Wall clock time and date at job start Tue Mar 31 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99989 * 2 1 4 4 H 1.48498 * 109.47123 * 264.80688 * 3 2 1 5 5 H 1.48500 * 109.46887 * 144.80772 * 3 2 1 6 6 H 1.48496 * 109.47164 * 24.81086 * 3 2 1 7 7 C 1.37878 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 4.88506 * 7 2 1 9 9 C 1.50697 * 120.00119 * 184.87970 * 7 2 1 10 10 H 1.08998 * 109.47187 * 334.94552 * 9 7 2 11 11 N 1.46503 * 109.47067 * 94.94174 * 9 7 2 12 12 C 1.34782 * 120.00001 * 204.99787 * 11 9 7 13 13 O 1.21280 * 119.99955 * 0.02562 * 12 11 9 14 14 C 1.50694 * 119.99671 * 180.02562 * 12 11 9 15 15 H 1.08997 * 112.85174 * 51.69622 * 14 12 11 16 16 C 1.53778 * 113.61779 * 280.49393 * 14 12 11 17 17 C 1.53771 * 87.08501 * 220.02398 * 16 14 12 18 18 C 1.53782 * 87.08413 * 25.43150 * 17 16 14 19 19 H 1.09001 * 113.61207 * 89.11532 * 18 17 16 20 20 C 1.50695 * 113.61745 * 220.01823 * 18 17 16 21 21 O 1.20825 * 119.99771 * 97.49887 * 20 18 17 22 22 O 1.34227 * 120.00191 * 277.49892 * 20 18 17 23 23 C 1.53001 * 109.47386 * 214.94453 * 9 7 2 24 24 F 1.39905 * 109.47015 * 54.93435 * 23 9 7 25 25 F 1.39896 * 109.47189 * 174.93533 * 23 9 7 26 26 F 1.39901 * 109.46999 * 294.93818 * 23 9 7 27 27 H 0.97000 * 119.99692 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99727 * 25.00792 * 11 9 7 29 29 H 1.09002 * 113.61369 * 334.57407 * 16 14 12 30 30 H 1.09004 * 113.61532 * 105.38800 * 16 14 12 31 31 H 1.08998 * 113.61984 * 139.98148 * 17 16 14 32 32 H 1.09003 * 113.61521 * 270.88433 * 17 16 14 33 33 H 0.96702 * 117.00021 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9831 -1.3943 5 1 3.4875 1.4743 0.8069 6 1 1.3961 2.6819 0.5875 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0787 9 6 3.5074 -1.1964 0.1115 10 1 3.9004 -0.2485 -0.2561 11 7 3.8932 -1.3740 1.5137 12 6 5.0873 -0.9228 1.9464 13 8 5.8422 -0.3695 1.1751 14 6 5.4843 -1.1060 3.3885 15 1 5.3807 -2.1364 3.7284 16 6 4.8484 -0.0771 4.3380 17 6 6.2026 -0.0276 5.0647 18 6 6.8415 -0.4734 3.7389 19 1 7.1182 0.3554 3.0871 20 6 7.9502 -1.4795 3.9111 21 8 7.7233 -2.6581 3.7723 22 8 9.1896 -1.0663 4.2189 23 6 4.0788 -2.3438 -0.7239 24 9 3.6156 -2.2381 -2.0398 25 9 5.4761 -2.2766 -0.7145 26 9 3.6669 -3.5658 -0.1813 27 1 -0.4850 0.8401 -0.0004 28 1 3.2893 -1.8163 2.1305 29 1 4.5801 0.8599 3.8501 30 1 4.0401 -0.4846 4.9454 31 1 6.4953 0.9755 5.3749 32 1 6.2966 -0.7631 5.8637 33 1 9.8677 -1.7485 4.3188 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:01 Heat of formation + Delta-G solvation = -295.832949 kcal Electronic energy + Delta-G solvation = -25035.499293 eV Core-core repulsion = 20645.536072 eV Total energy + Delta-G solvation = -4389.963221 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.91605 -48.43248 -48.40330 -42.03142 -40.60435 -38.51785 -37.04650 -36.54406 -34.50001 -31.32285 -28.42473 -27.60560 -26.89358 -23.40909 -23.16221 -21.85383 -20.58699 -19.95773 -19.38626 -19.23170 -18.69615 -18.54699 -18.29925 -17.63236 -17.06645 -16.65757 -16.06003 -15.65420 -15.36661 -15.31319 -15.03332 -14.92029 -14.86104 -14.61263 -14.55883 -14.47536 -13.95532 -13.79267 -13.65182 -13.13284 -13.04019 -12.62084 -12.60901 -12.57455 -12.16397 -11.97295 -11.85708 -11.55320 -11.39881 -11.06514 -10.75524 -10.15084 -8.54753 -6.73628 1.13829 1.26212 1.33060 1.41956 1.52001 1.93419 2.07793 2.17334 2.25549 2.92654 3.17232 3.26024 3.30433 3.42109 3.49778 3.67649 3.85056 4.11266 4.41730 4.45163 4.59041 4.65501 4.80334 4.92701 4.96465 5.03022 5.31359 5.44505 5.57334 5.87510 6.42691 6.67826 6.96793 6.99430 7.25557 8.57753 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.017263 B = 0.006258 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.583180 B = 4472.881233 C = 5406.194203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.064 3.936 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.254 1.254 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.064 0.936 9 C 0.211 3.789 10 H 0.079 0.921 11 N -0.706 5.706 12 C 0.507 3.493 13 O -0.579 6.579 14 C -0.123 4.123 15 H 0.133 0.867 16 C -0.117 4.117 17 C -0.096 4.096 18 C -0.098 4.098 19 H 0.128 0.872 20 C 0.496 3.504 21 O -0.549 6.549 22 O -0.507 6.507 23 C 0.436 3.564 24 F -0.185 7.185 25 F -0.196 7.196 26 F -0.188 7.188 27 H 0.281 0.719 28 H 0.413 0.587 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.696 1.544 12.031 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.178 1.178 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.105 3.895 10 H 0.097 0.903 11 N -0.358 5.358 12 C 0.295 3.705 13 O -0.459 6.459 14 C -0.145 4.145 15 H 0.151 0.849 16 C -0.154 4.154 17 C -0.134 4.134 18 C -0.118 4.118 19 H 0.146 0.854 20 C 0.340 3.660 21 O -0.440 6.440 22 O -0.320 6.320 23 C 0.380 3.620 24 F -0.167 7.167 25 F -0.177 7.177 26 F -0.170 7.170 27 H 0.091 0.909 28 H 0.251 0.749 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 11.693 1.994 11.392 16.446 hybrid contribution 0.397 -0.530 -0.567 0.872 sum 12.090 1.464 10.824 16.293 Atomic orbital electron populations 1.69926 1.07653 1.29445 1.46138 1.25551 0.95283 1.01813 0.91622 0.86124 0.79725 0.79865 0.79962 1.19348 1.17773 1.19086 1.20626 0.87230 0.95394 1.54343 0.91773 1.19728 0.96337 0.91782 0.81621 0.90333 1.47017 1.18463 1.59364 1.10947 1.21286 0.81006 0.77219 0.91021 1.90634 1.52404 1.44609 1.58228 1.22948 0.96576 1.03827 0.91101 0.84914 1.22865 0.98700 0.97744 0.96106 1.22831 0.93007 1.04462 0.93061 1.22542 0.88726 0.97501 1.03003 0.85387 1.23414 0.83490 0.88480 0.70655 1.90709 1.83919 1.20763 1.48597 1.84505 1.19863 1.46198 1.81458 1.21736 0.74923 0.85491 0.79814 1.93098 1.88756 1.96228 1.38597 1.93145 1.31490 1.96554 1.96530 1.93074 1.90225 1.47843 1.85810 0.90935 0.74911 0.89690 0.87152 0.87228 0.87520 0.71216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.88 13.96 21.45 0.30 -48.58 16 2 C 0.06 3.29 5.47 84.66 0.46 3.75 16 3 Si 0.92 40.24 26.99 68.60 1.85 42.10 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.25 -10.99 6.82 99.48 0.68 -10.31 16 6 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.54 -27.52 8.52 25.60 0.22 -27.31 16 8 H 0.06 3.61 8.00 -2.91 -0.02 3.59 16 9 C 0.21 9.70 1.71 44.24 0.08 9.77 16 10 H 0.08 3.81 4.73 -2.39 -0.01 3.80 16 11 N -0.71 -27.80 4.91 -446.09 -2.19 -29.99 16 12 C 0.51 18.94 7.00 87.65 0.61 19.56 16 13 O -0.58 -25.49 14.49 -3.03 -0.04 -25.54 16 14 C -0.12 -3.31 3.47 -11.01 -0.04 -3.35 16 15 H 0.13 3.42 7.44 -2.39 -0.02 3.40 16 16 C -0.12 -2.25 7.63 31.12 0.24 -2.01 16 17 C -0.10 -1.47 7.63 31.12 0.24 -1.23 16 18 C -0.10 -2.33 3.56 -11.01 -0.04 -2.36 16 19 H 0.13 3.32 7.47 -2.39 -0.02 3.30 16 20 C 0.50 12.36 7.85 71.23 0.56 12.92 16 21 O -0.55 -17.33 16.66 21.97 0.37 -16.96 16 22 O -0.51 -9.23 13.42 -51.39 -0.69 -9.92 16 23 C 0.44 19.94 2.83 71.98 0.20 20.14 16 24 F -0.19 -8.62 16.89 44.97 0.76 -7.86 16 25 F -0.20 -8.95 15.83 44.97 0.71 -8.24 16 26 F -0.19 -8.31 16.93 44.97 0.76 -7.55 16 27 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.41 14.45 8.59 -92.71 -0.80 13.66 16 29 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 30 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.31 8.09 -2.39 -0.02 1.29 16 33 H 0.43 4.03 9.10 -74.06 -0.67 3.36 16 Total: -1.00 -67.97 302.93 4.06 -63.91 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.30 Total: 18.74 kcal Atomic # 6 Polarization: 27.36 SS G_CDS: 2.53 Total: 29.89 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.89 Total: -78.57 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.37 Total: -52.42 kcal Atomic # 9 Polarization: -25.88 SS G_CDS: 2.23 Total: -23.65 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 1.85 Total: 42.10 kcal Total: -67.97 4.06 -63.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.928 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -295.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds