Wall clock time and date at job start Tue Mar 31 2020 07:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21279 * 120.00115 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99595 * 179.97438 * 12 11 9 15 15 H 1.09005 * 112.84999 * 51.69957 * 14 12 11 16 16 C 1.53779 * 113.61770 * 280.49700 * 14 12 11 17 17 C 1.53783 * 87.08084 * 220.01957 * 16 14 12 18 18 C 1.53782 * 113.61231 * 182.99549 * 14 12 11 19 19 H 1.09003 * 113.61096 * 25.43742 * 18 14 12 20 20 C 1.50705 * 113.61741 * 254.53304 * 18 14 12 21 21 O 1.20823 * 119.99642 * 359.97438 * 20 18 14 22 22 O 1.34228 * 119.99983 * 180.02562 * 20 18 14 23 23 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 24 24 F 1.39905 * 109.47157 * 59.99756 * 23 9 7 25 25 F 1.39900 * 109.47010 * 300.00147 * 23 9 7 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 9 7 27 27 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 29 29 H 1.09003 * 113.61031 * 334.56776 * 16 14 12 30 30 H 1.08994 * 113.61281 * 105.38586 * 16 14 12 31 31 H 1.08998 * 113.61244 * 139.97381 * 17 16 14 32 32 H 1.08995 * 113.61956 * 270.88154 * 17 16 14 33 33 H 0.96695 * 117.00379 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7194 -4.9700 0.9374 14 6 2.8163 -5.9577 0.4933 15 1 3.7737 -5.6964 0.9443 16 6 2.9478 -6.6552 -0.8709 17 6 3.0046 -7.9835 -0.0980 18 6 2.2238 -7.2749 1.0214 19 1 1.1416 -7.3427 0.9094 20 6 2.6938 -7.6358 2.4070 21 8 3.4654 -6.9120 2.9908 22 8 2.2561 -8.7617 2.9922 23 6 0.3720 -2.5805 -1.2490 24 9 1.1766 -2.5066 -2.3910 25 9 -0.5372 -1.5172 -1.2495 26 9 -0.3271 -3.7923 -1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 3.0970 -3.4864 -0.3545 29 1 2.0636 -6.5536 -1.5002 30 1 3.8717 -6.4147 -1.3969 31 1 2.4482 -8.7903 -0.5751 32 1 4.0134 -8.2773 0.1918 33 1 2.5852 -8.9508 3.8816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:04 Heat of formation + Delta-G solvation = -249.355733 kcal Electronic energy + Delta-G solvation = -25000.334571 eV Core-core repulsion = 20612.386754 eV Total energy + Delta-G solvation = -4387.947818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.37121 -46.02675 -45.63118 -40.92497 -39.26243 -37.27194 -36.04117 -34.64532 -32.57771 -28.97647 -27.40590 -26.32215 -24.55912 -22.28137 -21.79456 -20.24379 -19.29181 -18.35939 -17.64077 -17.06904 -16.86499 -16.65711 -16.47284 -15.77300 -15.48844 -14.99992 -14.64057 -14.24392 -13.86647 -13.48801 -12.95376 -12.86473 -12.69299 -12.54075 -12.42946 -12.30139 -12.12487 -11.98909 -11.83506 -11.64178 -11.58217 -11.25043 -11.08626 -10.90047 -10.76071 -10.67698 -10.42823 -10.36599 -9.67220 -9.17580 -8.74048 -8.29034 -6.24760 -4.48760 2.16326 2.96871 3.11704 3.19042 3.24942 3.27491 3.79310 4.19137 4.21996 4.36764 4.52204 4.61020 4.80658 4.92018 5.31985 5.35370 5.50135 5.59111 5.63025 5.74948 5.80223 5.84124 5.86543 6.20059 6.22155 6.43801 6.91947 7.14939 7.45931 7.62056 7.85788 8.29574 8.48633 8.84727 9.19204 10.66944 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.004854 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.638567 B = 5766.462645 C = 6228.508784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.243 3.757 10 H 0.085 0.915 11 N -0.707 5.707 12 C 0.516 3.484 13 O -0.537 6.537 14 C -0.118 4.118 15 H 0.126 0.874 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.089 4.089 19 H 0.139 0.861 20 C 0.492 3.508 21 O -0.513 6.513 22 O -0.515 6.515 23 C 0.417 3.583 24 F -0.209 7.209 25 F -0.137 7.137 26 F -0.218 7.218 27 H 0.268 0.732 28 H 0.400 0.600 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -13.223 -0.609 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.138 3.862 10 H 0.102 0.898 11 N -0.355 5.355 12 C 0.301 3.699 13 O -0.414 6.414 14 C -0.139 4.139 15 H 0.144 0.856 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.108 4.108 19 H 0.157 0.843 20 C 0.334 3.666 21 O -0.401 6.401 22 O -0.327 6.327 23 C 0.361 3.639 24 F -0.191 7.191 25 F -0.118 7.118 26 F -0.200 7.200 27 H 0.079 0.921 28 H 0.234 0.766 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.250 -12.897 -0.540 13.935 hybrid contribution 0.815 0.876 0.253 1.223 sum 6.065 -12.021 -0.287 13.467 Atomic orbital electron populations 1.70397 1.05877 1.27392 1.43681 1.25089 0.95158 1.00161 0.94008 0.86203 0.79571 0.81599 0.78427 1.20197 1.20795 1.19459 1.20880 0.93807 0.88096 1.56093 0.90410 1.19739 0.88808 0.85952 0.91708 0.89762 1.46029 1.17194 1.10416 1.61884 1.20217 0.88148 0.83680 0.77835 1.90690 1.21380 1.82968 1.46399 1.22789 1.00468 0.92082 0.98560 0.85598 1.22823 1.03986 0.94372 0.94868 1.22836 1.00409 0.97705 0.94720 1.22436 1.04002 0.96818 0.87538 0.84307 1.23339 0.77358 0.77487 0.88424 1.90717 1.33825 1.50626 1.64907 1.84553 1.69308 1.42694 1.36145 1.23139 0.80858 0.72777 0.87113 1.92988 1.74395 1.96188 1.55536 1.93407 1.68391 1.53775 1.96199 1.93061 1.81538 1.48444 1.96982 0.92108 0.76646 0.88722 0.89552 0.89520 0.89344 0.73506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.07 9.50 55.43 0.53 -22.55 16 2 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 3 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.55 -14.07 8.46 -34.44 -0.29 -14.36 16 8 H 0.08 1.87 7.74 -52.49 -0.41 1.47 16 9 C 0.24 6.03 2.21 -69.09 -0.15 5.88 16 10 H 0.08 2.36 7.58 -51.93 -0.39 1.96 16 11 N -0.71 -14.27 4.98 -54.93 -0.27 -14.55 16 12 C 0.52 9.97 6.89 -10.98 -0.08 9.89 16 13 O -0.54 -12.36 14.50 5.56 0.08 -12.28 16 14 C -0.12 -1.65 3.47 -90.96 -0.32 -1.97 16 15 H 0.13 1.69 7.44 -51.93 -0.39 1.30 16 16 C -0.12 -1.32 7.63 -25.92 -0.20 -1.52 16 17 C -0.12 -1.10 7.63 -25.92 -0.20 -1.30 16 18 C -0.09 -1.13 3.57 -90.95 -0.32 -1.46 16 19 H 0.14 1.92 7.47 -51.93 -0.39 1.53 16 20 C 0.49 6.54 7.85 36.01 0.28 6.82 16 21 O -0.51 -8.34 16.66 -18.75 -0.31 -8.65 16 22 O -0.52 -5.30 13.42 -39.25 -0.53 -5.83 16 23 C 0.42 10.59 2.81 37.16 0.10 10.69 16 24 F -0.21 -5.06 16.94 2.25 0.04 -5.02 16 25 F -0.14 -3.77 12.91 2.25 0.03 -3.74 16 26 F -0.22 -5.43 15.67 2.25 0.04 -5.39 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.40 6.93 8.54 -40.82 -0.35 6.58 16 29 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.41 2.40 9.10 45.56 0.41 2.81 16 LS Contribution 299.82 15.07 4.52 4.52 Total: -1.00 -32.59 299.82 -4.50 -37.09 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -2.33 Total: 7.04 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -1.26 Total: 14.27 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.25 Total: -37.09 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.76 Total: -26.76 kcal Atomic # 9 Polarization: -14.26 SS G_CDS: 0.10 Total: -14.16 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.59 -4.50 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.266 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds