Wall clock time and date at job start Tue Mar 31 2020 06:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 103.00289 * 2 1 4 4 C 1.39106 * 120.00573 * 359.97438 * 3 2 1 5 5 C 1.38188 * 120.22727 * 180.02562 * 4 3 2 6 6 C 1.38026 * 120.24214 * 0.02562 * 5 4 3 7 7 C 1.39660 * 120.00628 * 0.02562 * 6 5 4 8 8 C 1.47743 * 120.11157 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99809 * 310.91970 * 8 7 6 10 10 N 1.34778 * 120.00147 * 130.91980 * 8 7 6 11 11 C 1.36868 * 120.00031 * 185.06230 * 10 8 7 12 12 H 1.08006 * 120.00336 * 7.62227 * 11 10 8 13 13 C 1.39047 * 120.00262 * 187.62380 * 11 10 8 14 14 N 1.31367 * 119.99679 * 14.60131 * 13 11 10 15 15 Si 1.86801 * 120.00307 * 194.60096 * 13 11 10 16 16 H 1.48498 * 109.46801 * 59.99864 * 15 13 11 17 17 H 1.48501 * 109.46922 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47099 * 299.99900 * 15 13 11 19 19 C 1.46503 * 119.99946 * 5.06899 * 10 8 7 20 20 C 1.50690 * 109.47543 * 95.10920 * 19 10 8 21 21 O 1.20825 * 119.99985 * 0.02562 * 20 19 10 22 22 O 1.34228 * 120.00044 * 179.97438 * 20 19 10 23 23 C 1.38677 * 120.00992 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47019 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46618 * 300.00396 * 1 2 3 26 26 H 1.08996 * 109.47297 * 59.99760 * 1 2 3 27 27 H 1.07999 * 119.88530 * 0.05273 * 4 3 2 28 28 H 1.08004 * 119.88113 * 179.97438 * 5 4 3 29 29 H 1.07995 * 119.99555 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99881 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.46607 * 215.11620 * 19 10 8 32 32 H 1.09002 * 109.46637 * 335.10605 * 19 10 8 33 33 H 0.96710 * 117.00020 * 180.02562 * 22 20 19 34 34 H 1.08005 * 120.11489 * 0.24979 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1932 2.6657 -0.0005 5 6 1.4990 4.0133 -0.0011 6 6 2.8156 4.4274 -0.0016 7 6 3.8448 3.4833 -0.0022 8 6 5.2549 3.9240 -0.0022 9 8 5.6293 4.7641 -0.7976 10 7 6.1263 3.3950 0.8795 11 6 7.4058 3.8760 0.9497 12 1 7.6830 4.7570 0.3898 13 6 8.3487 3.2306 1.7419 14 7 8.1111 2.0189 2.1904 15 14 9.9535 4.0863 2.1685 16 1 9.6638 5.3419 2.9066 17 1 10.7803 3.1924 3.0185 18 1 10.6916 4.4050 0.9200 19 6 5.7041 2.3049 1.7625 20 6 6.0835 0.9833 1.1459 21 8 6.6491 0.9548 0.0785 22 8 5.7941 -0.1622 1.7829 23 6 3.5366 2.1224 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.1610 2.3480 -0.0001 28 1 0.7047 4.7452 -0.0019 29 1 3.0500 5.4817 -0.0016 30 1 8.7687 1.5688 2.7433 31 1 6.1961 2.4094 2.7295 32 1 4.6234 2.3455 1.8985 33 1 6.0576 -0.9850 1.3482 34 1 4.3281 1.3875 -0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599822007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:16 Heat of formation + Delta-G solvation = -74.210674 kcal Electronic energy + Delta-G solvation = -21975.476914 eV Core-core repulsion = 18579.733567 eV Total energy + Delta-G solvation = -3395.743347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95215 -38.66735 -37.54631 -35.26062 -34.47064 -32.13349 -31.04014 -30.72948 -28.94501 -27.72552 -25.29814 -22.89797 -22.55585 -21.08090 -19.73875 -17.40530 -17.14665 -16.83055 -16.37687 -16.09924 -15.59285 -14.89461 -14.70313 -14.58382 -14.21854 -14.05330 -13.89691 -13.49579 -13.10480 -12.92833 -12.54612 -12.49174 -11.90524 -11.80379 -11.48358 -11.34273 -11.24039 -10.92916 -10.51729 -10.39027 -10.33071 -10.14447 -9.63280 -9.59545 -9.09651 -8.83572 -8.51325 -8.09671 -7.31836 -6.53112 -3.96172 1.25769 1.46102 1.54024 2.43298 3.11197 3.19210 3.23314 3.41246 3.60941 3.94123 4.01632 4.27545 4.63316 4.92358 4.92535 4.94345 5.06121 5.11913 5.38261 5.48482 5.53394 5.64692 5.89891 5.91896 6.06727 6.33202 6.50375 6.52811 6.68541 6.74732 7.00975 7.43074 7.58718 7.83338 8.26620 8.96852 9.08018 9.21590 9.71404 10.52469 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.005793 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.580687 B = 4832.199205 C = 5844.093178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.116 6.116 3 C -0.089 4.089 4 C -0.132 4.132 5 C -0.106 4.106 6 C -0.083 4.083 7 C -0.074 4.074 8 C 0.484 3.516 9 O -0.571 6.571 10 N -0.417 5.417 11 C -0.291 4.291 12 H 0.113 0.887 13 C 0.028 3.972 14 N -0.889 5.889 15 Si 0.942 3.058 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.139 3.861 20 C 0.501 3.499 21 O -0.513 6.513 22 O -0.531 6.531 23 C -0.081 4.081 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.275 0.725 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.391 0.609 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.086 -3.992 2.073 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.125 5.875 3 C -0.201 4.201 4 C -0.156 4.156 5 C -0.126 4.126 6 C -0.105 4.105 7 C -0.080 4.080 8 C 0.273 3.727 9 O -0.456 6.456 10 N -0.135 5.135 11 C -0.418 4.418 12 H 0.130 0.870 13 C -0.173 4.173 14 N -0.531 5.531 15 Si 0.769 3.231 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.013 3.987 20 C 0.342 3.658 21 O -0.400 6.400 22 O -0.341 6.341 23 C -0.105 4.105 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.247 0.753 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.060 -4.400 1.706 13.887 hybrid contribution 0.263 0.555 -0.052 0.616 sum -12.797 -3.846 1.655 13.464 Atomic orbital electron populations 1.23648 0.95484 1.06793 1.05476 1.85634 1.05496 1.03391 1.92969 1.21550 0.96296 0.96365 1.05928 1.21138 0.97723 0.93215 1.03485 1.20930 0.96296 0.95087 1.00278 1.21234 0.91506 0.99757 0.97969 1.20220 0.95260 0.92873 0.99628 1.17809 0.84802 0.86744 0.83384 1.90638 1.78785 1.36632 1.39522 1.43390 1.10964 1.28289 1.30837 1.19832 0.84990 1.10570 1.26420 0.86974 1.25290 1.00078 0.95036 0.96938 1.69504 1.37043 1.10999 1.35564 0.85723 0.80000 0.78706 0.78716 1.19666 1.20806 1.19679 1.21040 0.98464 0.82091 0.97122 1.23413 0.74654 0.85296 0.82440 1.90621 1.38530 1.87077 1.23750 1.84524 1.77646 1.17021 1.54916 1.21166 0.94604 0.95560 0.99208 0.87620 0.89817 0.89928 0.85995 0.85474 0.85039 0.91337 0.84645 0.90489 0.75294 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.15 101.05 0.92 -0.33 16 2 S -0.12 -1.58 22.56 -107.50 -2.43 -4.01 16 3 C -0.09 -1.42 6.11 -39.10 -0.24 -1.66 16 4 C -0.13 -1.77 9.36 -39.28 -0.37 -2.14 16 5 C -0.11 -1.45 10.02 -39.68 -0.40 -1.85 16 6 C -0.08 -1.43 9.72 -39.13 -0.38 -1.81 16 7 C -0.07 -1.54 4.92 -105.00 -0.52 -2.06 16 8 C 0.48 12.30 7.18 -12.38 -0.09 12.22 16 9 O -0.57 -16.29 16.64 5.28 0.09 -16.20 16 10 N -0.42 -10.82 2.15 -117.21 -0.25 -11.07 16 11 C -0.29 -8.03 9.36 -15.00 -0.14 -8.17 16 12 H 0.11 3.21 7.25 -52.48 -0.38 2.83 16 13 C 0.03 0.72 5.18 -17.45 -0.09 0.63 16 14 N -0.89 -22.92 8.14 55.50 0.45 -22.47 16 15 Si 0.94 20.51 29.58 -169.99 -5.03 15.48 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.14 3.18 4.81 -5.20 -0.02 3.16 16 20 C 0.50 11.60 3.81 36.00 0.14 11.74 16 21 O -0.51 -13.85 16.43 -18.75 -0.31 -14.16 16 22 O -0.53 -10.14 13.42 -39.25 -0.53 -10.66 16 23 C -0.08 -1.58 7.28 -38.94 -0.28 -1.86 16 24 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.64 7.74 -51.92 -0.40 0.24 16 26 H 0.08 0.65 7.74 -51.93 -0.40 0.24 16 27 H 0.12 1.25 5.86 -52.49 -0.31 0.94 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.13 2.15 8.06 -52.49 -0.42 1.72 16 30 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.14 3.18 6.25 -51.93 -0.32 2.86 16 32 H 0.08 1.56 5.47 -51.93 -0.28 1.28 16 33 H 0.39 5.88 9.10 45.56 0.41 6.29 16 34 H 0.13 2.76 4.55 -52.48 -0.24 2.52 16 LS Contribution 303.67 15.07 4.58 4.58 Total: -1.00 -33.46 303.67 -7.22 -40.68 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -2.33 Total: 9.96 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.47 Total: 7.86 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.20 Total: -33.54 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.75 Total: -41.02 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.43 Total: -4.01 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.46 -7.22 -40.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599822007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.528 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds