Wall clock time and date at job start Tue Mar 31 2020 07:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00193 * 2 1 4 4 H 1.48502 * 109.47031 * 240.00139 * 3 2 1 5 5 H 1.48506 * 109.46909 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47400 * 119.99524 * 3 2 1 7 7 C 1.37878 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99908 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00094 * 0.02562 * 7 2 1 10 10 C 1.53512 * 114.17020 * 179.97438 * 9 7 2 11 11 N 1.47490 * 87.93315 * 220.13782 * 10 9 7 12 12 C 1.46896 * 110.99658 * 138.70218 * 11 10 9 13 13 C 1.50703 * 109.46860 * 170.00333 * 12 11 10 14 14 C 1.37895 * 119.93166 * 104.72402 * 13 12 11 15 15 C 1.39654 * 119.85927 * 180.27212 * 14 13 12 16 16 C 1.47661 * 120.13371 * 179.97438 * 15 14 13 17 17 O 1.21479 * 120.00325 * 0.02562 * 16 15 14 18 18 O 1.34717 * 120.00189 * 180.02562 * 16 15 14 19 19 C 1.39688 * 119.73078 * 0.02562 * 15 14 13 20 20 C 1.37855 * 119.85964 * 359.97438 * 19 15 14 21 21 C 1.38505 * 119.93104 * 284.99984 * 13 12 11 22 22 Cl 1.73603 * 119.86173 * 359.74725 * 21 13 12 23 23 C 1.47480 * 87.83309 * 27.01398 * 11 10 9 24 24 H 0.97002 * 119.99760 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.25807 * 312.94780 * 9 7 2 26 26 H 1.08996 * 113.47410 * 105.37598 * 10 9 7 27 27 H 1.08999 * 113.53421 * 334.91506 * 10 9 7 28 28 H 1.09002 * 109.47675 * 50.00662 * 12 11 10 29 29 H 1.08999 * 109.47716 * 289.99920 * 12 11 10 30 30 H 1.08004 * 120.07074 * 0.29858 * 14 13 12 31 31 H 0.96705 * 117.00566 * 180.02562 * 18 16 15 32 32 H 1.07996 * 120.06923 * 179.97438 * 19 15 14 33 33 H 1.07995 * 119.93419 * 179.97438 * 20 19 15 34 34 H 1.09000 * 113.47948 * 87.75612 * 23 11 10 35 35 H 1.09000 * 113.47531 * 218.22443 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2050 -4.3602 -0.9496 12 6 1.9206 -5.0901 -2.0046 13 6 0.9383 -5.9038 -2.8073 14 6 0.5659 -5.4855 -4.0674 15 6 -0.3487 -6.2376 -4.8076 16 6 -0.7522 -5.7950 -6.1573 17 8 -0.2880 -4.7750 -6.6262 18 8 -1.6351 -6.5223 -6.8689 19 6 -0.8812 -7.4098 -4.2656 20 6 -0.5010 -7.8174 -3.0048 21 6 0.4072 -7.0672 -2.2755 22 17 0.8806 -7.5868 -0.6882 23 6 0.8518 -2.9993 -1.3949 24 1 -0.4850 0.8401 -0.0004 25 1 0.4446 -2.5306 0.7333 26 1 2.1889 -4.2509 0.9645 27 1 3.1382 -3.5668 -0.4231 28 1 2.6575 -5.7535 -1.5518 29 1 2.4251 -4.3800 -2.6598 30 1 0.9810 -4.5783 -4.4811 31 1 -1.8684 -6.1928 -7.7476 32 1 -1.5892 -7.9954 -4.8331 33 1 -0.9122 -8.7232 -2.5844 34 1 1.4937 -2.6227 -2.1913 35 1 -0.2089 -2.8755 -1.6135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063856.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:45 Heat of formation + Delta-G solvation = -59.043773 kcal Electronic energy + Delta-G solvation = -20744.976533 eV Core-core repulsion = 17347.847166 eV Total energy + Delta-G solvation = -3397.129367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60043 -40.81149 -39.67522 -37.41272 -37.12840 -34.95144 -33.70362 -32.19353 -30.24776 -27.43449 -26.54360 -25.79963 -24.56122 -22.94156 -21.83204 -20.45476 -19.09616 -18.74119 -18.29148 -17.43843 -16.91242 -16.75026 -16.60149 -16.33175 -15.87562 -15.48422 -15.04890 -14.58591 -14.36838 -14.16201 -13.82191 -13.58765 -13.25796 -13.03308 -12.87690 -12.72490 -12.63649 -12.46482 -12.40197 -12.11890 -11.85208 -11.76997 -11.49925 -11.22915 -10.88484 -10.50313 -10.08017 -9.84254 -9.67909 -8.14874 -6.26204 -0.56490 0.14188 1.10750 1.35958 1.43057 1.44135 1.51943 1.95821 2.42251 2.52201 3.14525 3.33066 3.57375 3.65689 3.97065 3.99204 4.13990 4.24358 4.26871 4.48109 4.51394 4.59738 4.72405 4.80890 4.86334 4.97170 4.98545 5.12047 5.14896 5.23888 5.47900 5.50985 5.57035 5.62932 5.85593 6.29290 6.35508 6.83456 6.90902 7.42488 8.94691 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015069 B = 0.004371 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.640328 B = 6404.165041 C = 7865.325545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.014 3.986 11 N -0.465 5.465 12 C 0.055 3.945 13 C -0.084 4.084 14 C -0.050 4.050 15 C -0.141 4.141 16 C 0.536 3.464 17 O -0.550 6.550 18 O -0.497 6.497 19 C -0.037 4.037 20 C -0.121 4.121 21 C 0.011 3.989 22 Cl -0.050 7.050 23 C 0.018 3.982 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.435 0.565 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.050 0.950 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.405 -18.880 -10.272 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.184 4.184 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.003 3.997 10 C -0.115 4.115 11 N -0.187 5.187 12 C -0.073 4.073 13 C -0.086 4.086 14 C -0.069 4.069 15 C -0.142 4.142 16 C 0.382 3.618 17 O -0.442 6.442 18 O -0.310 6.310 19 C -0.055 4.055 20 C -0.140 4.140 21 C -0.017 4.017 22 Cl -0.021 7.021 23 C -0.112 4.112 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.298 0.702 32 H 0.196 0.804 33 H 0.190 0.810 34 H 0.068 0.932 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.797 -19.191 -9.660 21.560 hybrid contribution 0.813 2.012 -0.779 2.306 sum -0.983 -17.179 -10.439 20.126 Atomic orbital electron populations 1.70093 1.07574 1.27595 1.50844 1.25820 0.95556 1.02682 0.94328 0.85645 0.78383 0.78815 0.79033 1.19541 1.21171 1.19209 1.21357 0.93058 0.91417 1.51038 0.92107 1.20021 0.94557 0.92144 0.92946 1.23811 0.95401 0.95381 0.96888 1.68853 1.27376 1.12315 1.10110 1.21645 0.94388 0.97382 0.93915 1.19555 0.99962 0.94906 0.94139 1.21101 0.94677 0.98372 0.92715 1.19155 1.02925 0.99411 0.92724 1.20762 0.75411 0.80077 0.85563 1.90914 1.55110 1.26531 1.71669 1.84479 1.57227 1.53960 1.35380 1.21677 0.96463 0.93227 0.94163 1.21392 0.96872 1.01389 0.94298 1.21306 0.97594 0.95050 0.87701 1.98388 1.90705 1.89532 1.23474 1.23845 0.98723 0.88625 0.99972 0.92911 0.95199 0.90648 0.91764 0.88643 0.92922 0.85390 0.70228 0.80403 0.81014 0.93205 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.73 13.26 21.45 0.28 -54.45 16 2 C 0.02 0.87 5.46 84.65 0.46 1.33 16 3 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.53 -29.04 8.83 25.60 0.23 -28.82 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.02 1.14 3.76 -11.19 -0.04 1.10 16 10 C 0.01 0.56 7.25 83.57 0.61 1.16 16 11 N -0.46 -18.14 6.21 -932.43 -5.79 -23.93 16 12 C 0.05 1.76 4.27 85.56 0.37 2.12 16 13 C -0.08 -2.45 5.46 -19.88 -0.11 -2.56 16 14 C -0.05 -1.42 9.21 22.53 0.21 -1.21 16 15 C -0.14 -3.35 5.87 -20.10 -0.12 -3.47 16 16 C 0.54 12.50 8.27 70.31 0.58 13.08 16 17 O -0.55 -17.08 17.13 19.90 0.34 -16.74 16 18 O -0.50 -6.99 12.68 -56.26 -0.71 -7.71 16 19 C -0.04 -0.66 9.61 22.53 0.22 -0.44 16 20 C -0.12 -2.26 9.81 22.25 0.22 -2.04 16 21 C 0.01 0.28 6.32 22.41 0.14 0.42 16 22 Cl -0.05 -1.27 27.52 -2.72 -0.07 -1.34 16 23 C 0.02 0.83 7.28 83.58 0.61 1.44 16 24 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 25 H 0.03 1.71 8.11 -2.38 -0.02 1.69 16 26 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.06 2.50 7.87 -2.39 -0.02 2.48 16 28 H 0.10 2.77 7.51 -2.39 -0.02 2.75 16 29 H 0.05 1.72 7.11 -2.39 -0.02 1.70 16 30 H 0.13 3.99 7.59 -2.91 -0.02 3.97 16 31 H 0.44 2.27 9.11 -74.05 -0.67 1.60 16 32 H 0.18 1.94 7.61 -2.91 -0.02 1.92 16 33 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 34 H 0.05 2.33 7.38 -2.39 -0.02 2.32 16 35 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.19 321.81 -0.11 -68.30 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.46 Total: 8.21 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 3.36 Total: -17.88 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -5.51 Total: -78.38 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.37 Total: -24.45 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -68.19 -0.11 -68.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063856.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.254 kcal (2) G-P(sol) polarization free energy of solvation -68.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds