Wall clock time and date at job start Tue Mar 31 2020 07:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99989 * 2 1 4 4 H 1.48498 * 109.47123 * 264.80688 * 3 2 1 5 5 H 1.48500 * 109.46887 * 144.80772 * 3 2 1 6 6 H 1.48496 * 109.47164 * 24.81086 * 3 2 1 7 7 C 1.37878 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 4.88506 * 7 2 1 9 9 C 1.50697 * 120.00119 * 184.87970 * 7 2 1 10 10 H 1.08998 * 109.47187 * 334.94552 * 9 7 2 11 11 N 1.46503 * 109.47067 * 94.94174 * 9 7 2 12 12 C 1.34782 * 120.00001 * 204.99787 * 11 9 7 13 13 O 1.21280 * 119.99955 * 0.02562 * 12 11 9 14 14 C 1.50694 * 119.99671 * 180.02562 * 12 11 9 15 15 H 1.08997 * 112.85174 * 51.69622 * 14 12 11 16 16 C 1.53778 * 113.61779 * 280.49393 * 14 12 11 17 17 C 1.53771 * 87.08501 * 220.02398 * 16 14 12 18 18 C 1.53782 * 87.08413 * 25.43150 * 17 16 14 19 19 H 1.09001 * 113.61207 * 89.11532 * 18 17 16 20 20 C 1.50695 * 113.61745 * 220.01823 * 18 17 16 21 21 O 1.20825 * 119.99771 * 97.49887 * 20 18 17 22 22 O 1.34227 * 120.00191 * 277.49892 * 20 18 17 23 23 C 1.53001 * 109.47386 * 214.94453 * 9 7 2 24 24 F 1.39905 * 109.47015 * 54.93435 * 23 9 7 25 25 F 1.39896 * 109.47189 * 174.93533 * 23 9 7 26 26 F 1.39901 * 109.46999 * 294.93818 * 23 9 7 27 27 H 0.97000 * 119.99692 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99727 * 25.00792 * 11 9 7 29 29 H 1.09002 * 113.61369 * 334.57407 * 16 14 12 30 30 H 1.09004 * 113.61532 * 105.38800 * 16 14 12 31 31 H 1.08998 * 113.61984 * 139.98148 * 17 16 14 32 32 H 1.09003 * 113.61521 * 270.88433 * 17 16 14 33 33 H 0.96702 * 117.00021 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9831 -1.3943 5 1 3.4875 1.4743 0.8069 6 1 1.3961 2.6819 0.5875 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0787 9 6 3.5074 -1.1964 0.1115 10 1 3.9004 -0.2485 -0.2561 11 7 3.8932 -1.3740 1.5137 12 6 5.0873 -0.9228 1.9464 13 8 5.8422 -0.3695 1.1751 14 6 5.4843 -1.1060 3.3885 15 1 5.3807 -2.1364 3.7284 16 6 4.8484 -0.0771 4.3380 17 6 6.2026 -0.0276 5.0647 18 6 6.8415 -0.4734 3.7389 19 1 7.1182 0.3554 3.0871 20 6 7.9502 -1.4795 3.9111 21 8 7.7233 -2.6581 3.7723 22 8 9.1896 -1.0663 4.2189 23 6 4.0788 -2.3438 -0.7239 24 9 3.6156 -2.2381 -2.0398 25 9 5.4761 -2.2766 -0.7145 26 9 3.6669 -3.5658 -0.1813 27 1 -0.4850 0.8401 -0.0004 28 1 3.2893 -1.8163 2.1305 29 1 4.5801 0.8599 3.8501 30 1 4.0401 -0.4846 4.9454 31 1 6.4953 0.9755 5.3749 32 1 6.2966 -0.7631 5.8637 33 1 9.8677 -1.7485 4.3188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:02 Heat of formation + Delta-G solvation = -272.876774 kcal Electronic energy + Delta-G solvation = -25034.503839 eV Core-core repulsion = 20645.536072 eV Total energy + Delta-G solvation = -4388.967766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.04791 -46.57000 -46.53097 -40.94012 -39.30225 -37.32820 -36.05569 -34.77165 -32.59373 -29.58623 -27.43356 -26.42258 -24.96031 -22.28502 -21.67623 -20.33141 -19.33282 -18.47638 -17.99142 -17.53385 -17.27674 -16.92230 -16.55054 -16.29167 -15.57029 -15.36086 -14.48311 -14.31428 -13.98800 -13.56567 -13.44402 -13.13792 -13.00312 -12.87030 -12.74409 -12.71767 -12.67458 -12.54308 -12.29113 -11.85491 -11.62016 -11.54097 -11.23063 -11.07842 -10.72575 -10.68143 -10.39573 -10.18454 -9.84311 -9.35094 -8.98578 -8.44359 -6.56033 -4.70807 2.15012 2.94485 3.04338 3.07639 3.17024 3.24080 3.67546 3.93063 4.06379 4.20164 4.35804 4.59434 4.73524 4.87254 5.11460 5.17853 5.28531 5.32728 5.50108 5.51233 5.59971 5.66887 5.76691 5.83194 6.20504 6.28545 6.42194 6.86850 7.11491 7.82292 7.84437 8.27765 8.49708 8.79314 8.99834 10.52525 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.006258 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.583180 B = 4472.881233 C = 5406.194203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.100 3.900 3 Si 0.868 3.132 4 H -0.266 1.266 5 H -0.254 1.254 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.203 3.797 10 H 0.089 0.911 11 N -0.707 5.707 12 C 0.511 3.489 13 O -0.545 6.545 14 C -0.119 4.119 15 H 0.126 0.874 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.138 0.862 20 C 0.491 3.509 21 O -0.513 6.513 22 O -0.516 6.516 23 C 0.437 3.563 24 F -0.182 7.182 25 F -0.196 7.196 26 F -0.192 7.192 27 H 0.275 0.725 28 H 0.402 0.598 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.522 0.600 10.103 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.110 4.110 3 Si 0.692 3.308 4 H -0.191 1.191 5 H -0.178 1.178 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.112 0.888 9 C 0.099 3.901 10 H 0.107 0.893 11 N -0.358 5.358 12 C 0.296 3.704 13 O -0.424 6.424 14 C -0.140 4.140 15 H 0.144 0.856 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.109 4.109 19 H 0.156 0.844 20 C 0.334 3.666 21 O -0.400 6.400 22 O -0.327 6.327 23 C 0.381 3.619 24 F -0.163 7.163 25 F -0.177 7.177 26 F -0.174 7.174 27 H 0.086 0.914 28 H 0.238 0.762 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 10.497 1.054 9.431 14.150 hybrid contribution 0.673 -0.158 0.056 0.694 sum 11.170 0.896 9.486 14.682 Atomic orbital electron populations 1.69857 1.06397 1.28377 1.44564 1.24991 0.94802 0.99228 0.91972 0.86944 0.80763 0.82868 0.80185 1.19076 1.17812 1.20490 1.20726 0.86248 0.96437 1.54006 0.88848 1.20012 0.97816 0.92148 0.80084 0.89299 1.47354 1.17450 1.58881 1.12104 1.20468 0.82159 0.78606 0.89125 1.90656 1.51669 1.43272 1.56759 1.22830 0.94577 1.02324 0.94314 0.85578 1.22818 0.97013 0.99328 0.96875 1.22840 0.95511 1.02728 0.94600 1.22439 0.89386 0.98094 1.00940 0.84438 1.23339 0.82684 0.89081 0.71528 1.90718 1.83225 1.19367 1.46700 1.84554 1.20361 1.45501 1.82315 1.21730 0.74940 0.85282 0.79940 1.93107 1.88716 1.96195 1.38325 1.93146 1.31520 1.96534 1.96537 1.93070 1.90263 1.48128 1.85891 0.91438 0.76174 0.88838 0.89365 0.89570 0.89307 0.73523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.26 13.96 55.43 0.77 -22.49 16 2 C 0.10 2.57 5.47 -17.82 -0.10 2.48 16 3 Si 0.87 19.68 26.99 -169.99 -4.59 15.09 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.25 -5.74 6.82 56.52 0.39 -5.36 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.58 8.52 -34.44 -0.29 -13.87 16 8 H 0.09 2.56 8.00 -52.49 -0.42 2.14 16 9 C 0.20 4.68 1.71 -69.08 -0.12 4.56 16 10 H 0.09 2.17 4.73 -51.93 -0.25 1.92 16 11 N -0.71 -14.12 4.91 -54.93 -0.27 -14.39 16 12 C 0.51 9.79 7.00 -10.99 -0.08 9.71 16 13 O -0.55 -12.16 14.49 5.56 0.08 -12.08 16 14 C -0.12 -1.71 3.47 -90.96 -0.32 -2.03 16 15 H 0.13 1.74 7.44 -51.93 -0.39 1.36 16 16 C -0.12 -1.37 7.63 -25.93 -0.20 -1.57 16 17 C -0.12 -1.14 7.63 -25.92 -0.20 -1.34 16 18 C -0.09 -1.16 3.56 -90.96 -0.32 -1.48 16 19 H 0.14 1.89 7.47 -51.93 -0.39 1.50 16 20 C 0.49 6.62 7.85 36.00 0.28 6.90 16 21 O -0.51 -8.43 16.66 -18.75 -0.31 -8.74 16 22 O -0.52 -5.35 13.42 -39.25 -0.53 -5.88 16 23 C 0.44 9.98 2.83 37.16 0.11 10.09 16 24 F -0.18 -4.21 16.89 2.25 0.04 -4.18 16 25 F -0.20 -4.50 15.83 2.25 0.04 -4.47 16 26 F -0.19 -4.25 16.93 2.25 0.04 -4.21 16 27 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.40 7.17 8.59 -40.82 -0.35 6.82 16 29 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.41 2.44 9.10 45.56 0.41 2.85 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -31.60 302.93 -3.61 -35.21 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -2.21 Total: 8.11 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: -1.23 Total: 13.45 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.50 Total: -36.88 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.76 Total: -26.70 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 0.11 Total: -12.85 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.59 Total: 15.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.60 -3.61 -35.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -237.664 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -269.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds