Wall clock time and date at job start Tue Mar 31 2020 07:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48502 * 109.47031 * 240.00139 * 3 2 1 5 5 H 1.48506 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47400 * 119.99524 * 3 2 1 7 7 C 1.37878 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.17020 * 179.97438 * 9 7 2 11 11 N 1.47490 * 87.93315 * 220.13782 * 10 9 7 12 12 C 1.46896 * 110.99658 * 138.70218 * 11 10 9 13 13 C 1.50703 * 109.46860 * 170.00333 * 12 11 10 14 14 C 1.37895 * 119.93166 * 104.72402 * 13 12 11 15 15 C 1.39654 * 119.85927 * 180.27212 * 14 13 12 16 16 C 1.47661 * 120.13371 * 179.97438 * 15 14 13 17 17 O 1.21479 * 120.00325 * 0.02562 * 16 15 14 18 18 O 1.34717 * 120.00189 * 180.02562 * 16 15 14 19 19 C 1.39688 * 119.73078 * 0.02562 * 15 14 13 20 20 C 1.37855 * 119.85964 * 359.97438 * 19 15 14 21 21 C 1.38505 * 119.93104 * 284.99984 * 13 12 11 22 22 Cl 1.73603 * 119.86173 * 359.74725 * 21 13 12 23 23 C 1.47480 * 87.83309 * 27.01398 * 11 10 9 24 24 H 0.97002 * 119.99760 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.25807 * 312.94780 * 9 7 2 26 26 H 1.08996 * 113.47410 * 105.37598 * 10 9 7 27 27 H 1.08999 * 113.53421 * 334.91506 * 10 9 7 28 28 H 1.09002 * 109.47675 * 50.00662 * 12 11 10 29 29 H 1.08999 * 109.47716 * 289.99920 * 12 11 10 30 30 H 1.08004 * 120.07074 * 0.29858 * 14 13 12 31 31 H 0.96705 * 117.00566 * 180.02562 * 18 16 15 32 32 H 1.07996 * 120.06923 * 179.97438 * 19 15 14 33 33 H 1.07995 * 119.93419 * 179.97438 * 20 19 15 34 34 H 1.09000 * 113.47948 * 87.75612 * 23 11 10 35 35 H 1.09000 * 113.47531 * 218.22443 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2050 -4.3602 -0.9496 12 6 1.9206 -5.0901 -2.0046 13 6 0.9383 -5.9038 -2.8073 14 6 0.5659 -5.4855 -4.0674 15 6 -0.3487 -6.2376 -4.8076 16 6 -0.7522 -5.7950 -6.1573 17 8 -0.2880 -4.7750 -6.6262 18 8 -1.6351 -6.5223 -6.8689 19 6 -0.8812 -7.4098 -4.2656 20 6 -0.5010 -7.8174 -3.0048 21 6 0.4072 -7.0672 -2.2755 22 17 0.8806 -7.5868 -0.6882 23 6 0.8518 -2.9993 -1.3949 24 1 -0.4850 0.8401 -0.0004 25 1 0.4446 -2.5306 0.7333 26 1 2.1889 -4.2509 0.9645 27 1 3.1382 -3.5668 -0.4231 28 1 2.6575 -5.7535 -1.5518 29 1 2.4251 -4.3800 -2.6598 30 1 0.9810 -4.5783 -4.4811 31 1 -1.8684 -6.1928 -7.7476 32 1 -1.5892 -7.9954 -4.8331 33 1 -0.9122 -8.7232 -2.5844 34 1 1.4937 -2.6227 -2.1913 35 1 -0.2089 -2.8755 -1.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:46 Heat of formation + Delta-G solvation = -38.244576 kcal Electronic energy + Delta-G solvation = -20744.074612 eV Core-core repulsion = 17347.847166 eV Total energy + Delta-G solvation = -3396.227446 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61282 -39.43492 -38.40268 -36.41835 -36.22160 -33.24913 -32.15259 -31.22119 -28.67749 -25.69755 -24.94080 -24.67262 -23.02444 -21.86778 -20.75515 -18.61935 -18.13977 -17.51776 -16.57774 -16.46415 -15.79941 -15.73932 -14.93172 -14.76862 -14.32850 -14.10201 -13.72572 -13.63667 -13.20425 -12.88240 -12.40926 -11.91525 -11.85201 -11.72066 -11.62010 -11.41940 -11.23426 -10.95836 -10.83587 -10.75761 -10.54144 -10.29917 -9.79369 -9.42159 -9.05661 -8.95368 -8.72709 -8.42655 -8.03043 -6.05043 -4.09883 0.42119 1.12326 2.12728 2.32860 2.79467 3.30667 3.36001 3.37822 3.50672 4.40294 4.50506 4.61628 4.83486 4.98356 4.99389 5.23964 5.26837 5.38803 5.49679 5.73759 5.88358 5.89845 6.02778 6.07198 6.22164 6.27784 6.33675 6.47026 6.50705 6.67732 6.69992 7.14132 7.15561 7.69119 7.72271 7.89922 8.03992 8.37029 8.93201 9.55308 11.04453 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.004371 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.640328 B = 6404.165041 C = 7865.325545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.043 3.957 10 C -0.002 4.002 11 N -0.472 5.472 12 C 0.052 3.948 13 C -0.065 4.065 14 C -0.035 4.035 15 C -0.131 4.131 16 C 0.529 3.471 17 O -0.509 6.509 18 O -0.514 6.514 19 C -0.056 4.056 20 C -0.130 4.130 21 C 0.020 3.980 22 Cl -0.047 7.047 23 C 0.003 3.997 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.145 0.855 31 H 0.414 0.586 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.054 0.946 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -17.072 -9.464 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.024 3.976 10 C -0.131 4.131 11 N -0.194 5.194 12 C -0.076 4.076 13 C -0.066 4.066 14 C -0.054 4.054 15 C -0.132 4.132 16 C 0.373 3.627 17 O -0.398 6.398 18 O -0.326 6.326 19 C -0.075 4.075 20 C -0.149 4.149 21 C -0.007 4.007 22 Cl -0.017 7.017 23 C -0.125 4.125 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.273 0.727 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.072 0.928 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.819 -17.352 -8.836 19.557 hybrid contribution 0.892 1.578 -0.974 2.057 sum -0.927 -15.774 -9.810 18.598 Atomic orbital electron populations 1.69958 1.05998 1.26870 1.49438 1.25010 0.94800 0.99133 0.94562 0.86687 0.79663 0.83154 0.78667 1.20242 1.21246 1.20146 1.20987 0.92695 0.90255 1.51661 0.92473 1.20073 0.94269 0.90767 0.92503 1.23999 0.95686 0.97543 0.95848 1.68943 1.26953 1.14100 1.09415 1.21672 0.93818 0.97412 0.94697 1.19721 0.99031 0.93991 0.93866 1.21180 0.93576 0.98291 0.92320 1.19014 1.03054 0.98717 0.92409 1.20824 0.75597 0.80673 0.85604 1.90923 1.53420 1.24686 1.70774 1.84541 1.58842 1.55040 1.34139 1.21310 0.97328 0.94435 0.94437 1.21017 0.98304 1.00982 0.94594 1.21132 0.96945 0.95064 0.87572 1.98390 1.90567 1.89623 1.23169 1.24163 1.00309 0.86613 1.01454 0.92798 0.91779 0.91878 0.92738 0.90087 0.92625 0.83756 0.72731 0.83823 0.84181 0.92762 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.26 55.43 0.74 -24.82 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.96 8.83 -34.44 -0.30 -14.26 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.04 1.06 3.76 -91.24 -0.34 0.72 16 10 C 0.00 -0.05 7.25 -7.54 -0.05 -0.10 16 11 N -0.47 -9.17 6.21 -246.07 -1.53 -10.70 16 12 C 0.05 0.85 4.27 -4.98 -0.02 0.83 16 13 C -0.06 -0.96 5.46 -104.65 -0.57 -1.53 16 14 C -0.03 -0.50 9.21 -39.18 -0.36 -0.86 16 15 C -0.13 -1.65 5.87 -104.98 -0.62 -2.27 16 16 C 0.53 6.54 8.27 34.58 0.29 6.82 16 17 O -0.51 -7.91 17.13 -19.25 -0.33 -8.24 16 18 O -0.51 -4.38 12.68 -40.54 -0.51 -4.90 16 19 C -0.06 -0.60 9.61 -39.18 -0.38 -0.97 16 20 C -0.13 -1.43 9.81 -39.61 -0.39 -1.82 16 21 C 0.02 0.27 6.32 -39.37 -0.25 0.03 16 22 Cl -0.05 -0.63 27.52 -51.86 -1.43 -2.06 16 23 C 0.00 0.08 7.28 -7.54 -0.05 0.02 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.08 7.87 -51.93 -0.41 0.67 16 28 H 0.08 1.22 7.51 -51.93 -0.39 0.83 16 29 H 0.06 0.90 7.11 -51.93 -0.37 0.53 16 30 H 0.14 2.14 7.59 -52.48 -0.40 1.74 16 31 H 0.41 1.68 9.11 45.56 0.42 2.10 16 32 H 0.14 1.15 7.61 -52.49 -0.40 0.75 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 35 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -30.91 321.81 -9.56 -40.46 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.17 Total: 1.00 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.15 Total: -11.61 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.79 Total: -35.53 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -0.84 Total: -13.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.43 Total: -2.06 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.91 -9.56 -40.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.219 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds