Wall clock time and date at job start Tue Mar 31 2020 07:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 115.54737 * 2 1 4 4 C 1.53001 * 117.50076 * 214.32886 * 2 1 3 5 5 C 1.52995 * 117.49917 * 145.70562 * 2 1 3 6 6 C 1.50702 * 117.49854 * 0.02562 * 5 2 1 7 7 O 1.20823 * 120.00305 * 359.97438 * 6 5 2 8 8 O 1.34223 * 119.99977 * 180.02562 * 6 5 2 9 9 C 1.50703 * 117.49940 * 214.98140 * 5 2 1 10 10 O 1.21273 * 119.99752 * 359.97438 * 9 5 2 11 11 N 1.34771 * 119.99750 * 180.02562 * 9 5 2 12 12 C 1.46501 * 119.99802 * 179.97438 * 11 9 5 13 13 H 1.08997 * 109.47289 * 324.99663 * 12 11 9 14 14 C 1.50700 * 109.47160 * 204.99920 * 12 11 9 15 15 H 1.08001 * 120.00182 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99940 * 179.97438 * 14 12 11 17 17 N 1.31512 * 119.99945 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99944 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46973 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47440 * 120.00062 * 18 16 14 21 21 H 1.48504 * 109.47008 * 240.00285 * 18 16 14 22 22 C 1.52998 * 109.47110 * 85.00183 * 12 11 9 23 23 F 1.39903 * 109.47283 * 59.99892 * 22 12 11 24 24 F 1.39899 * 109.47250 * 180.02562 * 22 12 11 25 25 F 1.39902 * 109.47172 * 299.99807 * 22 12 11 26 26 H 1.09001 * 109.47002 * 154.27587 * 1 2 3 27 27 H 1.08993 * 109.46955 * 274.28024 * 1 2 3 28 28 H 1.09000 * 109.47050 * 34.27853 * 1 2 3 29 29 H 1.08998 * 117.49578 * 0.02562 * 4 2 1 30 30 H 1.08997 * 117.49524 * 144.99695 * 4 2 1 31 31 H 0.96702 * 117.00441 * 180.02562 * 8 6 5 32 32 H 0.97003 * 120.00450 * 359.97438 * 11 9 5 33 33 H 0.97008 * 119.99724 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2366 -1.1207 -0.7653 5 6 2.2365 -1.1212 0.7646 6 6 1.3721 -2.1413 1.4597 7 8 0.1684 -2.0544 1.4004 8 8 1.9393 -3.1461 2.1455 9 6 3.5293 -0.7815 1.4606 10 8 3.9720 0.3460 1.4010 11 7 4.1940 -1.7310 2.1484 12 6 5.4510 -1.4009 2.8245 13 1 6.0000 -0.6680 2.2334 14 6 6.2826 -2.6485 2.9760 15 1 5.9120 -3.5928 2.6052 16 6 7.5170 -2.5843 3.5868 17 7 7.9685 -1.4344 4.0378 18 14 8.5481 -4.1307 3.7739 19 1 7.8199 -5.2850 3.1887 20 1 9.8419 -3.9515 3.0676 21 1 8.8019 -4.3851 5.2148 22 6 5.1490 -0.8185 4.2067 23 9 4.4445 -1.7593 4.9655 24 9 6.3494 -0.5027 4.8521 25 9 4.3771 0.3398 4.0662 26 1 -0.3633 -0.9258 -0.4461 27 1 -0.3633 0.0767 1.0247 28 1 -0.3633 0.8492 -0.5788 29 1 1.6113 -1.8578 -1.2692 30 1 3.1714 -0.8746 -1.2688 31 1 1.3439 -3.7761 2.5742 32 1 3.8401 -2.6329 2.1958 33 1 8.8368 -1.3893 4.4679 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574281146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:46 Heat of formation + Delta-G solvation = -257.827010 kcal Electronic energy + Delta-G solvation = -25553.015852 eV Core-core repulsion = 21164.700692 eV Total energy + Delta-G solvation = -4388.315160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.44980 -48.08842 -47.75377 -42.14399 -40.37726 -38.33792 -36.85385 -36.42024 -34.46627 -30.94664 -29.54849 -26.76876 -26.46862 -24.18144 -22.92402 -21.91753 -21.03053 -20.05646 -19.09043 -18.85207 -18.70551 -18.22667 -17.71387 -16.91655 -16.85650 -16.47073 -16.15333 -15.57379 -15.25177 -15.02980 -14.78155 -14.57690 -14.50138 -14.33546 -14.15833 -14.04076 -13.92985 -13.71754 -13.54222 -13.10178 -12.77116 -12.67656 -12.65180 -12.54833 -12.20750 -11.84855 -11.56577 -11.51536 -11.10749 -10.89454 -10.70460 -10.10486 -8.22141 -6.52956 0.84679 1.39456 1.47002 1.48626 1.61143 1.85990 2.10371 2.38066 2.47161 2.57268 2.93201 3.34355 3.47237 3.65285 3.76669 3.86331 4.07430 4.17542 4.33736 4.55829 4.68184 4.87018 4.88093 4.96753 5.12759 5.36018 5.37720 5.53379 5.58192 5.63730 6.52094 6.64788 6.87294 7.15680 7.29610 8.71040 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.005696 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.798635 B = 4914.962392 C = 5214.954449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 H 0.122 0.878 4 C -0.093 4.093 5 C -0.202 4.202 6 C 0.530 3.470 7 O -0.513 6.513 8 O -0.510 6.510 9 C 0.540 3.460 10 O -0.566 6.566 11 N -0.693 5.693 12 C 0.249 3.751 13 H 0.051 0.949 14 C -0.559 4.559 15 H 0.092 0.908 16 C 0.015 3.985 17 N -0.875 5.875 18 Si 0.984 3.016 19 H -0.254 1.254 20 H -0.276 1.276 21 H -0.282 1.282 22 C 0.412 3.588 23 F -0.202 7.202 24 F -0.149 7.149 25 F -0.221 7.221 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.121 0.879 31 H 0.437 0.563 32 H 0.418 0.582 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 -4.115 -7.464 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 H 0.140 0.860 4 C -0.130 4.130 5 C -0.206 4.206 6 C 0.373 3.627 7 O -0.402 6.402 8 O -0.326 6.326 9 C 0.326 3.674 10 O -0.446 6.446 11 N -0.347 5.347 12 C 0.142 3.858 13 H 0.069 0.931 14 C -0.596 4.596 15 H 0.110 0.890 16 C -0.190 4.190 17 N -0.509 5.509 18 Si 0.808 3.192 19 H -0.178 1.178 20 H -0.202 1.202 21 H -0.207 1.207 22 C 0.356 3.644 23 F -0.184 7.184 24 F -0.130 7.130 25 F -0.203 7.203 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.139 0.861 31 H 0.301 0.699 32 H 0.260 0.740 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.799 -2.962 -7.559 13.510 hybrid contribution 0.302 -0.972 1.340 1.682 sum -10.498 -3.933 -6.219 12.820 Atomic orbital electron populations 1.21433 0.89547 1.03199 1.02295 1.22747 0.97144 0.93944 0.96317 0.86045 1.23506 1.04259 1.00831 0.84359 1.21227 0.96368 1.04151 0.98880 1.21549 0.86086 0.79727 0.75383 1.90710 1.15685 1.74304 1.59504 1.84289 1.46475 1.38499 1.63297 1.19641 0.84553 0.84598 0.78558 1.90686 1.69170 1.21951 1.62763 1.46127 1.23365 1.14398 1.50781 1.19415 0.83273 0.98838 0.84246 0.93127 1.21228 1.02139 0.93592 1.42630 0.89033 1.26007 0.98891 1.00446 0.93656 1.70534 1.18736 1.26233 1.35398 0.85096 0.77986 0.78353 0.77806 1.17795 1.20194 1.20734 1.23345 0.73837 0.74615 0.92584 1.92986 1.80016 1.66056 1.79376 1.93380 1.42931 1.92882 1.83842 1.93058 1.77487 1.53444 1.96277 0.91115 0.92923 0.89924 0.84114 0.86054 0.69877 0.74030 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 8.43 71.98 0.61 -1.64 16 2 C -0.08 -2.03 5.92 -10.79 -0.06 -2.09 16 3 H 0.12 3.24 7.67 -2.39 -0.02 3.22 16 4 C -0.09 -1.93 9.58 30.59 0.29 -1.64 16 5 C -0.20 -5.87 2.57 -53.67 -0.14 -6.01 16 6 C 0.53 14.12 7.84 71.24 0.56 14.68 16 7 O -0.51 -14.18 13.87 21.97 0.30 -13.87 16 8 O -0.51 -11.59 10.51 -51.34 -0.54 -12.13 16 9 C 0.54 21.44 6.92 87.66 0.61 22.05 16 10 O -0.57 -26.55 14.83 -3.01 -0.04 -26.60 16 11 N -0.69 -28.79 4.80 -446.11 -2.14 -30.93 16 12 C 0.25 12.57 2.21 44.24 0.10 12.67 16 13 H 0.05 2.90 7.58 -2.39 -0.02 2.88 16 14 C -0.56 -28.17 8.46 25.60 0.22 -27.95 16 15 H 0.09 4.28 7.74 -2.91 -0.02 4.25 16 16 C 0.02 0.78 5.20 84.66 0.44 1.22 16 17 N -0.87 -48.20 9.50 21.45 0.20 -47.99 16 18 Si 0.98 40.02 29.54 68.60 2.03 42.04 16 19 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 21 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 22 C 0.41 21.61 2.81 71.98 0.20 21.81 16 23 F -0.20 -10.04 16.94 44.97 0.76 -9.27 16 24 F -0.15 -8.44 12.91 44.97 0.58 -7.86 16 25 F -0.22 -11.57 15.68 44.97 0.71 -10.86 16 26 H 0.07 1.39 7.02 -2.39 -0.02 1.37 16 27 H 0.05 1.29 7.26 -2.39 -0.02 1.28 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.14 2.11 8.05 -2.39 -0.02 2.09 16 30 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.44 5.40 9.10 -74.06 -0.67 4.72 16 32 H 0.42 15.34 5.70 -92.71 -0.53 14.81 16 33 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -67.46 294.55 4.67 -62.79 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.00 Total: 21.59 kcal Atomic # 6 Polarization: 30.29 SS G_CDS: 2.82 Total: 33.11 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -1.94 Total: -78.93 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -0.28 Total: -52.60 kcal Atomic # 9 Polarization: -30.05 SS G_CDS: 2.05 Total: -28.00 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.04 kcal Total: -67.46 4.67 -62.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574281146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.041 kcal (2) G-P(sol) polarization free energy of solvation -67.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds