Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99636 * 2 1 4 4 H 1.48495 * 109.46964 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.46909 * 29.99855 * 3 2 1 6 6 H 1.48497 * 109.47155 * 149.99677 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99597 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47120 * 299.99553 * 9 7 2 11 11 N 1.46500 * 109.46896 * 179.97438 * 9 7 2 12 12 C 1.34782 * 119.99783 * 154.99772 * 11 9 7 13 13 O 1.21279 * 120.00115 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99595 * 179.97438 * 12 11 9 15 15 H 1.09005 * 112.84999 * 51.69957 * 14 12 11 16 16 C 1.53779 * 113.61770 * 280.49700 * 14 12 11 17 17 C 1.53783 * 87.08084 * 220.01957 * 16 14 12 18 18 C 1.53782 * 113.61231 * 182.99549 * 14 12 11 19 19 H 1.09003 * 113.61096 * 25.43742 * 18 14 12 20 20 C 1.50705 * 113.61741 * 254.53304 * 18 14 12 21 21 O 1.20823 * 119.99642 * 359.97438 * 20 18 14 22 22 O 1.34228 * 119.99983 * 180.02562 * 20 18 14 23 23 C 1.52997 * 109.47466 * 59.99800 * 9 7 2 24 24 F 1.39905 * 109.47157 * 59.99756 * 23 9 7 25 25 F 1.39900 * 109.47010 * 300.00147 * 23 9 7 26 26 F 1.39897 * 109.47422 * 179.97438 * 23 9 7 27 27 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00274 * 335.00063 * 11 9 7 29 29 H 1.09003 * 113.61031 * 334.56776 * 16 14 12 30 30 H 1.08994 * 113.61281 * 105.38586 * 16 14 12 31 31 H 1.08998 * 113.61244 * 139.97381 * 17 16 14 32 32 H 1.08995 * 113.61956 * 270.88154 * 17 16 14 33 33 H 0.96695 * 117.00379 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 2.2032 -3.6126 0.0005 12 6 1.8371 -4.8122 0.4939 13 8 0.7194 -4.9700 0.9374 14 6 2.8163 -5.9577 0.4933 15 1 3.7737 -5.6964 0.9443 16 6 2.9478 -6.6552 -0.8709 17 6 3.0046 -7.9835 -0.0980 18 6 2.2238 -7.2749 1.0214 19 1 1.1416 -7.3427 0.9094 20 6 2.6938 -7.6358 2.4070 21 8 3.4654 -6.9120 2.9908 22 8 2.2561 -8.7617 2.9922 23 6 0.3720 -2.5805 -1.2490 24 9 1.1766 -2.5066 -2.3910 25 9 -0.5372 -1.5172 -1.2495 26 9 -0.3271 -3.7923 -1.2492 27 1 -0.4850 0.8400 -0.0004 28 1 3.0970 -3.4864 -0.3545 29 1 2.0636 -6.5536 -1.5002 30 1 3.8717 -6.4147 -1.3969 31 1 2.4482 -8.7903 -0.5751 32 1 4.0134 -8.2773 0.1918 33 1 2.5852 -8.9508 3.8816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = -272.852831 kcal Electronic energy + Delta-G solvation = -25001.353482 eV Core-core repulsion = 20612.386754 eV Total energy + Delta-G solvation = -4388.966728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.42357 -48.05286 -47.73574 -42.01589 -40.57209 -38.47416 -37.03357 -36.46538 -34.47108 -30.74503 -28.40016 -27.56918 -26.55466 -23.60058 -23.16672 -21.81468 -20.45770 -19.61929 -19.04317 -18.86685 -18.66500 -18.45088 -17.97400 -17.33653 -16.89716 -16.62809 -16.16978 -15.56938 -15.13180 -15.00002 -14.96751 -14.60532 -14.46623 -14.30605 -14.08854 -13.97576 -13.79399 -13.63723 -13.19973 -13.07945 -12.74987 -12.68425 -12.59224 -12.56737 -12.22543 -12.13609 -11.59842 -11.53271 -11.38264 -10.71779 -10.70671 -10.08333 -8.22863 -6.53885 1.14905 1.45964 1.46245 1.58148 1.61130 2.00079 2.28192 2.40084 2.54313 2.92580 3.18214 3.44122 3.66955 3.68658 3.80457 3.88491 4.09262 4.24545 4.45628 4.60289 4.66645 4.81081 4.89356 4.97863 5.03616 5.32702 5.40525 5.53585 5.58511 5.63564 6.50977 6.69495 6.98119 7.15261 7.32967 8.69917 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.022971 B = 0.004854 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.638567 B = 5766.462645 C = 6228.508784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.014 3.986 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.562 4.562 8 H 0.092 0.908 9 C 0.249 3.751 10 H 0.043 0.957 11 N -0.702 5.702 12 C 0.510 3.490 13 O -0.581 6.581 14 C -0.119 4.119 15 H 0.137 0.863 16 C -0.115 4.115 17 C -0.096 4.096 18 C -0.100 4.100 19 H 0.125 0.875 20 C 0.496 3.504 21 O -0.549 6.549 22 O -0.507 6.507 23 C 0.416 3.584 24 F -0.201 7.201 25 F -0.151 7.151 26 F -0.218 7.218 27 H 0.268 0.732 28 H 0.415 0.585 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -14.218 -1.251 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.182 1.182 7 C -0.599 4.599 8 H 0.110 0.890 9 C 0.142 3.858 10 H 0.061 0.939 11 N -0.352 5.352 12 C 0.298 3.702 13 O -0.461 6.461 14 C -0.140 4.140 15 H 0.154 0.846 16 C -0.152 4.152 17 C -0.133 4.133 18 C -0.119 4.119 19 H 0.143 0.857 20 C 0.340 3.660 21 O -0.439 6.439 22 O -0.321 6.321 23 C 0.360 3.640 24 F -0.183 7.183 25 F -0.133 7.133 26 F -0.200 7.200 27 H 0.078 0.922 28 H 0.251 0.749 29 H 0.101 0.899 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 7.409 -13.941 -1.182 15.832 hybrid contribution 0.087 1.101 0.500 1.212 sum 7.496 -12.840 -0.682 14.883 Atomic orbital electron populations 1.70532 1.07508 1.28174 1.44740 1.26014 0.95906 1.03751 0.93425 0.85151 0.78539 0.77070 0.78531 1.19724 1.20847 1.18182 1.21233 0.94541 0.88386 1.55731 0.89006 1.19312 0.89047 0.87692 0.89756 0.93947 1.45926 1.17130 1.09848 1.62293 1.21229 0.88566 0.84267 0.76156 1.90663 1.23719 1.83668 1.48022 1.22923 0.99166 0.90214 1.01693 0.84561 1.22860 1.04825 0.94415 0.93112 1.22835 1.01108 0.97285 0.92079 1.22543 1.03678 0.96940 0.88758 0.85736 1.23403 0.76598 0.77553 0.88445 1.90705 1.35647 1.51852 1.65738 1.84505 1.68764 1.41215 1.37571 1.23193 0.80769 0.72394 0.87661 1.92990 1.74059 1.96149 1.55064 1.93375 1.68991 1.54592 1.96319 1.93056 1.81600 1.48288 1.97017 0.92161 0.74869 0.89892 0.86803 0.87314 0.87298 0.71191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.96 9.50 21.45 0.20 -48.76 16 2 C 0.01 0.74 5.20 84.65 0.44 1.18 16 3 Si 0.98 40.80 29.54 68.60 2.03 42.83 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.56 -28.63 8.46 25.60 0.22 -28.42 16 8 H 0.09 4.31 7.74 -2.91 -0.02 4.28 16 9 C 0.25 12.60 2.21 44.24 0.10 12.70 16 10 H 0.04 2.51 7.58 -2.39 -0.02 2.49 16 11 N -0.70 -28.40 4.98 -446.10 -2.22 -30.62 16 12 C 0.51 19.83 6.89 87.66 0.60 20.43 16 13 O -0.58 -27.62 14.50 -3.03 -0.04 -27.66 16 14 C -0.12 -3.18 3.47 -11.01 -0.04 -3.22 16 15 H 0.14 3.41 7.44 -2.38 -0.02 3.39 16 16 C -0.11 -2.14 7.63 31.12 0.24 -1.91 16 17 C -0.10 -1.44 7.63 31.12 0.24 -1.20 16 18 C -0.10 -2.41 3.57 -11.01 -0.04 -2.45 16 19 H 0.12 3.40 7.47 -2.39 -0.02 3.39 16 20 C 0.50 12.52 7.85 71.24 0.56 13.08 16 21 O -0.55 -17.33 16.66 21.97 0.37 -16.97 16 22 O -0.51 -9.44 13.42 -51.40 -0.69 -10.13 16 23 C 0.42 21.45 2.81 71.98 0.20 21.66 16 24 F -0.20 -9.65 16.94 44.97 0.76 -8.89 16 25 F -0.15 -8.57 12.91 44.97 0.58 -7.99 16 26 F -0.22 -11.05 15.67 44.97 0.70 -10.35 16 27 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.41 13.97 8.54 -92.71 -0.79 13.18 16 29 H 0.08 1.79 8.09 -2.39 -0.02 1.77 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 1.27 8.09 -2.39 -0.02 1.25 16 33 H 0.43 4.15 9.10 -74.06 -0.67 3.48 16 Total: -1.00 -71.90 299.82 3.93 -67.96 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -0.27 Total: 18.72 kcal Atomic # 6 Polarization: 29.34 SS G_CDS: 2.52 Total: 31.86 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -2.02 Total: -79.38 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.37 Total: -54.76 kcal Atomic # 9 Polarization: -29.28 SS G_CDS: 2.05 Total: -27.23 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -71.90 3.93 -67.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.889 kcal (2) G-P(sol) polarization free energy of solvation -71.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds