Wall clock time and date at job start Tue Mar 31 2020 06:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 103.00289 * 2 1 4 4 C 1.39106 * 120.00573 * 359.97438 * 3 2 1 5 5 C 1.38188 * 120.22727 * 180.02562 * 4 3 2 6 6 C 1.38026 * 120.24214 * 0.02562 * 5 4 3 7 7 C 1.39660 * 120.00628 * 0.02562 * 6 5 4 8 8 C 1.47743 * 120.11157 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99809 * 310.91970 * 8 7 6 10 10 N 1.34778 * 120.00147 * 130.91980 * 8 7 6 11 11 C 1.36868 * 120.00031 * 185.06230 * 10 8 7 12 12 H 1.08006 * 120.00336 * 7.62227 * 11 10 8 13 13 C 1.39047 * 120.00262 * 187.62380 * 11 10 8 14 14 N 1.31367 * 119.99679 * 14.60131 * 13 11 10 15 15 Si 1.86801 * 120.00307 * 194.60096 * 13 11 10 16 16 H 1.48498 * 109.46801 * 59.99864 * 15 13 11 17 17 H 1.48501 * 109.46922 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47099 * 299.99900 * 15 13 11 19 19 C 1.46503 * 119.99946 * 5.06899 * 10 8 7 20 20 C 1.50690 * 109.47543 * 95.10920 * 19 10 8 21 21 O 1.20825 * 119.99985 * 0.02562 * 20 19 10 22 22 O 1.34228 * 120.00044 * 179.97438 * 20 19 10 23 23 C 1.38677 * 120.00992 * 180.02562 * 3 2 1 24 24 H 1.08994 * 109.47019 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46618 * 300.00396 * 1 2 3 26 26 H 1.08996 * 109.47297 * 59.99760 * 1 2 3 27 27 H 1.07999 * 119.88530 * 0.05273 * 4 3 2 28 28 H 1.08004 * 119.88113 * 179.97438 * 5 4 3 29 29 H 1.07995 * 119.99555 * 180.02562 * 6 5 4 30 30 H 0.96998 * 119.99881 * 180.02562 * 14 13 11 31 31 H 1.09002 * 109.46607 * 215.11620 * 19 10 8 32 32 H 1.09002 * 109.46637 * 335.10605 * 19 10 8 33 33 H 0.96710 * 117.00020 * 180.02562 * 22 20 19 34 34 H 1.08005 * 120.11489 * 0.24979 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1932 2.6657 -0.0005 5 6 1.4990 4.0133 -0.0011 6 6 2.8156 4.4274 -0.0016 7 6 3.8448 3.4833 -0.0022 8 6 5.2549 3.9240 -0.0022 9 8 5.6293 4.7641 -0.7976 10 7 6.1263 3.3950 0.8795 11 6 7.4058 3.8760 0.9497 12 1 7.6830 4.7570 0.3898 13 6 8.3487 3.2306 1.7419 14 7 8.1111 2.0189 2.1904 15 14 9.9535 4.0863 2.1685 16 1 9.6638 5.3419 2.9066 17 1 10.7803 3.1924 3.0185 18 1 10.6916 4.4050 0.9200 19 6 5.7041 2.3049 1.7625 20 6 6.0835 0.9833 1.1459 21 8 6.6491 0.9548 0.0785 22 8 5.7941 -0.1622 1.7829 23 6 3.5366 2.1224 -0.0005 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.1610 2.3480 -0.0001 28 1 0.7047 4.7452 -0.0019 29 1 3.0500 5.4817 -0.0016 30 1 8.7687 1.5688 2.7433 31 1 6.1961 2.4094 2.7295 32 1 4.6234 2.3455 1.8985 33 1 6.0576 -0.9850 1.3482 34 1 4.3281 1.3875 -0.0050 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599822007.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:15 Heat of formation + Delta-G solvation = -96.777488 kcal Electronic energy + Delta-G solvation = -21976.455484 eV Core-core repulsion = 18579.733567 eV Total energy + Delta-G solvation = -3396.721917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69185 -40.33997 -39.16708 -37.13521 -36.39264 -34.00723 -32.38352 -32.07879 -29.74202 -29.57254 -27.17091 -24.42495 -23.81952 -22.88362 -21.37663 -19.17565 -18.95340 -18.52893 -17.94475 -17.41947 -17.37721 -16.49346 -16.30409 -16.22338 -15.96192 -15.22816 -15.07816 -14.65748 -14.63888 -14.45050 -13.84008 -13.71149 -13.64580 -13.39533 -13.29165 -12.70539 -12.64583 -12.47448 -12.46762 -12.18901 -12.13758 -11.58719 -11.13908 -11.04686 -10.84945 -10.64349 -10.08836 -9.95489 -8.51829 -8.39807 -6.03975 -0.05829 0.18576 0.53564 1.34966 1.38566 1.50731 1.53029 1.64805 1.84448 2.16603 2.45781 2.61396 2.83026 3.13431 3.62921 3.82671 4.03922 4.16436 4.21614 4.33534 4.35756 4.43157 4.62995 4.75648 4.77264 4.88547 4.91717 5.09620 5.28415 5.34622 5.40084 5.78305 5.87027 5.92029 6.27194 6.95976 7.16971 7.40462 7.75878 8.52571 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.005793 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.580687 B = 4832.199205 C = 5844.093178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.156 6.156 3 C -0.089 4.089 4 C -0.113 4.113 5 C -0.085 4.085 6 C -0.093 4.093 7 C -0.106 4.106 8 C 0.472 3.528 9 O -0.621 6.621 10 N -0.429 5.429 11 C -0.335 4.335 12 H 0.086 0.914 13 C -0.002 4.002 14 N -0.898 5.898 15 Si 1.006 2.994 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.280 1.280 19 C 0.144 3.856 20 C 0.513 3.487 21 O -0.559 6.559 22 O -0.515 6.515 23 C -0.102 4.102 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.169 0.831 28 H 0.176 0.824 29 H 0.130 0.870 30 H 0.280 0.720 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.412 0.588 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 -4.833 3.171 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.085 5.915 3 C -0.202 4.202 4 C -0.137 4.137 5 C -0.105 4.105 6 C -0.115 4.115 7 C -0.110 4.110 8 C 0.263 3.737 9 O -0.509 6.509 10 N -0.145 5.145 11 C -0.462 4.462 12 H 0.104 0.896 13 C -0.202 4.202 14 N -0.538 5.538 15 Si 0.828 3.172 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.206 1.206 19 C 0.019 3.981 20 C 0.356 3.644 21 O -0.449 6.449 22 O -0.327 6.327 23 C -0.126 4.126 24 H 0.145 0.855 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.186 0.814 28 H 0.193 0.807 29 H 0.148 0.852 30 H 0.091 0.909 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.271 0.729 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.332 -5.307 2.848 17.407 hybrid contribution 1.075 0.669 -0.406 1.329 sum -15.257 -4.637 2.442 16.132 Atomic orbital electron populations 1.23829 0.90321 1.08822 1.07088 1.85835 1.11105 1.01907 1.92620 1.21733 0.95342 0.98325 1.04764 1.21703 0.99175 0.92507 1.00291 1.21406 0.95474 0.96352 0.97233 1.21385 0.92496 0.99152 0.98421 1.19912 0.92994 0.94430 1.03702 1.18691 0.86898 0.85780 0.82312 1.90564 1.80321 1.38697 1.41327 1.43542 1.10692 1.28999 1.31305 1.19787 0.86837 1.11146 1.28468 0.89634 1.26108 1.02746 0.95484 0.95855 1.69580 1.37895 1.11345 1.34992 0.84813 0.75921 0.78304 0.78166 1.18460 1.19146 1.20612 1.21033 0.99721 0.81462 0.95933 1.23321 0.73367 0.86150 0.81573 1.90600 1.40839 1.87827 1.25651 1.84447 1.76982 1.17107 1.54160 1.20921 0.95842 0.94247 1.01612 0.85459 0.88004 0.88337 0.81417 0.80682 0.85165 0.90890 0.85442 0.88116 0.72939 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.15 113.37 1.04 -0.57 16 2 S -0.16 -3.87 22.56 -56.49 -1.27 -5.15 16 3 C -0.09 -2.66 6.11 22.58 0.14 -2.53 16 4 C -0.11 -2.53 9.36 22.47 0.21 -2.32 16 5 C -0.09 -1.98 10.02 22.21 0.22 -1.76 16 6 C -0.09 -3.13 9.72 22.56 0.22 -2.91 16 7 C -0.11 -4.51 4.92 -20.11 -0.10 -4.61 16 8 C 0.47 25.64 7.18 86.76 0.62 26.26 16 9 O -0.62 -38.13 16.64 -4.01 -0.07 -38.19 16 10 N -0.43 -23.57 2.15 -642.99 -1.38 -24.95 16 11 C -0.34 -19.64 9.36 84.10 0.79 -18.85 16 12 H 0.09 5.31 7.25 -2.91 -0.02 5.29 16 13 C 0.00 -0.09 5.18 84.96 0.44 0.35 16 14 N -0.90 -47.10 8.14 21.68 0.18 -46.93 16 15 Si 1.01 42.90 29.58 68.60 2.03 44.92 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 C 0.14 6.84 4.81 85.63 0.41 7.25 16 20 C 0.51 24.45 3.81 71.23 0.27 24.72 16 21 O -0.56 -31.52 16.43 21.97 0.36 -31.16 16 22 O -0.52 -19.61 13.42 -51.40 -0.69 -20.30 16 23 C -0.10 -4.01 7.28 22.69 0.17 -3.84 16 24 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 0.94 7.74 -2.39 -0.02 0.92 16 26 H 0.10 0.95 7.74 -2.39 -0.02 0.94 16 27 H 0.17 2.24 5.86 -2.91 -0.02 2.23 16 28 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 30 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.13 6.19 6.25 -2.39 -0.01 6.18 16 32 H 0.10 4.23 5.47 -2.39 -0.01 4.22 16 33 H 0.41 12.13 9.10 -74.05 -0.67 11.46 16 34 H 0.10 4.53 4.55 -2.91 -0.01 4.52 16 Total: -1.00 -79.47 303.67 4.07 -75.40 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.49 Total: 25.15 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 4.43 Total: 21.20 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.21 Total: -71.88 kcal Atomic # 8 Polarization: -89.25 SS G_CDS: -0.40 Total: -89.65 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -1.27 Total: -5.15 kcal Total: -79.47 4.07 -75.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599822007.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.376 kcal (2) G-P(sol) polarization free energy of solvation -79.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds