Wall clock time and date at job start Tue Mar 31 2020 07:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00366 * 2 1 4 4 H 1.48501 * 109.47244 * 240.00471 * 3 2 1 5 5 H 1.48504 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47342 * 120.00194 * 3 2 1 7 7 C 1.38950 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00377 * 158.06266 * 7 2 1 9 9 N 1.37103 * 119.99763 * 338.06382 * 7 2 1 10 10 C 1.46492 * 120.00318 * 325.74572 * 9 7 2 11 11 C 1.52994 * 109.47301 * 264.26101 * 10 9 7 12 12 C 1.50706 * 109.47379 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99414 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00150 * 179.97438 * 12 11 10 15 15 C 1.34775 * 119.99649 * 145.47154 * 9 7 2 16 16 O 1.21298 * 119.99971 * 179.97438 * 15 9 7 17 17 C 1.50704 * 120.00415 * 0.02562 * 15 9 7 18 18 H 1.09000 * 115.55050 * 34.32490 * 17 15 9 19 19 C 1.53005 * 117.49548 * 248.62193 * 17 15 9 20 20 C 1.52998 * 117.49968 * 180.02562 * 17 15 9 21 21 H 1.09002 * 117.49983 * 359.97438 * 20 17 15 22 22 C 1.53000 * 117.49457 * 215.00171 * 20 17 15 23 23 F 1.39901 * 109.47678 * 59.99870 * 22 20 17 24 24 F 1.39902 * 109.47074 * 179.97438 * 22 20 17 25 25 F 1.39900 * 109.47313 * 299.99441 * 22 20 17 26 26 H 0.97002 * 119.99735 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46752 * 24.25677 * 10 9 7 28 28 H 1.09002 * 109.47255 * 144.25371 * 10 9 7 29 29 H 1.08998 * 109.47316 * 299.99402 * 11 10 9 30 30 H 1.09001 * 109.47159 * 59.99805 * 11 10 9 31 31 H 0.96698 * 116.99682 * 180.02562 * 14 12 11 32 32 H 1.08998 * 117.50145 * 0.02562 * 19 17 15 33 33 H 1.08998 * 117.49497 * 145.02069 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0301 -1.2372 -0.3499 9 7 1.3977 -2.3479 0.4425 10 6 0.4270 -2.2831 1.5378 11 6 1.1280 -2.6007 2.8600 12 6 0.1295 -2.5334 3.9869 13 8 -1.0245 -2.2599 3.7558 14 8 0.5220 -2.7782 5.2469 15 6 1.6858 -3.5319 -0.1333 16 8 1.1455 -4.5445 0.2589 17 6 2.6802 -3.5979 -1.2638 18 1 3.5094 -2.8930 -1.2024 19 6 2.1456 -3.9408 -2.6558 20 6 2.9639 -4.9711 -1.8758 21 1 2.4317 -5.8269 -1.4606 22 6 4.3901 -5.2501 -2.3544 23 9 5.2746 -5.1360 -1.2765 24 9 4.4608 -6.5448 -2.8799 25 9 4.7393 -4.3251 -3.3441 26 1 -0.4850 0.8401 0.0004 27 1 -0.0012 -1.2818 1.5849 28 1 -0.3666 -3.0097 1.3634 29 1 1.5561 -3.6019 2.8130 30 1 1.9215 -1.8740 3.0343 31 1 -0.1544 -2.7235 5.9358 32 1 1.0746 -4.1182 -2.7540 33 1 2.6230 -3.4614 -3.5104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:07 Heat of formation + Delta-G solvation = -254.494086 kcal Electronic energy + Delta-G solvation = -24251.187680 eV Core-core repulsion = 19863.017047 eV Total energy + Delta-G solvation = -4388.170633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.89684 -47.44433 -47.36765 -39.89504 -39.11048 -36.47963 -35.75088 -34.86074 -32.05153 -30.73032 -26.97852 -25.36451 -24.80030 -22.53759 -21.41900 -20.40939 -19.27354 -18.44927 -18.15175 -17.81600 -17.44961 -16.87071 -16.12716 -15.88433 -15.45954 -14.73021 -14.54991 -14.28030 -14.22669 -14.02218 -13.83611 -13.58517 -13.55656 -13.32184 -13.03630 -12.77081 -12.57309 -12.10427 -11.71408 -11.42613 -11.34531 -11.22306 -11.14921 -10.82308 -10.52210 -10.49247 -10.28962 -10.14520 -10.04479 -9.28743 -8.72275 -7.77585 -6.52834 -4.22878 2.62715 2.90247 3.02562 3.14240 3.15066 3.21536 3.45167 3.77641 3.94557 4.04537 4.22191 4.67437 4.70827 4.82865 5.03856 5.23980 5.46335 5.57130 5.72907 5.82447 5.93174 6.09059 6.16696 6.27284 6.36056 6.74527 6.80464 7.20443 7.33100 7.67611 8.16951 8.26652 8.89579 9.26448 9.68820 10.48702 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.005454 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.028060 B = 5132.508246 C = 6465.569715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.426 5.426 10 C 0.127 3.873 11 C -0.127 4.127 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.524 6.524 15 C 0.495 3.505 16 O -0.600 6.600 17 C -0.116 4.116 18 H 0.129 0.871 19 C -0.119 4.119 20 C -0.219 4.219 21 H 0.153 0.847 22 C 0.485 3.515 23 F -0.181 7.181 24 F -0.184 7.184 25 F -0.183 7.183 26 H 0.274 0.726 27 H 0.120 0.880 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.402 0.598 32 H 0.113 0.887 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.641 -3.996 -0.090 6.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.161 4.161 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.479 4.479 8 H 0.113 0.887 9 N -0.142 5.142 10 C 0.003 3.997 11 C -0.165 4.165 12 C 0.326 3.674 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.283 3.717 16 O -0.486 6.486 17 C -0.137 4.137 18 H 0.147 0.853 19 C -0.157 4.157 20 C -0.238 4.238 21 H 0.170 0.830 22 C 0.431 3.569 23 F -0.162 7.162 24 F -0.165 7.165 25 F -0.165 7.165 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.084 0.916 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.259 0.741 32 H 0.131 0.869 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.204 -4.260 -0.277 6.731 hybrid contribution 0.283 0.902 0.430 1.039 sum 5.487 -3.357 0.154 6.435 Atomic orbital electron populations 1.69920 1.06264 1.28402 1.43844 1.25371 0.95083 1.00033 0.95609 0.86202 0.79432 0.81028 0.79337 1.19495 1.20786 1.19644 1.19417 0.97192 0.85071 1.46250 0.88739 1.43314 1.37729 1.05655 1.27491 1.21235 0.90582 1.05890 0.81993 1.21857 0.97796 1.05193 0.91689 1.23739 0.89034 0.71755 0.82895 1.90708 1.20849 1.44291 1.84306 1.84588 1.46886 1.83536 1.18562 1.19309 0.84551 0.84385 0.83445 1.90557 1.56254 1.35350 1.66470 1.22132 1.02125 0.94081 0.95320 0.85346 1.23021 1.00655 0.97533 0.94469 1.23420 0.91859 0.98925 1.09643 0.82967 1.19629 0.88685 0.73648 0.74894 1.93187 1.71708 1.95686 1.55639 1.93158 1.96985 1.39210 1.87176 1.93148 1.93462 1.66518 1.63367 0.91563 0.86245 0.91638 0.88242 0.87732 0.74080 0.86909 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.39 11.34 55.50 0.63 -20.76 16 2 C 0.05 1.10 4.92 -17.47 -0.09 1.01 16 3 Si 0.91 18.28 29.61 -169.99 -5.03 13.25 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.35 -8.18 8.72 -14.93 -0.13 -8.31 16 8 H 0.10 2.07 6.52 -52.49 -0.34 1.72 16 9 N -0.43 -9.90 2.56 -114.82 -0.29 -10.19 16 10 C 0.13 2.91 4.18 -4.05 -0.02 2.89 16 11 C -0.13 -2.41 6.10 -27.88 -0.17 -2.58 16 12 C 0.48 8.66 8.33 36.01 0.30 8.96 16 13 O -0.51 -10.72 16.74 -18.75 -0.31 -11.04 16 14 O -0.52 -7.31 13.42 -39.25 -0.53 -7.83 16 15 C 0.49 11.07 7.38 -10.98 -0.08 10.99 16 16 O -0.60 -14.57 15.93 5.54 0.09 -14.48 16 17 C -0.12 -2.13 4.95 -91.77 -0.45 -2.58 16 18 H 0.13 2.28 6.75 -51.93 -0.35 1.93 16 19 C -0.12 -1.87 9.62 -26.75 -0.26 -2.13 16 20 C -0.22 -3.47 5.40 -90.64 -0.49 -3.96 16 21 H 0.15 2.49 7.67 -51.93 -0.40 2.09 16 22 C 0.49 7.16 3.36 37.16 0.12 7.28 16 23 F -0.18 -2.82 17.27 2.25 0.04 -2.78 16 24 F -0.18 -2.63 17.32 2.25 0.04 -2.59 16 25 F -0.18 -2.65 15.90 2.25 0.04 -2.62 16 26 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 27 H 0.12 2.98 5.33 -51.93 -0.28 2.70 16 28 H 0.07 1.61 7.55 -51.93 -0.39 1.22 16 29 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 31 H 0.40 3.65 9.10 45.56 0.41 4.07 16 32 H 0.11 1.80 8.14 -51.93 -0.42 1.37 16 33 H 0.11 1.54 7.22 -51.93 -0.37 1.17 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -28.55 307.23 -4.09 -32.64 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.12 Total: 10.21 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -1.26 Total: 11.58 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.34 Total: -30.95 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.75 Total: -33.36 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.55 -4.09 -32.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -221.858 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds