Wall clock time and date at job start Tue Mar 31 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48499 * 109.46959 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47352 * 300.00434 * 3 2 1 6 6 H 1.48501 * 109.46703 * 60.00704 * 3 2 1 7 7 C 1.37876 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00220 * 359.72210 * 7 2 1 10 10 H 1.08995 * 109.46562 * 300.27202 * 9 7 2 11 11 N 1.46496 * 109.46886 * 180.27419 * 9 7 2 12 12 C 1.34776 * 120.00074 * 154.99952 * 11 9 7 13 13 O 1.21286 * 119.99889 * 359.97438 * 12 11 9 14 14 C 1.50693 * 120.00438 * 179.97438 * 12 11 9 15 15 H 1.08998 * 112.85094 * 18.26079 * 14 12 11 16 16 C 1.53784 * 113.61697 * 149.45046 * 14 12 11 17 17 C 1.53778 * 87.08362 * 89.11871 * 16 14 12 18 18 C 1.53781 * 113.61689 * 247.05801 * 14 12 11 19 19 H 1.09004 * 113.61251 * 156.33527 * 18 14 12 20 20 C 1.50695 * 113.61332 * 25.43177 * 18 14 12 21 21 O 1.20825 * 119.99973 * 25.12122 * 20 18 14 22 22 O 1.34229 * 120.00091 * 205.11179 * 20 18 14 23 23 C 1.52992 * 109.47062 * 60.27508 * 9 7 2 24 24 F 1.39897 * 109.47694 * 60.00097 * 23 9 7 25 25 F 1.39901 * 109.47184 * 180.02562 * 23 9 7 26 26 F 1.39899 * 109.47286 * 299.99682 * 23 9 7 27 27 H 0.96994 * 120.00031 * 359.97438 * 1 2 3 28 28 H 0.96997 * 120.00687 * 334.99881 * 11 9 7 29 29 H 1.09002 * 113.61626 * 203.66943 * 16 14 12 30 30 H 1.09003 * 113.61350 * 334.56703 * 16 14 12 31 31 H 1.08993 * 113.61911 * 139.97885 * 17 16 14 32 32 H 1.09007 * 113.61541 * 270.80406 * 17 16 14 33 33 H 0.96698 * 117.00192 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 0.0052 10 1 0.6246 -2.5529 0.8955 11 7 2.2031 -3.6126 0.0100 12 6 1.8371 -4.8100 0.5086 13 8 0.7197 -4.9657 0.9536 14 6 2.8162 -5.9556 0.5130 15 1 3.8494 -5.6298 0.3933 16 6 2.6111 -6.9368 1.6792 17 6 1.6404 -7.7003 0.7629 18 6 2.4208 -7.1076 -0.4258 19 1 3.2641 -7.7208 -0.7436 20 6 1.5429 -6.6775 -1.5726 21 8 1.5764 -5.5348 -1.9635 22 8 0.7238 -7.5640 -2.1600 23 6 0.3715 -2.5857 -1.2436 24 9 1.1756 -2.5166 -2.3862 25 9 -0.3285 -3.7970 -1.2380 26 9 -0.5377 -1.5224 -1.2482 27 1 -0.4850 0.8400 0.0004 28 1 3.0969 -3.4881 -0.3456 29 1 3.5062 -7.5034 1.9358 30 1 2.1296 -6.4879 2.5480 31 1 1.7246 -8.7840 0.8438 32 1 0.6104 -7.3497 0.8290 33 1 0.1797 -7.2414 -2.8913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574241222.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:59 Heat of formation + Delta-G solvation = -265.995276 kcal Electronic energy + Delta-G solvation = -26086.647722 eV Core-core repulsion = 21697.978360 eV Total energy + Delta-G solvation = -4388.669362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.31879 -47.93238 -47.67810 -42.11816 -40.31647 -38.25840 -36.97207 -36.31025 -34.42876 -30.63833 -28.37112 -27.32845 -26.50072 -23.71539 -22.96611 -22.06151 -20.58970 -19.16222 -18.88376 -18.81161 -18.59511 -18.27922 -17.74078 -17.14626 -16.87886 -16.69366 -15.73439 -15.58520 -15.21688 -14.94216 -14.84287 -14.62654 -14.34210 -14.24458 -14.09478 -13.97693 -13.81361 -13.65072 -13.09164 -13.01603 -12.70918 -12.66430 -12.45657 -12.40043 -12.21130 -11.89831 -11.55418 -11.40806 -11.22429 -10.71300 -10.60555 -9.93833 -8.22515 -6.53501 1.30453 1.43273 1.44554 1.58010 1.67256 2.13199 2.29929 2.46077 2.63944 2.93822 3.31789 3.58383 3.69203 3.82584 3.88321 3.94812 4.23871 4.33299 4.48880 4.58273 4.75410 4.86285 4.93796 5.05369 5.12038 5.44715 5.49125 5.56656 5.65794 5.69971 6.51753 6.81043 7.03129 7.16050 7.44001 8.70837 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.024944 B = 0.006160 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.239563 B = 4544.111954 C = 5051.214545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.011 3.989 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.091 0.909 9 C 0.254 3.746 10 H 0.040 0.960 11 N -0.692 5.692 12 C 0.522 3.478 13 O -0.585 6.585 14 C -0.126 4.126 15 H 0.134 0.866 16 C -0.105 4.105 17 C -0.119 4.119 18 C -0.081 4.081 19 H 0.185 0.815 20 C 0.466 3.534 21 O -0.529 6.529 22 O -0.514 6.514 23 C 0.421 3.579 24 F -0.204 7.204 25 F -0.216 7.216 26 F -0.158 7.158 27 H 0.267 0.733 28 H 0.409 0.591 29 H 0.141 0.859 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.776 -14.542 -0.152 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.599 4.599 8 H 0.109 0.891 9 C 0.147 3.853 10 H 0.058 0.942 11 N -0.341 5.341 12 C 0.310 3.690 13 O -0.465 6.465 14 C -0.147 4.147 15 H 0.152 0.848 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.100 4.100 19 H 0.202 0.798 20 C 0.309 3.691 21 O -0.418 6.418 22 O -0.326 6.326 23 C 0.365 3.635 24 F -0.186 7.186 25 F -0.197 7.197 26 F -0.140 7.140 27 H 0.077 0.923 28 H 0.244 0.756 29 H 0.159 0.841 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 8.037 -14.356 0.356 16.457 hybrid contribution -0.609 1.509 -1.251 2.053 sum 7.429 -12.847 -0.895 14.867 Atomic orbital electron populations 1.70564 1.07597 1.28001 1.44994 1.26065 0.95937 1.03879 0.93468 0.85087 0.79150 0.77242 0.77683 1.17739 1.20756 1.20020 1.21285 0.94486 0.88539 1.55569 0.89129 1.19216 0.88973 0.87725 0.89433 0.94239 1.45778 1.16653 1.10209 1.61421 1.20755 0.88307 0.84000 0.75899 1.90646 1.23531 1.83424 1.48936 1.22568 1.00220 0.92065 0.99870 0.84761 1.22841 1.01242 0.95266 0.94888 1.22930 0.98287 1.02179 0.92268 1.22756 0.99460 0.98551 0.89196 0.79811 1.24033 0.78879 0.83109 0.83086 1.90874 1.66140 1.21489 1.63277 1.84440 1.52930 1.44867 1.50400 1.23064 0.80561 0.72143 0.87767 1.92973 1.74221 1.96138 1.55219 1.93037 1.81380 1.48350 1.96982 1.93346 1.69254 1.54979 1.96408 0.92269 0.75562 0.84066 0.91958 0.86790 0.92322 0.72192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.87 9.51 21.45 0.20 -50.67 16 2 C 0.01 0.61 5.20 84.65 0.44 1.05 16 3 Si 0.99 42.01 29.54 68.60 2.03 44.03 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.56 -29.92 8.46 25.60 0.22 -29.71 16 8 H 0.09 4.45 7.74 -2.91 -0.02 4.43 16 9 C 0.25 13.59 2.21 44.24 0.10 13.68 16 10 H 0.04 2.43 7.58 -2.39 -0.02 2.41 16 11 N -0.69 -29.97 4.55 -446.13 -2.03 -32.00 16 12 C 0.52 20.76 4.30 87.65 0.38 21.13 16 13 O -0.58 -28.15 13.80 -3.05 -0.04 -28.19 16 14 C -0.13 -3.14 4.15 -11.01 -0.05 -3.18 16 15 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 16 C -0.10 -1.99 7.45 31.12 0.23 -1.76 16 17 C -0.12 -2.48 7.21 31.21 0.22 -2.26 16 18 C -0.08 -1.70 4.22 -10.92 -0.05 -1.75 16 19 H 0.18 2.01 8.14 -2.38 -0.02 1.99 16 20 C 0.47 13.96 7.27 71.23 0.52 14.48 16 21 O -0.53 -20.85 13.79 21.97 0.30 -20.54 16 22 O -0.51 -12.78 13.41 -51.41 -0.69 -13.47 16 23 C 0.42 23.56 2.81 71.98 0.20 23.76 16 24 F -0.20 -11.10 16.94 44.97 0.76 -10.34 16 25 F -0.22 -12.03 14.21 44.97 0.64 -11.39 16 26 F -0.16 -9.57 12.93 44.97 0.58 -8.99 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.41 15.42 8.54 -92.71 -0.79 14.63 16 29 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.50 7.98 -2.39 -0.02 1.48 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.75 7.12 -2.38 -0.02 1.74 16 33 H 0.42 8.22 9.10 -74.06 -0.67 7.55 16 Total: -1.00 -77.86 292.22 3.70 -74.16 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.27 Total: 21.93 kcal Atomic # 6 Polarization: 33.24 SS G_CDS: 2.22 Total: 35.46 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.83 Total: -82.67 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -0.43 Total: -62.20 kcal Atomic # 9 Polarization: -32.70 SS G_CDS: 1.98 Total: -30.71 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.86 3.70 -74.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574241222.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.836 kcal (2) G-P(sol) polarization free energy of solvation -77.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -265.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds