Wall clock time and date at job start Tue Mar 31 2020 06:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99860 * 2 1 4 4 H 1.48498 * 109.47167 * 264.52728 * 3 2 1 5 5 H 1.48497 * 109.47039 * 24.52668 * 3 2 1 6 6 H 1.48493 * 109.47052 * 144.52709 * 3 2 1 7 7 C 1.37874 * 120.00331 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00112 * 341.70912 * 7 2 1 9 9 C 1.50707 * 120.00142 * 161.71393 * 7 2 1 10 10 C 1.53006 * 115.54618 * 302.27586 * 9 7 2 11 11 N 1.46493 * 109.47274 * 269.12034 * 10 9 7 12 12 C 1.38841 * 120.00003 * 185.10343 * 11 10 9 13 13 C 1.38924 * 120.17294 * 354.06434 * 12 11 10 14 14 C 1.37987 * 120.10625 * 179.97438 * 13 12 11 15 15 C 1.38558 * 120.45979 * 0.02562 * 14 13 12 16 16 C 1.37902 * 120.34651 * 359.97438 * 15 14 13 17 17 Cl 1.73599 * 120.05664 * 179.97438 * 16 15 14 18 18 C 1.39934 * 119.88453 * 0.25142 * 16 15 14 19 19 C 1.47210 * 120.22490 * 179.72392 * 18 16 15 20 20 O 1.21533 * 119.99967 * 94.33608 * 19 18 16 21 21 O 1.34776 * 119.99923 * 274.32970 * 19 18 16 22 22 C 1.52990 * 117.51805 * 87.98176 * 9 7 2 23 23 C 1.53002 * 117.49812 * 156.61401 * 9 7 2 24 24 H 0.96994 * 120.00195 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46508 * 149.12130 * 10 9 7 26 26 H 1.09002 * 109.46971 * 29.12348 * 10 9 7 27 27 H 0.96996 * 120.00184 * 5.11014 * 11 10 9 28 28 H 1.08003 * 119.94316 * 359.97438 * 13 12 11 29 29 H 1.08005 * 119.76821 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.82359 * 180.02562 * 15 14 13 31 31 H 0.96707 * 116.99856 * 185.05457 * 21 19 18 32 32 H 1.09005 * 117.49645 * 214.96756 * 22 9 7 33 33 H 1.08992 * 117.50054 * 359.97438 * 22 9 7 34 34 H 1.08998 * 117.49830 * 359.96913 * 23 9 7 35 35 H 1.09002 * 117.49788 * 144.96979 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6122 1.9797 -1.3937 5 1 1.3935 2.6833 0.5812 6 1 3.4840 1.4764 0.8125 7 6 2.0045 -1.1940 -0.0005 8 1 1.5055 -2.1058 0.2926 9 6 3.4545 -1.2267 -0.4101 10 6 3.7561 -0.6957 -1.8130 11 7 3.6981 -1.7986 -2.7754 12 6 4.0420 -1.5805 -4.1028 13 6 4.3222 -0.2951 -4.5493 14 6 4.6643 -0.0799 -5.8687 15 6 4.7311 -1.1397 -6.7588 16 6 4.4567 -2.4232 -6.3358 17 17 4.5420 -3.7453 -7.4576 18 6 4.1036 -2.6573 -5.0021 19 6 3.8033 -4.0237 -4.5439 20 8 4.6767 -4.7009 -4.0385 21 8 2.5596 -4.5235 -4.6848 22 6 4.5020 -0.9827 0.6780 23 6 4.3079 -2.3878 0.1044 24 1 -0.4850 0.8400 0.0004 25 1 4.7520 -0.2528 -1.8274 26 1 3.0182 0.0602 -2.0817 27 1 3.4195 -2.6813 -2.4854 28 1 4.2722 0.5370 -3.8626 29 1 4.8807 0.9217 -6.2100 30 1 5.0003 -0.9595 -7.7891 31 1 2.3909 -5.3954 -4.3020 32 1 5.4061 -0.4439 0.3944 33 1 4.1426 -0.7980 1.6902 34 1 3.8207 -3.1277 0.7394 35 1 5.0839 -2.7736 -0.5567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601061228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:18 Heat of formation + Delta-G solvation = -63.893126 kcal Electronic energy + Delta-G solvation = -21396.417669 eV Core-core repulsion = 17999.078019 eV Total energy + Delta-G solvation = -3397.339650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.67132 -40.11095 -38.99880 -37.68084 -37.13436 -35.78436 -34.32649 -32.38949 -30.60930 -28.37508 -26.77909 -25.76284 -23.35896 -22.83783 -22.31462 -20.95654 -19.44196 -18.95145 -18.47927 -17.92231 -17.38123 -16.92171 -16.14600 -15.88067 -15.73076 -15.50030 -15.31648 -14.85041 -14.77107 -14.49383 -14.22602 -13.91538 -13.09343 -13.01112 -12.97247 -12.71345 -12.53993 -12.43226 -12.23100 -12.19069 -12.11588 -11.75862 -11.55061 -11.18393 -11.00408 -10.63579 -10.37593 -9.94369 -8.57124 -8.33925 -6.33897 -0.07588 0.40718 0.86591 0.94731 1.33950 1.43343 1.55050 2.04598 2.27981 2.37215 2.60104 2.91128 3.34540 3.85042 3.93416 4.04272 4.07950 4.24038 4.32614 4.35679 4.40723 4.47550 4.56227 4.73085 4.84309 5.01758 5.05312 5.14134 5.26158 5.38090 5.39237 5.44095 5.63968 5.66407 6.15892 6.26590 6.49060 6.69145 6.81862 7.30438 8.81589 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.005014 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.931045 B = 5582.619099 C = 6072.601784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.029 3.971 3 Si 0.924 3.076 4 H -0.251 1.251 5 H -0.297 1.297 6 H -0.232 1.232 7 C -0.499 4.499 8 H 0.027 0.973 9 C -0.036 4.036 10 C 0.158 3.842 11 N -0.719 5.719 12 C 0.259 3.741 13 C -0.208 4.208 14 C -0.020 4.020 15 C -0.172 4.172 16 C 0.038 3.962 17 Cl -0.061 7.061 18 C -0.224 4.224 19 C 0.545 3.455 20 O -0.528 6.528 21 O -0.505 6.505 22 C -0.174 4.174 23 C -0.170 4.170 24 H 0.267 0.733 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.395 0.605 28 H 0.141 0.859 29 H 0.177 0.823 30 H 0.166 0.834 31 H 0.428 0.572 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.112 0.047 -13.751 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.170 4.170 3 Si 0.747 3.253 4 H -0.175 1.175 5 H -0.224 1.224 6 H -0.155 1.155 7 C -0.535 4.535 8 H 0.045 0.955 9 C -0.038 4.038 10 C 0.035 3.965 11 N -0.342 5.342 12 C 0.150 3.850 13 C -0.230 4.230 14 C -0.039 4.039 15 C -0.193 4.193 16 C 0.011 3.989 17 Cl -0.032 7.032 18 C -0.232 4.232 19 C 0.388 3.612 20 O -0.418 6.418 21 O -0.318 6.318 22 C -0.212 4.212 23 C -0.207 4.207 24 H 0.076 0.924 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.229 0.771 28 H 0.159 0.841 29 H 0.194 0.806 30 H 0.184 0.816 31 H 0.289 0.711 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.257 0.377 -13.710 17.744 hybrid contribution -0.766 -0.852 0.824 1.411 sum 10.491 -0.474 -12.887 16.624 Atomic orbital electron populations 1.70126 1.08672 1.28410 1.50143 1.25772 0.94952 1.03017 0.93255 0.86120 0.80399 0.78299 0.80465 1.17523 1.22428 1.15471 1.20324 0.93118 0.93969 1.46139 0.95519 1.19452 0.91463 1.01682 0.91168 1.21285 0.99875 0.88330 0.87059 1.44811 1.70842 1.13223 1.05326 1.17840 0.90510 0.92919 0.83772 1.21023 1.09192 0.94105 0.98703 1.21426 0.91401 1.00440 0.90607 1.21052 1.06805 0.88924 1.02491 1.20711 1.00090 0.90544 0.87563 1.98372 1.96540 1.47613 1.60705 1.18270 1.19989 0.90043 0.94880 1.20762 0.79987 0.86814 0.73676 1.90887 1.48276 1.60715 1.41922 1.84710 1.31757 1.41293 1.74046 1.23152 1.00404 0.98729 0.98882 1.22727 1.02468 0.91541 1.04003 0.92419 0.90680 0.92987 0.77057 0.84114 0.80563 0.81647 0.71060 0.87978 0.90028 0.90587 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.95 13.96 21.45 0.30 -55.65 16 2 C 0.03 1.61 5.25 84.65 0.44 2.05 16 3 Si 0.92 40.05 25.50 68.60 1.75 41.80 16 4 H -0.25 -9.88 6.63 99.48 0.66 -9.22 16 5 H -0.30 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.23 -9.14 6.36 99.48 0.63 -8.50 16 7 C -0.50 -26.83 9.35 25.60 0.24 -26.59 16 8 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 9 C -0.04 -1.54 0.94 -52.93 -0.05 -1.59 16 10 C 0.16 5.91 4.12 86.38 0.36 6.26 16 11 N -0.72 -25.99 5.47 -338.79 -1.85 -27.84 16 12 C 0.26 8.33 6.65 38.73 0.26 8.58 16 13 C -0.21 -5.43 9.28 22.37 0.21 -5.22 16 14 C -0.02 -0.38 10.02 22.29 0.22 -0.16 16 15 C -0.17 -3.49 9.80 22.27 0.22 -3.27 16 16 C 0.04 1.02 6.35 22.60 0.14 1.16 16 17 Cl -0.06 -1.51 28.04 -2.72 -0.08 -1.58 16 18 C -0.22 -7.07 5.77 -19.97 -0.12 -7.18 16 19 C 0.54 17.80 5.57 70.18 0.39 18.19 16 20 O -0.53 -19.46 17.90 19.73 0.35 -19.11 16 21 O -0.50 -14.13 13.44 -56.87 -0.76 -14.89 16 22 C -0.17 -6.41 8.47 30.59 0.26 -6.15 16 23 C -0.17 -6.41 9.48 30.60 0.29 -6.12 16 24 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 25 H 0.08 2.39 7.66 -2.38 -0.02 2.37 16 26 H 0.05 2.12 5.37 -2.39 -0.01 2.11 16 27 H 0.40 15.17 7.07 -92.71 -0.66 14.52 16 28 H 0.14 3.50 6.75 -2.91 -0.02 3.48 16 29 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.43 7.87 9.11 -74.05 -0.67 7.19 16 32 H 0.10 3.16 8.03 -2.38 -0.02 3.14 16 33 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.08 2.98 8.14 -2.39 -0.02 2.97 16 35 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -67.73 316.38 2.27 -65.46 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: -0.30 Total: 31.84 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 2.87 Total: -20.03 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -1.55 Total: -83.49 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.41 Total: -34.00 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.75 Total: 41.80 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -67.73 2.27 -65.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601061228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.563 kcal (2) G-P(sol) polarization free energy of solvation -67.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds