Wall clock time and date at job start Tue Mar 31 2020 07:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46795 * 164.35106 * 3 2 1 5 5 N 1.46903 * 109.46873 * 179.40230 * 4 3 2 6 6 C 1.46895 * 110.99949 * 287.95748 * 5 4 3 7 7 C 1.50704 * 109.47067 * 160.35930 * 6 5 4 8 8 H 1.07994 * 119.99715 * 4.66693 * 7 6 5 9 9 C 1.37874 * 119.99962 * 184.66845 * 7 6 5 10 10 N 1.31513 * 120.00432 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99795 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47191 * 89.99994 * 11 9 7 13 13 H 1.48496 * 109.47060 * 210.00009 * 11 9 7 14 14 H 1.48502 * 109.47137 * 329.99827 * 11 9 7 15 15 C 1.46908 * 110.99668 * 164.00758 * 5 4 3 16 16 C 1.50696 * 109.46846 * 293.95198 * 15 5 4 17 17 N 1.28622 * 124.70509 * 90.00871 * 16 15 5 18 18 C 1.33614 * 115.76721 * 179.97438 * 17 16 15 19 19 C 1.47111 * 123.15308 * 179.97438 * 18 17 16 20 20 O 1.21558 * 119.99629 * 179.97438 * 19 18 17 21 21 O 1.34796 * 120.00073 * 359.97438 * 19 18 17 22 22 C 1.35290 * 113.68397 * 0.26089 * 18 17 16 23 23 S 1.70768 * 124.71161 * 269.97511 * 16 15 5 24 24 H 1.09004 * 109.47228 * 44.35542 * 3 2 1 25 25 H 1.09000 * 109.47243 * 284.34793 * 3 2 1 26 26 H 1.09008 * 109.47139 * 59.40281 * 4 3 2 27 27 H 1.09001 * 109.47271 * 299.40273 * 4 3 2 28 28 H 1.09006 * 109.47582 * 280.36144 * 6 5 4 29 29 H 1.09003 * 109.47349 * 40.35952 * 6 5 4 30 30 H 0.97004 * 120.00442 * 180.02562 * 10 9 7 31 31 H 1.09001 * 109.46896 * 173.95348 * 15 5 4 32 32 H 1.09006 * 109.47059 * 53.95707 * 15 5 4 33 33 H 0.96698 * 116.99645 * 180.02562 * 21 19 18 34 34 H 1.08004 * 125.58278 * 179.73701 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.3900 -0.3891 5 7 4.5862 1.3946 -0.3752 6 6 5.0998 1.3457 1.0002 7 6 6.5308 0.8733 0.9855 8 1 7.0345 0.7057 0.0451 9 6 7.1969 0.6551 2.1728 10 7 6.5838 0.8597 3.3181 11 14 8.9710 0.0703 2.1546 12 1 9.8794 1.2450 2.1482 13 1 9.2335 -0.7519 3.3630 14 1 9.2102 -0.7472 0.9382 15 6 5.1158 2.5614 -1.0938 16 6 4.7714 2.4492 -2.5566 17 7 3.6987 2.9126 -3.0940 18 6 3.5751 2.7131 -4.4094 19 6 2.4147 3.1740 -5.1874 20 8 2.3617 2.9616 -6.3831 21 8 1.4105 3.8318 -4.5744 22 6 4.6142 2.0421 -4.9573 23 16 5.7516 1.6899 -3.7309 24 1 2.9717 -0.7340 -0.7185 25 1 2.9715 -0.2538 0.9956 26 1 2.7448 2.1262 0.3233 27 1 2.7626 1.6401 -1.3890 28 1 5.0502 2.3409 1.4422 29 1 4.4955 0.6559 1.5894 30 1 7.0525 0.7066 4.1535 31 1 6.1989 2.5989 -0.9773 32 1 4.6747 3.4706 -0.6852 33 1 0.6692 4.1146 -5.1272 34 1 4.7104 1.7748 -5.9993 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067357.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:39 Heat of formation + Delta-G solvation = -34.733198 kcal Electronic energy + Delta-G solvation = -20642.819486 eV Core-core repulsion = 17281.080762 eV Total energy + Delta-G solvation = -3361.738724 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.69942 -40.28965 -38.77974 -37.43609 -37.17445 -34.64425 -33.10316 -31.72984 -29.26937 -27.78166 -26.81617 -24.82392 -23.26279 -21.71495 -20.94444 -20.04528 -18.69539 -18.47334 -18.33999 -17.30097 -17.09415 -16.76754 -16.14035 -16.09181 -15.83552 -15.64275 -14.81472 -14.61229 -14.48438 -14.21915 -13.90142 -13.72643 -13.41166 -13.14548 -12.98710 -12.83084 -12.65723 -12.54362 -12.45396 -12.33236 -12.00128 -11.97530 -11.55634 -11.20470 -10.78770 -10.64208 -10.44771 -9.98439 -9.10001 -8.05420 -6.12808 -0.58131 0.25886 0.60234 0.65820 1.54235 1.57197 1.65783 1.71343 1.78570 2.02696 2.09838 2.52916 2.88682 3.04386 3.30257 3.64065 3.86163 4.13284 4.18254 4.25348 4.31895 4.45387 4.64987 4.73988 4.89150 4.97768 5.08112 5.30091 5.37213 5.39218 5.80421 6.15277 6.28336 6.40531 6.54627 6.60646 6.93860 7.02329 7.56604 9.04733 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.004778 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.574205 B = 5859.134924 C = 7330.805306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.241 3.759 3 C -0.016 4.016 4 C 0.059 3.941 5 N -0.522 5.522 6 C 0.201 3.799 7 C -0.510 4.510 8 H 0.074 0.926 9 C 0.008 3.992 10 N -0.934 5.934 11 Si 0.955 3.045 12 H -0.279 1.279 13 H -0.295 1.295 14 H -0.259 1.259 15 C 0.137 3.863 16 C 0.020 3.980 17 N -0.449 5.449 18 C -0.011 4.011 19 C 0.571 3.429 20 O -0.534 6.534 21 O -0.498 6.498 22 C -0.226 4.226 23 S 0.334 5.666 24 H 0.135 0.865 25 H 0.116 0.884 26 H 0.028 0.972 27 H 0.081 0.919 28 H -0.029 1.029 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.432 0.568 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 2.120 -15.115 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.075 4.075 3 C -0.057 4.057 4 C -0.071 4.071 5 N -0.247 5.247 6 C 0.076 3.924 7 C -0.549 4.549 8 H 0.092 0.908 9 C -0.190 4.190 10 N -0.575 5.575 11 Si 0.781 3.219 12 H -0.205 1.205 13 H -0.221 1.221 14 H -0.183 1.183 15 C 0.006 3.994 16 C -0.259 4.259 17 N -0.165 5.165 18 C -0.146 4.146 19 C 0.414 3.586 20 O -0.426 6.426 21 O -0.311 6.311 22 C -0.369 4.369 23 S 0.592 5.408 24 H 0.153 0.847 25 H 0.133 0.867 26 H 0.047 0.953 27 H 0.100 0.900 28 H -0.011 1.011 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.294 0.706 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -1.368 1.296 -14.861 14.980 hybrid contribution -0.586 1.133 0.113 1.280 sum -1.954 2.429 -14.748 15.074 Atomic orbital electron populations 1.81169 1.14333 1.10417 1.11280 1.29522 0.95426 0.91445 0.91143 1.19350 0.79151 1.00280 1.06873 1.21956 0.88985 0.94583 1.01544 1.62020 1.05645 1.39103 1.17969 1.19593 0.95370 0.94542 0.82914 1.21463 0.97237 1.43506 0.92671 0.90823 1.25713 1.01983 0.96040 0.95272 1.70061 1.38657 1.50855 0.97936 0.85594 0.80380 0.78254 0.77666 1.20509 1.22091 1.18261 1.20543 1.01946 0.92999 0.83903 1.27103 0.94539 1.01448 1.02806 1.67019 1.20949 1.20011 1.08563 1.19283 0.97172 1.08261 0.89867 1.19614 0.81296 0.73642 0.84096 1.90906 1.79659 1.55948 1.16042 1.84686 1.31883 1.68085 1.46399 1.27086 0.98407 1.02669 1.08695 1.82960 1.18063 1.46693 0.93063 0.84695 0.86656 0.95324 0.90027 1.01113 0.95104 0.93088 0.87291 0.92879 0.70628 0.77309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.02 18.54 20.01 0.37 -16.65 16 2 C 0.24 7.19 15.43 89.44 1.38 8.57 16 3 C -0.02 -0.43 5.78 28.79 0.17 -0.27 16 4 C 0.06 1.80 4.78 86.30 0.41 2.21 16 5 N -0.52 -17.56 4.37 -905.31 -3.96 -21.52 16 6 C 0.20 8.64 4.59 85.56 0.39 9.03 16 7 C -0.51 -23.87 8.61 25.60 0.22 -23.65 16 8 H 0.07 3.25 7.66 -2.91 -0.02 3.23 16 9 C 0.01 0.40 5.46 84.65 0.46 0.86 16 10 N -0.93 -50.58 13.29 21.45 0.28 -50.30 16 11 Si 0.95 39.27 29.54 68.60 2.03 41.29 16 12 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 13 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 14 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 15 C 0.14 4.16 5.36 85.55 0.46 4.62 16 16 C 0.02 0.54 6.05 88.58 0.54 1.08 16 17 N -0.45 -12.82 9.40 -180.90 -1.70 -14.52 16 18 C -0.01 -0.29 6.71 40.52 0.27 -0.02 16 19 C 0.57 14.52 8.31 70.15 0.58 15.11 16 20 O -0.53 -14.86 17.50 19.65 0.34 -14.51 16 21 O -0.50 -10.82 13.37 -57.08 -0.76 -11.59 16 22 C -0.23 -4.55 10.62 67.14 0.71 -3.84 16 23 S 0.33 6.53 22.92 -56.49 -1.29 5.23 16 24 H 0.14 3.04 8.14 -2.39 -0.02 3.02 16 25 H 0.12 3.23 6.52 -2.39 -0.02 3.21 16 26 H 0.03 0.93 8.05 -2.38 -0.02 0.91 16 27 H 0.08 2.47 6.03 -2.39 -0.01 2.46 16 28 H -0.03 -1.38 8.00 -2.38 -0.02 -1.40 16 29 H 0.03 1.41 6.24 -2.39 -0.01 1.39 16 30 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 31 H 0.11 3.31 7.32 -2.39 -0.02 3.30 16 32 H 0.05 1.69 8.12 -2.38 -0.02 1.67 16 33 H 0.43 4.66 9.11 -74.06 -0.67 3.98 16 34 H 0.21 3.22 8.03 -2.91 -0.02 3.20 16 Total: -1.00 -64.06 323.49 1.40 -62.66 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.49 Total: 6.20 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 5.60 Total: 13.70 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -5.00 Total: -102.99 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.42 Total: -26.10 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.29 Total: 5.23 kcal Total: -64.06 1.40 -62.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067357.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.926 kcal (2) G-P(sol) polarization free energy of solvation -64.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds