Wall clock time and date at job start Tue Mar 31 2020 07:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.54737 * 2 1 4 4 C 1.53001 * 117.50076 * 214.32886 * 2 1 3 5 5 C 1.52995 * 117.49917 * 145.70562 * 2 1 3 6 6 C 1.50702 * 117.49854 * 0.02562 * 5 2 1 7 7 O 1.20823 * 120.00305 * 359.97438 * 6 5 2 8 8 O 1.34223 * 119.99977 * 180.02562 * 6 5 2 9 9 C 1.50703 * 117.49940 * 214.98140 * 5 2 1 10 10 O 1.21273 * 119.99752 * 359.97438 * 9 5 2 11 11 N 1.34771 * 119.99750 * 180.02562 * 9 5 2 12 12 C 1.46501 * 119.99802 * 179.97438 * 11 9 5 13 13 H 1.08997 * 109.47289 * 324.99663 * 12 11 9 14 14 C 1.50700 * 109.47160 * 204.99920 * 12 11 9 15 15 H 1.08001 * 120.00182 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99940 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99945 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99944 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46973 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47440 * 120.00062 * 18 16 14 21 21 H 1.48504 * 109.47008 * 240.00285 * 18 16 14 22 22 C 1.52998 * 109.47110 * 85.00183 * 12 11 9 23 23 F 1.39903 * 109.47283 * 59.99892 * 22 12 11 24 24 F 1.39899 * 109.47250 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47172 * 299.99807 * 22 12 11 26 26 H 1.09001 * 109.47002 * 154.27587 * 1 2 3 27 27 H 1.08993 * 109.46955 * 274.28024 * 1 2 3 28 28 H 1.09000 * 109.47050 * 34.27853 * 1 2 3 29 29 H 1.08998 * 117.49578 * 0.02562 * 4 2 1 30 30 H 1.08997 * 117.49524 * 144.99695 * 4 2 1 31 31 H 0.96702 * 117.00441 * 180.02562 * 8 6 5 32 32 H 0.97003 * 120.00450 * 359.97438 * 11 9 5 33 33 H 0.97008 * 119.99724 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1207 -0.7653 5 6 2.2365 -1.1212 0.7646 6 6 1.3721 -2.1413 1.4597 7 8 0.1684 -2.0544 1.4004 8 8 1.9393 -3.1461 2.1455 9 6 3.5293 -0.7815 1.4606 10 8 3.9720 0.3460 1.4010 11 7 4.1940 -1.7310 2.1484 12 6 5.4510 -1.4009 2.8245 13 1 6.0000 -0.6680 2.2334 14 6 6.2826 -2.6485 2.9760 15 1 5.9120 -3.5928 2.6052 16 6 7.5170 -2.5843 3.5868 17 7 7.9685 -1.4344 4.0378 18 14 8.5481 -4.1307 3.7739 19 1 7.8199 -5.2850 3.1887 20 1 9.8419 -3.9515 3.0676 21 1 8.8019 -4.3851 5.2148 22 6 5.1490 -0.8185 4.2067 23 9 4.4445 -1.7593 4.9655 24 9 6.3494 -0.5027 4.8521 25 9 4.3771 0.3398 4.0662 26 1 -0.3633 -0.9258 -0.4461 27 1 -0.3633 0.0767 1.0247 28 1 -0.3633 0.8492 -0.5788 29 1 1.6113 -1.8578 -1.2692 30 1 3.1714 -0.8746 -1.2688 31 1 1.3439 -3.7761 2.5742 32 1 3.8401 -2.6329 2.1958 33 1 8.8368 -1.3893 4.4679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574281146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:47 Heat of formation + Delta-G solvation = -236.269204 kcal Electronic energy + Delta-G solvation = -25552.081036 eV Core-core repulsion = 21164.700692 eV Total energy + Delta-G solvation = -4387.380343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.36578 -46.02063 -45.62928 -40.97393 -38.95943 -37.17534 -35.73772 -34.62450 -32.58823 -29.46399 -28.16736 -25.49339 -24.57147 -22.66506 -21.48330 -20.51043 -19.73737 -18.69499 -17.49953 -16.84102 -16.75900 -16.57165 -16.02069 -15.64955 -15.15028 -15.05728 -14.71416 -14.11913 -13.82070 -13.35454 -13.08972 -12.93019 -12.76525 -12.64423 -12.45745 -12.40116 -12.25432 -11.97026 -11.82198 -11.64457 -11.59231 -11.22030 -10.92283 -10.86147 -10.71456 -10.45595 -10.39670 -10.06827 -9.66900 -9.34346 -8.75337 -8.29987 -6.26007 -4.49660 1.94823 2.69908 3.03964 3.16517 3.23845 3.27301 3.57852 3.70811 4.18345 4.45526 4.53259 4.64437 4.90781 4.96958 5.04088 5.28930 5.55409 5.65203 5.77581 5.81522 5.85216 5.87255 6.04788 6.20918 6.29592 6.50528 6.88385 7.14319 7.45494 7.60762 7.82143 8.30132 8.47610 8.82105 9.18095 10.65831 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.005696 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.798635 B = 4914.962392 C = 5214.954449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 H 0.132 0.868 4 C -0.120 4.120 5 C -0.179 4.179 6 C 0.524 3.476 7 O -0.506 6.506 8 O -0.506 6.506 9 C 0.544 3.456 10 O -0.528 6.528 11 N -0.696 5.696 12 C 0.243 3.757 13 H 0.086 0.914 14 C -0.550 4.550 15 H 0.079 0.921 16 C 0.064 3.936 17 N -0.840 5.840 18 Si 0.916 3.084 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.417 3.583 23 F -0.208 7.208 24 F -0.136 7.136 25 F -0.218 7.218 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.415 0.585 32 H 0.408 0.592 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 -2.325 -6.398 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 H 0.150 0.850 4 C -0.158 4.158 5 C -0.183 4.183 6 C 0.366 3.634 7 O -0.394 6.394 8 O -0.319 6.319 9 C 0.327 3.673 10 O -0.405 6.405 11 N -0.349 5.349 12 C 0.138 3.862 13 H 0.103 0.897 14 C -0.587 4.587 15 H 0.097 0.903 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.206 1.206 22 C 0.360 3.640 23 F -0.190 7.190 24 F -0.117 7.117 25 F -0.200 7.200 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.276 0.724 32 H 0.248 0.752 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.796 -1.134 -6.487 11.803 hybrid contribution 0.030 -1.578 0.998 1.867 sum -9.766 -2.712 -5.489 11.526 Atomic orbital electron populations 1.21473 0.90976 1.01841 1.02955 1.22629 0.96200 0.94476 0.96909 0.84981 1.23285 1.03996 1.01475 0.87011 1.21291 0.98237 1.01867 0.96945 1.21835 0.86477 0.79640 0.75401 1.90707 1.15651 1.73926 1.59101 1.84367 1.45664 1.38387 1.63490 1.18928 0.83502 0.85488 0.79345 1.90712 1.67753 1.20469 1.61577 1.46223 1.24396 1.13508 1.50766 1.19788 0.81681 0.99719 0.85035 0.89682 1.20912 1.01866 0.93174 1.42744 0.90300 1.25092 0.97720 0.97456 0.94169 1.70412 1.18274 1.24053 1.34591 0.86146 0.79680 0.81838 0.78095 1.19361 1.20545 1.20561 1.23133 0.74223 0.74563 0.92043 1.92990 1.80220 1.66347 1.79459 1.93407 1.42059 1.92744 1.83510 1.93069 1.77506 1.53211 1.96251 0.91723 0.91162 0.92213 0.87177 0.86444 0.72403 0.75247 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 8.43 37.16 0.31 -1.02 16 2 C -0.08 -1.09 5.92 -90.62 -0.54 -1.63 16 3 H 0.13 1.80 7.67 -51.93 -0.40 1.40 16 4 C -0.12 -1.41 9.58 -26.73 -0.26 -1.66 16 5 C -0.18 -2.72 2.57 -156.81 -0.40 -3.12 16 6 C 0.52 7.48 7.84 36.01 0.28 7.77 16 7 O -0.51 -7.53 13.87 -18.75 -0.26 -7.79 16 8 O -0.51 -6.27 10.51 -39.24 -0.41 -6.69 16 9 C 0.54 10.79 6.92 -10.99 -0.08 10.71 16 10 O -0.53 -12.10 14.83 5.56 0.08 -12.01 16 11 N -0.70 -14.51 4.80 -54.94 -0.26 -14.78 16 12 C 0.24 6.04 2.21 -69.08 -0.15 5.89 16 13 H 0.09 2.33 7.58 -51.93 -0.39 1.94 16 14 C -0.55 -13.95 8.46 -34.44 -0.29 -14.24 16 15 H 0.08 1.90 7.74 -52.49 -0.41 1.49 16 16 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 17 N -0.84 -22.84 9.50 55.43 0.53 -22.32 16 18 Si 0.92 19.86 29.54 -169.99 -5.02 14.84 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 22 C 0.42 10.75 2.81 37.16 0.10 10.85 16 23 F -0.21 -5.17 16.94 2.25 0.04 -5.14 16 24 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 25 F -0.22 -5.60 15.68 2.25 0.04 -5.57 16 26 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 27 H 0.07 0.92 7.26 -51.93 -0.38 0.54 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.11 1.05 8.05 -51.93 -0.42 0.63 16 30 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.42 3.07 9.10 45.56 0.41 3.48 16 32 H 0.41 7.69 5.70 -40.82 -0.23 7.46 16 33 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 294.55 15.07 4.44 4.44 Total: -1.00 -31.25 294.55 -4.07 -35.32 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.16 Total: 8.31 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: -1.11 Total: 15.12 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.26 Total: -37.09 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.59 Total: -26.49 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 0.10 Total: -14.44 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.25 -4.07 -35.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574281146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.949 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds