -287.970901 kcal Electronic energy + Delta-G solvation = -25818.265004 eV Core-core repulsion = 21428.642707 eV Total energy + Delta-G solvation = -4389.622297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.89608 -48.40557 -48.38559 -42.16249 -40.35222 -38.32589 -37.02373 -36.36762 -34.47168 -31.24381 -28.40648 -27.34822 -26.86157 -23.55803 -23.01446 -22.09669 -20.74179 -19.63048 -19.36879 -19.07206 -18.63356 -18.49258 -18.20774 -17.35256 -16.91523 -16.69718 -15.66246 -15.62583 -15.49398 -15.24589 -15.20935 -14.91201 -14.84089 -14.59490 -14.56416 -14.53014 -14.04265 -13.73493 -13.65328 -13.08879 -13.04055 -12.64906 -12.48430 -12.39083 -11.96785 -11.92743 -11.82244 -11.43140 -11.25993 -10.97136 -10.62268 -9.99781 -8.58355 -6.73475 1.20564 1.26220 1.27583 1.46086 1.62831 1.99151 2.09983 2.19196 2.31008 2.92276 3.28221 3.30782 3.34737 3.48561 3.60340 3.78422 3.92880 4.25876 4.46383 4.49575 4.57997 4.74159 4.86091 4.98095 5.03778 5.09914 5.44849 5.56319 5.64597 5.85271 6.41247 6.80134 6.99034 7.00288 7.39628 8.53555 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.014853 B = 0.008803 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.674972 B = 3180.084749 C = 4416.654598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.068 3.932 3 Si 0.924 3.076 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.538 4.538 8 H 0.067 0.933 9 C 0.211 3.789 10 H 0.075 0.925 11 N -0.699 5.699 12 C 0.523 3.477 13 O -0.582 6.582 14 C -0.131 4.131 15 H 0.129 0.871 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.082 4.082 19 H 0.181 0.819 20 C 0.468 3.532 21 O -0.534 6.534 22 O -0.512 6.512 23 C 0.439 3.561 24 F -0.186 7.186 25 F -0.188 7.188 26 F -0.192 7.192 27 H 0.277 0.723 28 H 0.407 0.593 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 -0.261 12.797 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.173 1.173 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.106 3.894 10 H 0.093 0.907 11 N -0.348 5.348 12 C 0.311 3.689 13 O -0.463 6.463 14 C -0.153 4.153 15 H 0.147 0.853 16 C -0.142 4.142 17 C -0.154 4.154 18 C -0.101 4.101 19 H 0.198 0.802 20 C 0.311 3.689 21 O -0.423 6.423 22 O -0.325 6.325 23 C 0.383 3.617 24 F -0.168 7.168 25 F -0.170 7.170 26 F -0.173 7.173 27 H 0.087 0.913 28 H 0.244 0.756 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 12.353 -0.139 12.261 17.405 hybrid contribution -0.890 0.970 -0.829 1.556 sum 11.462 0.831 11.432 16.210 Atomic orbital electron populations 1.69952 1.07555 1.29041 1.46673 1.25470 0.95174 1.01672 0.91533 0.86037 0.80802 0.80215 0.78083 1.19872 1.20617 1.17299 1.20671 0.88913 0.95470 1.52495 0.91527 1.19722 0.96311 0.92107 0.81288 0.90695 1.46796 1.19589 1.58265 1.10198 1.20751 0.80753 0.77226 0.90166 1.90609 1.47841 1.43434 1.64371 1.22630 1.02898 0.99165 0.90581 0.85298 1.22829 0.90607 0.96854 1.03900 1.22920 0.92674 0.96992 1.02809 1.22733 0.97931 0.86622 1.02820 0.80161 1.24067 0.81394 0.85394 0.78026 1.90880 1.29502 1.86714 1.35204 1.84454 1.61285 1.16863 1.69876 1.21672 0.75770 0.84633 0.79623 1.93074 1.85397 1.46726 1.91576 1.93082 1.94237 1.94484 1.35185 1.93136 1.32986 1.96823 1.94402 0.91318 0.75629 0.84343 0.91817 0.86866 0.91788 0.72157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.42 13.96 21.45 0.30 -52.12 16 2 C 0.07 3.81 5.47 84.65 0.46 4.27 16 3 Si 0.92 45.82 26.98 68.60 1.85 47.67 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.25 -12.77 5.52 99.48 0.55 -12.22 16 7 C -0.54 -29.34 8.60 25.60 0.22 -29.12 16 8 H 0.07 3.92 7.81 -2.91 -0.02 3.89 16 9 C 0.21 10.29 1.79 44.25 0.08 10.37 16 10 H 0.08 3.96 4.33 -2.39 -0.01 3.95 16 11 N -0.70 -29.29 4.86 -446.09 -2.17 -31.46 16 12 C 0.52 19.93 4.11 87.66 0.36 20.29 16 13 O -0.58 -25.95 13.71 -3.03 -0.04 -25.99 16 14 C -0.13 -3.27 4.16 -11.01 -0.05 -3.32 16 15 H 0.13 2.48 8.11 -2.39 -0.02 2.46 16 16 C -0.10 -1.93 7.49 31.12 0.23 -1.70 16 17 C -0.12 -2.33 7.19 31.18 0.22 -2.10 16 18 C -0.08 -1.74 4.22 -10.95 -0.05 -1.78 16 19 H 0.18 2.10 8.14 -2.39 -0.02 2.08 16 20 C 0.47 13.91 7.21 71.24 0.51 14.42 16 21 O -0.53 -21.23 14.18 22.36 0.32 -20.91 16 22 O -0.51 -12.31 13.42 -51.47 -0.69 -13.00 16 23 C 0.44 20.26 2.82 71.98 0.20 20.46 16 24 F -0.19 -8.22 16.76 44.97 0.75 -7.47 16 25 F -0.19 -8.87 17.05 44.97 0.77 -8.10 16 26 F -0.19 -8.57 15.65 44.97 0.70 -7.86 16 27 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.41 15.68 8.57 -92.71 -0.79 14.89 16 29 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.79 7.03 -2.39 -0.02 1.78 16 33 H 0.42 7.75 9.10 -74.06 -0.67 7.08 16 Total: -1.00 -73.94 295.12 3.57 -70.37 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.42 Total: 17.07 kcal Atomic # 6 Polarization: 29.59 SS G_CDS: 2.20 Total: 31.79 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.87 Total: -83.58 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -0.42 Total: -59.90 kcal Atomic # 9 Polarization: -25.65 SS G_CDS: 2.22 Total: -23.43 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.85 Total: 47.67 kcal Total: -73.94 3.57 -70.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241221.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.599 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -291.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -287.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds