Wall clock time and date at job start Tue Mar 31 2020 07:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48499 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47352 * 300.00434 * 3 2 1 6 6 H 1.48501 * 109.46703 * 60.00704 * 3 2 1 7 7 C 1.37876 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 359.72210 * 7 2 1 10 10 H 1.08995 * 109.46562 * 300.27202 * 9 7 2 11 11 N 1.46496 * 109.46886 * 180.27419 * 9 7 2 12 12 C 1.34776 * 120.00074 * 154.99952 * 11 9 7 13 13 O 1.21286 * 119.99889 * 359.97438 * 12 11 9 14 14 C 1.50693 * 120.00438 * 179.97438 * 12 11 9 15 15 H 1.08998 * 112.85094 * 18.26079 * 14 12 11 16 16 C 1.53784 * 113.61697 * 149.45046 * 14 12 11 17 17 C 1.53778 * 87.08362 * 89.11871 * 16 14 12 18 18 C 1.53781 * 113.61689 * 247.05801 * 14 12 11 19 19 H 1.09004 * 113.61251 * 156.33527 * 18 14 12 20 20 C 1.50695 * 113.61332 * 25.43177 * 18 14 12 21 21 O 1.20825 * 119.99973 * 25.12122 * 20 18 14 22 22 O 1.34229 * 120.00091 * 205.11179 * 20 18 14 23 23 C 1.52992 * 109.47062 * 60.27508 * 9 7 2 24 24 F 1.39897 * 109.47694 * 60.00097 * 23 9 7 25 25 F 1.39901 * 109.47184 * 180.02562 * 23 9 7 26 26 F 1.39899 * 109.47286 * 299.99682 * 23 9 7 27 27 H 0.96994 * 120.00031 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00687 * 334.99881 * 11 9 7 29 29 H 1.09002 * 113.61626 * 203.66943 * 16 14 12 30 30 H 1.09003 * 113.61350 * 334.56703 * 16 14 12 31 31 H 1.08993 * 113.61911 * 139.97885 * 17 16 14 32 32 H 1.09007 * 113.61541 * 270.80406 * 17 16 14 33 33 H 0.96698 * 117.00192 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 0.0052 10 1 0.6246 -2.5529 0.8955 11 7 2.2031 -3.6126 0.0100 12 6 1.8371 -4.8100 0.5086 13 8 0.7197 -4.9657 0.9536 14 6 2.8162 -5.9556 0.5130 15 1 3.8494 -5.6298 0.3933 16 6 2.6111 -6.9368 1.6792 17 6 1.6404 -7.7003 0.7629 18 6 2.4208 -7.1076 -0.4258 19 1 3.2641 -7.7208 -0.7436 20 6 1.5429 -6.6775 -1.5726 21 8 1.5764 -5.5348 -1.9635 22 8 0.7238 -7.5640 -2.1600 23 6 0.3715 -2.5857 -1.2436 24 9 1.1756 -2.5166 -2.3862 25 9 -0.3285 -3.7970 -1.2380 26 9 -0.5377 -1.5224 -1.2482 27 1 -0.4850 0.8400 0.0004 28 1 3.0969 -3.4881 -0.3456 29 1 3.5062 -7.5034 1.9358 30 1 2.1296 -6.4879 2.5480 31 1 1.7246 -8.7840 0.8438 32 1 0.6104 -7.3497 0.8290 33 1 0.1797 -7.2414 -2.8913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574241222.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:00 Heat of formation + Delta-G solvation = -240.546866 kcal Electronic energy + Delta-G solvation = -26085.544196 eV Core-core repulsion = 21697.978360 eV Total energy + Delta-G solvation = -4387.565836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.12510 -45.75450 -45.44146 -40.91671 -38.96625 -36.94750 -35.77560 -34.45988 -32.48573 -28.78050 -27.36765 -26.03620 -24.43045 -22.15962 -21.72801 -20.42486 -19.10494 -17.91288 -17.26704 -16.79694 -16.71154 -16.46594 -16.07193 -15.63154 -15.47351 -14.78651 -14.51893 -14.18400 -13.60109 -13.53676 -12.79435 -12.70312 -12.67719 -12.32203 -12.15710 -12.11306 -11.94289 -11.81846 -11.67665 -11.45083 -11.24416 -11.12962 -10.86320 -10.82954 -10.65430 -10.51998 -10.30955 -10.05454 -9.56736 -9.07579 -8.67288 -8.10405 -6.18062 -4.41295 2.48662 3.06786 3.20360 3.26437 3.27544 3.31226 3.84727 4.24785 4.34901 4.56769 4.71600 4.82055 4.91556 5.01287 5.36104 5.44859 5.54859 5.61877 5.76656 5.93858 6.00071 6.01142 6.06175 6.35076 6.41010 6.76045 7.03998 7.29984 7.54878 7.69296 8.14214 8.44594 8.56081 8.98199 9.26148 10.73750 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.006160 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.239563 B = 4544.111954 C = 5051.214545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.246 3.754 10 H 0.081 0.919 11 N -0.692 5.692 12 C 0.531 3.469 13 O -0.542 6.542 14 C -0.119 4.119 15 H 0.101 0.899 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.090 4.090 19 H 0.132 0.868 20 C 0.474 3.526 21 O -0.479 6.479 22 O -0.520 6.520 23 C 0.424 3.576 24 F -0.205 7.205 25 F -0.214 7.214 26 F -0.144 7.144 27 H 0.266 0.734 28 H 0.397 0.603 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -13.158 -0.326 14.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.140 3.860 10 H 0.098 0.902 11 N -0.340 5.340 12 C 0.315 3.685 13 O -0.420 6.420 14 C -0.140 4.140 15 H 0.119 0.881 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.110 4.110 19 H 0.150 0.850 20 C 0.314 3.686 21 O -0.363 6.363 22 O -0.332 6.332 23 C 0.368 3.632 24 F -0.187 7.187 25 F -0.196 7.196 26 F -0.125 7.125 27 H 0.077 0.923 28 H 0.231 0.769 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 5.196 -12.918 0.184 13.925 hybrid contribution 0.364 1.168 -1.169 1.692 sum 5.560 -11.750 -0.984 13.036 Atomic orbital electron populations 1.70430 1.05840 1.27087 1.44034 1.25087 0.95140 1.00076 0.94156 0.86177 0.79814 0.82099 0.77827 1.19429 1.20607 1.20601 1.20929 0.93773 0.88246 1.55850 0.90531 1.19664 0.88757 0.85762 0.91793 0.90171 1.45853 1.16966 1.10432 1.60699 1.19622 0.87678 0.83368 0.77801 1.90670 1.21120 1.82771 1.47455 1.22470 1.00560 0.93734 0.97284 0.88114 1.22737 0.99753 0.96352 0.96919 1.22978 1.00441 0.99954 0.92232 1.22439 0.98559 0.99127 0.90841 0.85039 1.23207 0.78984 0.83618 0.82824 1.90890 1.64433 1.19474 1.61519 1.84458 1.53235 1.45456 1.50083 1.22814 0.80618 0.72630 0.87162 1.92988 1.74347 1.96151 1.55245 1.93049 1.81270 1.48341 1.96946 1.93379 1.68620 1.54202 1.96294 0.92300 0.76896 0.89100 0.89685 0.90482 0.88037 0.73412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.76 9.51 55.43 0.53 -23.23 16 2 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -14.56 8.46 -34.44 -0.29 -14.85 16 8 H 0.08 1.91 7.74 -52.49 -0.41 1.51 16 9 C 0.25 6.37 2.21 -69.09 -0.15 6.22 16 10 H 0.08 2.31 7.58 -51.93 -0.39 1.92 16 11 N -0.69 -14.85 4.55 -54.94 -0.25 -15.10 16 12 C 0.53 10.51 4.30 -10.99 -0.05 10.46 16 13 O -0.54 -12.56 13.80 5.55 0.08 -12.49 16 14 C -0.12 -1.64 4.15 -90.96 -0.38 -2.02 16 15 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.12 -1.35 7.45 -25.92 -0.19 -1.54 16 17 C -0.12 -1.40 7.21 -25.78 -0.19 -1.59 16 18 C -0.09 -1.11 4.22 -90.82 -0.38 -1.49 16 19 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.47 7.39 7.27 36.00 0.26 7.65 16 21 O -0.48 -9.43 13.79 -18.75 -0.26 -9.69 16 22 O -0.52 -6.77 13.41 -39.26 -0.53 -7.30 16 23 C 0.42 11.49 2.81 37.15 0.10 11.59 16 24 F -0.21 -5.50 16.94 2.25 0.04 -5.46 16 25 F -0.21 -5.74 14.21 2.25 0.03 -5.71 16 26 F -0.14 -4.18 12.93 2.25 0.03 -4.15 16 27 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.40 7.61 8.54 -40.82 -0.35 7.26 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.09 7.98 -51.93 -0.41 0.67 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.53 7.12 -51.92 -0.37 1.16 16 33 H 0.41 4.08 9.10 45.56 0.41 4.49 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -33.94 292.22 -4.65 -38.59 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.34 Total: 8.49 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: -1.36 Total: 16.06 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.28 Total: -38.33 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.71 Total: -29.47 kcal Atomic # 9 Polarization: -15.41 SS G_CDS: 0.10 Total: -15.31 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.94 -4.65 -38.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241222.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.954 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds