Wall clock time and date at job start Tue Mar 31 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46795 * 164.35106 * 3 2 1 5 5 N 1.46903 * 109.46873 * 179.40230 * 4 3 2 6 6 C 1.46895 * 110.99949 * 287.95748 * 5 4 3 7 7 C 1.50704 * 109.47067 * 160.35930 * 6 5 4 8 8 H 1.07994 * 119.99715 * 4.66693 * 7 6 5 9 9 C 1.37874 * 119.99962 * 184.66845 * 7 6 5 10 10 N 1.31513 * 120.00432 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99795 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47191 * 89.99994 * 11 9 7 13 13 H 1.48496 * 109.47060 * 210.00009 * 11 9 7 14 14 H 1.48502 * 109.47137 * 329.99827 * 11 9 7 15 15 C 1.46908 * 110.99668 * 164.00758 * 5 4 3 16 16 C 1.50696 * 109.46846 * 293.95198 * 15 5 4 17 17 N 1.28622 * 124.70509 * 90.00871 * 16 15 5 18 18 C 1.33614 * 115.76721 * 179.97438 * 17 16 15 19 19 C 1.47111 * 123.15308 * 179.97438 * 18 17 16 20 20 O 1.21558 * 119.99629 * 179.97438 * 19 18 17 21 21 O 1.34796 * 120.00073 * 359.97438 * 19 18 17 22 22 C 1.35290 * 113.68397 * 0.26089 * 18 17 16 23 23 S 1.70768 * 124.71161 * 269.97511 * 16 15 5 24 24 H 1.09004 * 109.47228 * 44.35542 * 3 2 1 25 25 H 1.09000 * 109.47243 * 284.34793 * 3 2 1 26 26 H 1.09008 * 109.47139 * 59.40281 * 4 3 2 27 27 H 1.09001 * 109.47271 * 299.40273 * 4 3 2 28 28 H 1.09006 * 109.47582 * 280.36144 * 6 5 4 29 29 H 1.09003 * 109.47349 * 40.35952 * 6 5 4 30 30 H 0.97004 * 120.00442 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.46896 * 173.95348 * 15 5 4 32 32 H 1.09006 * 109.47059 * 53.95707 * 15 5 4 33 33 H 0.96698 * 116.99645 * 180.02562 * 21 19 18 34 34 H 1.08004 * 125.58278 * 179.73701 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3900 -0.3891 5 7 4.5862 1.3946 -0.3752 6 6 5.0998 1.3457 1.0002 7 6 6.5308 0.8733 0.9855 8 1 7.0345 0.7057 0.0451 9 6 7.1969 0.6551 2.1728 10 7 6.5838 0.8597 3.3181 11 14 8.9710 0.0703 2.1546 12 1 9.8794 1.2450 2.1482 13 1 9.2335 -0.7519 3.3630 14 1 9.2102 -0.7472 0.9382 15 6 5.1158 2.5614 -1.0938 16 6 4.7714 2.4492 -2.5566 17 7 3.6987 2.9126 -3.0940 18 6 3.5751 2.7131 -4.4094 19 6 2.4147 3.1740 -5.1874 20 8 2.3617 2.9616 -6.3831 21 8 1.4105 3.8318 -4.5744 22 6 4.6142 2.0421 -4.9573 23 16 5.7516 1.6899 -3.7309 24 1 2.9717 -0.7340 -0.7185 25 1 2.9715 -0.2538 0.9956 26 1 2.7448 2.1262 0.3233 27 1 2.7626 1.6401 -1.3890 28 1 5.0502 2.3409 1.4422 29 1 4.4955 0.6559 1.5894 30 1 7.0525 0.7066 4.1535 31 1 6.1989 2.5989 -0.9773 32 1 4.6747 3.4706 -0.6852 33 1 0.6692 4.1146 -5.1272 34 1 4.7104 1.7748 -5.9993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:39 Heat of formation + Delta-G solvation = -13.699060 kcal Electronic energy + Delta-G solvation = -20641.907377 eV Core-core repulsion = 17281.080762 eV Total energy + Delta-G solvation = -3360.826615 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70402 -39.24422 -37.45297 -36.23915 -36.06783 -32.81694 -31.94573 -30.45632 -27.79744 -26.52534 -25.66329 -23.22921 -22.08158 -20.38277 -19.91636 -19.03163 -17.62139 -17.24022 -16.62878 -16.34628 -15.99683 -15.34790 -14.97776 -14.69827 -14.47432 -14.30831 -13.64827 -13.47500 -13.33710 -12.77895 -12.60073 -12.13971 -12.13036 -11.93986 -11.70059 -11.56283 -11.47410 -11.08312 -10.95928 -10.92347 -10.77457 -10.45802 -10.03933 -9.72289 -9.69356 -9.38992 -8.99730 -8.55221 -7.62623 -6.15042 -4.17862 0.37830 1.19941 1.60464 1.67918 2.95944 2.98024 3.04207 3.05870 3.24564 3.32806 3.34742 4.03449 4.17357 4.35505 4.83986 4.97738 5.08158 5.22242 5.25488 5.38410 5.49157 5.62046 5.87212 5.91288 6.09996 6.20330 6.23677 6.30153 6.89874 7.10948 7.37445 7.61375 7.77055 7.80676 7.82652 7.95593 8.29170 8.88582 9.47625 10.95100 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.004778 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.574205 B = 5859.134924 C = 7330.805306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.220 3.780 3 C -0.026 4.026 4 C 0.054 3.946 5 N -0.528 5.528 6 C 0.189 3.811 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.272 1.272 15 C 0.134 3.866 16 C 0.049 3.951 17 N -0.432 5.432 18 C 0.017 3.983 19 C 0.568 3.432 20 O -0.516 6.516 21 O -0.493 6.493 22 C -0.240 4.240 23 S 0.268 5.732 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.039 0.961 27 H 0.078 0.922 28 H -0.003 1.003 29 H 0.044 0.956 30 H 0.263 0.737 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.411 0.589 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 2.854 -13.286 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.098 4.098 3 C -0.067 4.067 4 C -0.076 4.076 5 N -0.254 5.254 6 C 0.065 3.935 7 C -0.551 4.551 8 H 0.083 0.917 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.197 1.197 15 C 0.003 3.997 16 C -0.232 4.232 17 N -0.148 5.148 18 C -0.118 4.118 19 C 0.410 3.590 20 O -0.405 6.405 21 O -0.303 6.303 22 C -0.383 4.383 23 S 0.527 5.473 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.015 0.985 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.080 0.920 33 H 0.269 0.731 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.439 2.014 -13.007 13.386 hybrid contribution -0.238 0.863 -0.377 0.971 sum -2.677 2.877 -13.384 13.949 Atomic orbital electron populations 1.81147 1.13238 1.09189 1.09958 1.29410 0.95462 0.92600 0.92329 1.19359 0.80205 1.00691 1.06399 1.21997 0.90064 0.93899 1.01631 1.62119 1.04742 1.38039 1.20459 1.19911 0.96156 0.96550 0.80911 1.21090 0.96280 1.45094 0.92594 0.91705 1.24956 0.98353 0.95520 0.95439 1.69934 1.37113 1.48962 0.97407 0.86540 0.84694 0.78772 0.77687 1.20733 1.21310 1.19654 1.20671 1.02294 0.94056 0.82700 1.27485 0.93269 0.99392 1.03010 1.67093 1.20241 1.19769 1.07683 1.19127 0.96046 1.06563 0.90035 1.19625 0.81101 0.73896 0.84406 1.90920 1.79158 1.54962 1.15480 1.84726 1.31325 1.68544 1.45699 1.26728 0.99354 1.04714 1.07483 1.83199 1.20061 1.48945 0.95109 0.86964 0.86436 0.94304 0.90392 0.98472 0.93853 0.92743 0.87074 0.92019 0.73064 0.79510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.01 18.54 42.15 0.78 -7.23 16 2 C 0.22 3.37 15.43 -20.76 -0.32 3.05 16 3 C -0.03 -0.36 5.78 -29.52 -0.17 -0.53 16 4 C 0.05 0.84 4.78 -3.82 -0.02 0.82 16 5 N -0.53 -9.06 4.37 -237.50 -1.04 -10.10 16 6 C 0.19 4.04 4.59 -4.98 -0.02 4.01 16 7 C -0.51 -12.16 8.61 -34.44 -0.30 -12.46 16 8 H 0.06 1.49 7.66 -52.49 -0.40 1.09 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -23.97 13.29 55.43 0.74 -23.24 16 11 Si 0.90 19.45 29.54 -169.99 -5.02 14.43 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 C 0.13 2.08 5.36 -4.97 -0.03 2.05 16 16 C 0.05 0.68 6.05 -13.62 -0.08 0.60 16 17 N -0.43 -6.44 9.40 -8.53 -0.08 -6.52 16 18 C 0.02 0.24 6.71 -84.54 -0.57 -0.33 16 19 C 0.57 7.61 8.31 34.33 0.29 7.90 16 20 O -0.52 -7.55 17.50 -19.31 -0.34 -7.89 16 21 O -0.49 -5.65 13.37 -40.75 -0.54 -6.19 16 22 C -0.24 -2.76 10.62 29.68 0.32 -2.44 16 23 S 0.27 3.01 22.92 -107.50 -2.46 0.55 16 24 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 25 H 0.12 1.69 6.52 -51.93 -0.34 1.35 16 26 H 0.04 0.63 8.05 -51.92 -0.42 0.21 16 27 H 0.08 1.22 6.03 -51.93 -0.31 0.91 16 28 H 0.00 -0.06 8.00 -51.93 -0.42 -0.47 16 29 H 0.04 0.98 6.24 -51.93 -0.32 0.65 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.11 1.74 7.32 -51.93 -0.38 1.36 16 32 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 33 H 0.41 2.49 9.11 45.56 0.42 2.90 16 34 H 0.19 1.77 8.03 -52.48 -0.42 1.35 16 LS Contribution 323.49 15.07 4.87 4.87 Total: -1.00 -30.30 323.49 -6.67 -36.97 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -2.58 Total: 0.29 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.00 Total: 4.06 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.40 Total: -47.09 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.88 Total: -14.08 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -2.46 Total: 0.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.30 -6.67 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds