Wall clock time and date at job start Tue Mar 31 2020 06:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99860 * 2 1 4 4 H 1.48498 * 109.47167 * 264.52728 * 3 2 1 5 5 H 1.48497 * 109.47039 * 24.52668 * 3 2 1 6 6 H 1.48493 * 109.47052 * 144.52709 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 341.70912 * 7 2 1 9 9 C 1.50707 * 120.00142 * 161.71393 * 7 2 1 10 10 C 1.53006 * 115.54618 * 302.27586 * 9 7 2 11 11 N 1.46493 * 109.47274 * 269.12034 * 10 9 7 12 12 C 1.38841 * 120.00003 * 185.10343 * 11 10 9 13 13 C 1.38924 * 120.17294 * 354.06434 * 12 11 10 14 14 C 1.37987 * 120.10625 * 179.97438 * 13 12 11 15 15 C 1.38558 * 120.45979 * 0.02562 * 14 13 12 16 16 C 1.37902 * 120.34651 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 120.05664 * 179.97438 * 16 15 14 18 18 C 1.39934 * 119.88453 * 0.25142 * 16 15 14 19 19 C 1.47210 * 120.22490 * 179.72392 * 18 16 15 20 20 O 1.21533 * 119.99967 * 94.33608 * 19 18 16 21 21 O 1.34776 * 119.99923 * 274.32970 * 19 18 16 22 22 C 1.52990 * 117.51805 * 87.98176 * 9 7 2 23 23 C 1.53002 * 117.49812 * 156.61401 * 9 7 2 24 24 H 0.96994 * 120.00195 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46508 * 149.12130 * 10 9 7 26 26 H 1.09002 * 109.46971 * 29.12348 * 10 9 7 27 27 H 0.96996 * 120.00184 * 5.11014 * 11 10 9 28 28 H 1.08003 * 119.94316 * 359.97438 * 13 12 11 29 29 H 1.08005 * 119.76821 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.82359 * 180.02562 * 15 14 13 31 31 H 0.96707 * 116.99856 * 185.05457 * 21 19 18 32 32 H 1.09005 * 117.49645 * 214.96756 * 22 9 7 33 33 H 1.08992 * 117.50054 * 359.97438 * 22 9 7 34 34 H 1.08998 * 117.49830 * 359.96913 * 23 9 7 35 35 H 1.09002 * 117.49788 * 144.96979 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6122 1.9797 -1.3937 5 1 1.3935 2.6833 0.5812 6 1 3.4840 1.4764 0.8125 7 6 2.0045 -1.1940 -0.0005 8 1 1.5055 -2.1058 0.2926 9 6 3.4545 -1.2267 -0.4101 10 6 3.7561 -0.6957 -1.8130 11 7 3.6981 -1.7986 -2.7754 12 6 4.0420 -1.5805 -4.1028 13 6 4.3222 -0.2951 -4.5493 14 6 4.6643 -0.0799 -5.8687 15 6 4.7311 -1.1397 -6.7588 16 6 4.4567 -2.4232 -6.3358 17 17 4.5420 -3.7453 -7.4576 18 6 4.1036 -2.6573 -5.0021 19 6 3.8033 -4.0237 -4.5439 20 8 4.6767 -4.7009 -4.0385 21 8 2.5596 -4.5235 -4.6848 22 6 4.5020 -0.9827 0.6780 23 6 4.3079 -2.3878 0.1044 24 1 -0.4850 0.8400 0.0004 25 1 4.7520 -0.2528 -1.8274 26 1 3.0182 0.0602 -2.0817 27 1 3.4195 -2.6813 -2.4854 28 1 4.2722 0.5370 -3.8626 29 1 4.8807 0.9217 -6.2100 30 1 5.0003 -0.9595 -7.7891 31 1 2.3909 -5.3954 -4.3020 32 1 5.4061 -0.4439 0.3944 33 1 4.1426 -0.7980 1.6902 34 1 3.8207 -3.1277 0.7394 35 1 5.0839 -2.7736 -0.5567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601061228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:19 Heat of formation + Delta-G solvation = -44.548643 kcal Electronic energy + Delta-G solvation = -21395.578829 eV Core-core repulsion = 17999.078019 eV Total energy + Delta-G solvation = -3396.500811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.47939 -38.90163 -37.54854 -36.57928 -35.91273 -34.51428 -32.31869 -31.28952 -29.42647 -26.69874 -25.11743 -24.63800 -21.92437 -21.56184 -21.13629 -19.25768 -18.22075 -17.64176 -17.04992 -16.62756 -16.02094 -15.17383 -14.90975 -14.70153 -14.56740 -14.05343 -14.00172 -13.49094 -13.36027 -13.08488 -12.75767 -12.33651 -12.04338 -11.67364 -11.61110 -11.38823 -11.16330 -11.12098 -10.88605 -10.66249 -10.55173 -10.38166 -9.92986 -9.72710 -9.30658 -8.95192 -8.87187 -8.47257 -7.34652 -6.29811 -4.25539 0.99162 1.47913 1.95294 2.15135 3.11789 3.13131 3.26250 3.33063 3.60702 3.66285 4.27031 4.70218 4.84547 5.07943 5.10954 5.14877 5.33481 5.44484 5.50405 5.59557 5.85255 5.90275 6.02889 6.08045 6.13719 6.24310 6.37503 6.40772 6.49323 6.60683 6.63404 6.86181 6.99588 7.43430 7.57510 7.85722 7.93280 8.32202 8.76422 9.35378 10.81675 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.005014 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.931045 B = 5582.619099 C = 6072.601784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.084 3.916 3 Si 0.863 3.137 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.496 4.496 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.146 3.854 11 N -0.705 5.705 12 C 0.283 3.717 13 C -0.199 4.199 14 C -0.034 4.034 15 C -0.187 4.187 16 C 0.053 3.947 17 Cl -0.067 7.067 18 C -0.203 4.203 19 C 0.542 3.458 20 O -0.500 6.500 21 O -0.504 6.504 22 C -0.188 4.188 23 C -0.182 4.182 24 H 0.267 0.733 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.404 0.596 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.534 -1.860 -11.899 14.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.120 4.120 3 Si 0.689 3.311 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.532 4.532 8 H 0.095 0.905 9 C -0.016 4.016 10 C 0.022 3.978 11 N -0.326 5.326 12 C 0.170 3.830 13 C -0.221 4.221 14 C -0.054 4.054 15 C -0.208 4.208 16 C 0.026 3.974 17 Cl -0.038 7.038 18 C -0.211 4.211 19 C 0.384 3.616 20 O -0.387 6.387 21 O -0.315 6.315 22 C -0.226 4.226 23 C -0.219 4.219 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.240 0.760 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.268 0.732 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.659 -1.508 -11.823 14.732 hybrid contribution 0.097 -0.120 0.340 0.373 sum 8.756 -1.628 -11.483 14.532 Atomic orbital electron populations 1.69976 1.06552 1.27526 1.47474 1.24916 0.94367 0.99085 0.93672 0.87113 0.81353 0.83650 0.78965 1.19995 1.21514 1.17784 1.20193 0.90527 0.95791 1.46724 0.90523 1.19567 0.93699 0.99033 0.89269 1.21566 0.99240 0.88520 0.88424 1.44933 1.69113 1.14046 1.04545 1.17584 0.89193 0.91758 0.84428 1.20766 1.09121 0.94996 0.97260 1.20956 0.93768 0.98606 0.92036 1.20584 1.09254 0.89994 1.00947 1.20459 0.99630 0.89332 0.87990 1.98371 1.96567 1.47575 1.61247 1.18078 1.18873 0.90280 0.93849 1.20589 0.79943 0.86640 0.74436 1.90914 1.47452 1.59861 1.40520 1.84747 1.32688 1.39867 1.74179 1.23114 1.00535 0.98738 1.00190 1.22757 1.02972 0.91791 1.04379 0.92304 0.93273 0.91036 0.76025 0.84616 0.84751 0.84806 0.73175 0.91130 0.89181 0.89553 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 13.96 55.43 0.77 -24.48 16 2 C 0.08 2.25 5.25 -17.82 -0.09 2.16 16 3 Si 0.86 19.67 25.50 -169.99 -4.33 15.34 16 4 H -0.27 -5.93 6.63 56.52 0.37 -5.55 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.25 -5.52 6.36 56.52 0.36 -5.17 16 7 C -0.50 -12.89 9.35 -34.44 -0.32 -13.21 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C -0.01 -0.31 0.94 -155.66 -0.15 -0.45 16 10 C 0.15 2.84 4.12 -4.04 -0.02 2.82 16 11 N -0.71 -12.90 5.47 -58.44 -0.32 -13.22 16 12 C 0.28 4.72 6.65 -83.61 -0.56 4.17 16 13 C -0.20 -2.89 9.28 -39.42 -0.37 -3.25 16 14 C -0.03 -0.41 10.02 -39.56 -0.40 -0.80 16 15 C -0.19 -2.26 9.80 -39.59 -0.39 -2.65 16 16 C 0.05 0.76 6.35 -39.07 -0.25 0.52 16 17 Cl -0.07 -0.87 28.04 -51.86 -1.45 -2.33 16 18 C -0.20 -3.30 5.77 -104.79 -0.60 -3.90 16 19 C 0.54 8.87 5.57 34.37 0.19 9.06 16 20 O -0.50 -9.15 17.90 -19.29 -0.35 -9.49 16 21 O -0.50 -7.01 13.44 -40.70 -0.55 -7.56 16 22 C -0.19 -3.68 8.47 -26.73 -0.23 -3.91 16 23 C -0.18 -3.50 9.48 -26.73 -0.25 -3.75 16 24 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 26 H 0.07 1.51 5.37 -51.93 -0.28 1.23 16 27 H 0.40 7.60 7.07 -40.82 -0.29 7.31 16 28 H 0.14 1.91 6.75 -52.48 -0.35 1.56 16 29 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.41 3.73 9.11 45.56 0.42 4.14 16 32 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 33 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -29.92 316.38 -7.95 -37.87 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -3.06 Total: 12.32 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -3.43 Total: -13.21 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.45 Total: -37.70 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.89 Total: -17.05 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.33 Total: 15.34 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.45 Total: -2.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.92 -7.95 -37.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.681 kcal (2) G-P(sol) polarization free energy of solvation -29.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds