Wall clock time and date at job start Tue Mar 31 2020 07:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86792 * 120.00366 * 2 1 4 4 H 1.48501 * 109.47244 * 240.00471 * 3 2 1 5 5 H 1.48504 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47342 * 120.00194 * 3 2 1 7 7 C 1.38950 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00377 * 158.06266 * 7 2 1 9 9 N 1.37103 * 119.99763 * 338.06382 * 7 2 1 10 10 C 1.46492 * 120.00318 * 325.74572 * 9 7 2 11 11 C 1.52994 * 109.47301 * 264.26101 * 10 9 7 12 12 C 1.50706 * 109.47379 * 179.97438 * 11 10 9 13 13 O 1.20828 * 119.99414 * 0.02562 * 12 11 10 14 14 O 1.34226 * 120.00150 * 179.97438 * 12 11 10 15 15 C 1.34775 * 119.99649 * 145.47154 * 9 7 2 16 16 O 1.21298 * 119.99971 * 179.97438 * 15 9 7 17 17 C 1.50704 * 120.00415 * 0.02562 * 15 9 7 18 18 H 1.09000 * 115.55050 * 34.32490 * 17 15 9 19 19 C 1.53005 * 117.49548 * 248.62193 * 17 15 9 20 20 C 1.52998 * 117.49968 * 180.02562 * 17 15 9 21 21 H 1.09002 * 117.49983 * 359.97438 * 20 17 15 22 22 C 1.53000 * 117.49457 * 215.00171 * 20 17 15 23 23 F 1.39901 * 109.47678 * 59.99870 * 22 20 17 24 24 F 1.39902 * 109.47074 * 179.97438 * 22 20 17 25 25 F 1.39900 * 109.47313 * 299.99441 * 22 20 17 26 26 H 0.97002 * 119.99735 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46752 * 24.25677 * 10 9 7 28 28 H 1.09002 * 109.47255 * 144.25371 * 10 9 7 29 29 H 1.08998 * 109.47316 * 299.99402 * 11 10 9 30 30 H 1.09001 * 109.47159 * 59.99805 * 11 10 9 31 31 H 0.96698 * 116.99682 * 180.02562 * 14 12 11 32 32 H 1.08998 * 117.50145 * 0.02562 * 19 17 15 33 33 H 1.08998 * 117.49497 * 145.02069 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0301 -1.2372 -0.3499 9 7 1.3977 -2.3479 0.4425 10 6 0.4270 -2.2831 1.5378 11 6 1.1280 -2.6007 2.8600 12 6 0.1295 -2.5334 3.9869 13 8 -1.0245 -2.2599 3.7558 14 8 0.5220 -2.7782 5.2469 15 6 1.6858 -3.5319 -0.1333 16 8 1.1455 -4.5445 0.2589 17 6 2.6802 -3.5979 -1.2638 18 1 3.5094 -2.8930 -1.2024 19 6 2.1456 -3.9408 -2.6558 20 6 2.9639 -4.9711 -1.8758 21 1 2.4317 -5.8269 -1.4606 22 6 4.3901 -5.2501 -2.3544 23 9 5.2746 -5.1360 -1.2765 24 9 4.4608 -6.5448 -2.8799 25 9 4.7393 -4.3251 -3.3441 26 1 -0.4850 0.8401 0.0004 27 1 -0.0012 -1.2818 1.5849 28 1 -0.3666 -3.0097 1.3634 29 1 1.5561 -3.6019 2.8130 30 1 1.9215 -1.8740 3.0343 31 1 -0.1544 -2.7235 5.9358 32 1 1.0746 -4.1182 -2.7540 33 1 2.6230 -3.4614 -3.5104 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070814.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:07 Heat of formation + Delta-G solvation = -271.640554 kcal Electronic energy + Delta-G solvation = -24251.931207 eV Core-core repulsion = 19863.017047 eV Total energy + Delta-G solvation = -4388.914160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.08243 -48.60707 -48.56757 -41.38227 -40.72719 -37.96817 -37.12011 -36.60957 -33.82223 -32.41269 -28.28569 -27.11583 -26.39221 -24.02859 -22.67605 -21.89429 -20.99375 -19.75164 -19.37635 -19.21366 -18.75613 -18.41032 -17.63536 -17.52217 -16.96153 -16.32340 -16.20135 -15.66198 -15.50351 -15.45268 -15.01255 -14.90948 -14.75892 -14.73668 -14.44603 -14.35357 -14.04940 -13.63604 -13.38061 -13.00777 -12.82651 -12.65331 -12.56674 -12.51359 -12.11937 -12.02213 -11.77058 -11.66276 -11.54417 -11.05001 -10.49452 -9.59757 -8.31630 -6.07000 1.18102 1.43586 1.52512 1.60285 1.64864 1.73508 2.03001 2.28437 2.42358 2.67759 2.97475 3.03554 3.20898 3.45563 3.68257 3.87013 3.99908 4.08367 4.16016 4.32672 4.50386 4.66228 4.73294 4.88416 4.92070 5.01716 5.35020 5.50099 5.58867 5.90304 6.36532 6.99484 7.09571 7.49437 7.91579 8.70645 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.013497 B = 0.005454 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.028060 B = 5132.508246 C = 6465.569715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.006 3.994 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.358 4.358 8 H 0.109 0.891 9 N -0.437 5.437 10 C 0.131 3.869 11 C -0.118 4.118 12 C 0.495 3.505 13 O -0.549 6.549 14 O -0.507 6.507 15 C 0.486 3.514 16 O -0.627 6.627 17 C -0.136 4.136 18 H 0.137 0.863 19 C -0.105 4.105 20 C -0.204 4.204 21 H 0.147 0.853 22 C 0.496 3.504 23 F -0.185 7.185 24 F -0.179 7.179 25 F -0.178 7.178 26 H 0.272 0.728 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.427 0.573 32 H 0.108 0.892 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -3.710 -0.251 8.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.198 4.198 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.485 4.485 8 H 0.127 0.873 9 N -0.154 5.154 10 C 0.007 3.993 11 C -0.157 4.157 12 C 0.339 3.661 13 O -0.440 6.440 14 O -0.321 6.321 15 C 0.276 3.724 16 O -0.516 6.516 17 C -0.157 4.157 18 H 0.155 0.845 19 C -0.142 4.142 20 C -0.223 4.223 21 H 0.165 0.835 22 C 0.442 3.558 23 F -0.166 7.166 24 F -0.160 7.160 25 F -0.159 7.159 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.289 0.711 32 H 0.126 0.874 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.016 -3.987 -0.412 8.080 hybrid contribution -0.304 0.734 0.526 0.952 sum 6.712 -3.254 0.113 7.459 Atomic orbital electron populations 1.70045 1.07903 1.28943 1.45502 1.26175 0.95538 1.02955 0.95095 0.85210 0.78035 0.76794 0.79784 1.18369 1.21567 1.18952 1.19785 0.97718 0.85063 1.45909 0.87311 1.43534 1.37689 1.06216 1.27923 1.21004 0.90539 1.03656 0.84141 1.21628 0.97907 1.05624 0.90541 1.23353 0.87931 0.71006 0.83856 1.90707 1.22108 1.46094 1.85079 1.84504 1.47548 1.82449 1.17567 1.19948 0.84853 0.83678 0.83948 1.90527 1.57530 1.36086 1.67435 1.22014 1.02006 0.96342 0.95340 0.84524 1.23149 1.00722 0.96681 0.93652 1.23335 0.92697 0.97680 1.08638 0.83550 1.19326 0.87791 0.73877 0.74845 1.93185 1.71726 1.95727 1.55955 1.93174 1.96900 1.38877 1.87056 1.93162 1.93338 1.66357 1.63070 0.91808 0.88308 0.94623 0.87959 0.86379 0.71138 0.87394 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.51 11.34 21.66 0.25 -45.26 16 2 C 0.01 0.30 4.92 84.93 0.42 0.71 16 3 Si 0.98 36.75 29.61 68.60 2.03 38.78 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.29 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.36 -16.44 8.72 84.04 0.73 -15.71 16 8 H 0.11 4.59 6.52 -2.91 -0.02 4.57 16 9 N -0.44 -20.56 2.56 -635.55 -1.62 -22.18 16 10 C 0.13 6.17 4.18 86.38 0.36 6.53 16 11 C -0.12 -4.50 6.10 29.85 0.18 -4.32 16 12 C 0.50 17.47 8.33 71.24 0.59 18.06 16 13 O -0.55 -23.18 16.74 21.96 0.37 -22.81 16 14 O -0.51 -13.05 13.42 -51.38 -0.69 -13.74 16 15 C 0.49 21.87 7.38 87.66 0.65 22.52 16 16 O -0.63 -31.02 15.93 -3.09 -0.05 -31.07 16 17 C -0.14 -4.86 4.95 -11.54 -0.06 -4.92 16 18 H 0.14 4.62 6.75 -2.39 -0.02 4.61 16 19 C -0.10 -3.11 9.62 30.58 0.29 -2.81 16 20 C -0.20 -6.15 5.40 -10.81 -0.06 -6.21 16 21 H 0.15 4.65 7.67 -2.39 -0.02 4.64 16 22 C 0.50 13.50 3.36 71.98 0.24 13.74 16 23 F -0.18 -5.38 17.27 44.97 0.78 -4.60 16 24 F -0.18 -4.71 17.32 44.97 0.78 -3.93 16 25 F -0.18 -4.64 15.90 44.97 0.71 -3.92 16 26 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 27 H 0.10 5.11 5.33 -2.39 -0.01 5.09 16 28 H 0.04 1.84 7.55 -2.39 -0.02 1.82 16 29 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 31 H 0.43 6.65 9.10 -74.06 -0.67 5.98 16 32 H 0.11 3.33 8.14 -2.39 -0.02 3.32 16 33 H 0.14 3.38 7.22 -2.39 -0.02 3.36 16 Total: -1.00 -61.55 307.23 6.42 -55.13 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.52 Total: 26.02 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 3.35 Total: 27.60 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.38 Total: -67.45 kcal Atomic # 8 Polarization: -67.25 SS G_CDS: -0.37 Total: -67.62 kcal Atomic # 9 Polarization: -14.73 SS G_CDS: 2.27 Total: -12.46 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -61.55 6.42 -55.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070814.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -216.512 kcal (2) G-P(sol) polarization free energy of solvation -61.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds