Wall clock time and date at job start Tue Mar 31 2020 06:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38431 * 119.83069 * 90.00013 * 13 12 11 15 15 C 1.37887 * 120.18376 * 180.02562 * 14 13 12 16 16 C 1.39672 * 119.86443 * 359.97438 * 15 14 13 17 17 C 1.47648 * 120.16331 * 180.02562 * 16 15 14 18 18 O 1.21483 * 119.99671 * 179.97438 * 17 16 15 19 19 O 1.34712 * 120.00137 * 359.97438 * 17 16 15 20 20 C 1.39748 * 119.67646 * 359.97438 * 16 15 14 21 21 Cl 1.73603 * 120.09629 * 180.02562 * 20 16 15 22 22 C 1.38149 * 119.80974 * 359.77008 * 20 16 15 23 23 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 24 24 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 25 25 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 26 26 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 27 27 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 28 28 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 29 29 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 30 30 H 1.07999 * 119.90754 * 359.97438 * 14 13 12 31 31 H 1.08008 * 120.06564 * 179.97438 * 15 14 13 32 32 H 0.96701 * 117.00373 * 180.02562 * 19 17 16 33 33 H 1.08001 * 119.92961 * 180.23067 * 22 20 16 34 34 H 1.09007 * 113.75652 * 270.36911 * 23 11 10 35 35 H 1.08993 * 113.76177 * 139.00817 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.2400 -5.0950 -4.0174 15 6 -0.6807 -5.7830 -4.7790 16 6 -0.9773 -7.1141 -4.4771 17 6 -1.9618 -7.8573 -5.2886 18 8 -2.2171 -9.0150 -5.0236 19 8 -2.5769 -7.2515 -6.3228 20 6 -0.3369 -7.7394 -3.4039 21 17 -0.6968 -9.3936 -3.0194 22 6 0.5873 -7.0390 -2.6531 23 6 2.1611 -3.7399 -0.0455 24 1 -0.4850 0.8400 -0.0004 25 1 0.4835 -2.5465 0.7729 26 1 -0.3212 -2.8279 -1.5258 27 1 1.3294 -2.4995 -2.2139 28 1 2.3663 -4.2117 -2.7493 29 1 2.6199 -5.6522 -1.7349 30 1 0.4696 -4.0656 -4.2500 31 1 -1.1716 -5.2936 -5.6073 32 1 -3.2138 -7.7784 -6.8245 33 1 1.0861 -7.5215 -1.8255 34 1 3.1447 -3.5475 -0.4741 35 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:49 Heat of formation + Delta-G solvation = -33.513413 kcal Electronic energy + Delta-G solvation = -20517.379277 eV Core-core repulsion = 17121.356990 eV Total energy + Delta-G solvation = -3396.022287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56481 -39.38439 -38.29189 -36.56357 -36.10791 -33.24114 -32.20380 -30.93368 -28.97030 -26.15236 -25.06424 -24.00923 -22.96198 -22.02921 -20.82814 -18.66805 -18.31020 -17.59450 -16.73735 -15.84995 -15.78908 -15.68951 -14.99697 -14.74357 -14.37582 -14.11024 -14.04264 -13.51907 -13.30471 -13.04375 -12.25481 -12.00621 -11.76940 -11.67924 -11.63736 -11.47126 -11.41102 -11.16005 -11.02941 -10.64603 -10.39010 -10.12133 -9.85384 -9.46763 -9.10537 -8.97260 -8.80051 -8.50890 -8.02752 -6.11361 -4.16537 0.46194 1.09880 2.01100 2.40407 2.81732 3.23311 3.32303 3.35114 3.51689 4.34879 4.51662 4.62418 4.85367 4.95316 5.11407 5.17201 5.19377 5.27682 5.55621 5.67702 5.81833 5.94214 5.99326 6.05408 6.26138 6.28846 6.33652 6.43576 6.55432 6.57631 6.66748 7.05626 7.08793 7.66017 7.73064 7.81690 7.94851 8.28890 8.86523 9.49145 10.97945 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.003239 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.289016 B = 8642.077493 C = 9269.781775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.039 3.961 10 C 0.013 3.987 11 N -0.486 5.486 12 C 0.048 3.952 13 C -0.005 4.005 14 C -0.122 4.122 15 C -0.047 4.047 16 C -0.137 4.137 17 C 0.524 3.476 18 O -0.497 6.497 19 O -0.513 6.513 20 C 0.021 3.979 21 Cl -0.039 7.039 22 C -0.110 4.110 23 C -0.001 4.001 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.413 0.587 33 H 0.142 0.858 34 H 0.057 0.943 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 -13.444 -10.861 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.020 3.980 10 C -0.116 4.116 11 N -0.208 5.208 12 C -0.080 4.080 13 C -0.006 4.006 14 C -0.141 4.141 15 C -0.066 4.066 16 C -0.139 4.139 17 C 0.367 3.633 18 O -0.386 6.386 19 O -0.325 6.325 20 C -0.006 4.006 21 Cl -0.009 7.009 22 C -0.130 4.130 23 C -0.129 4.129 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.272 0.728 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.291 -14.061 -10.316 17.487 hybrid contribution 0.521 0.985 -0.731 1.333 sum -0.770 -13.076 -11.048 17.135 Atomic orbital electron populations 1.69968 1.05978 1.26706 1.49584 1.25009 0.94808 0.99155 0.94621 0.86576 0.80171 0.83800 0.77695 1.19731 1.20984 1.20899 1.21118 0.92813 0.90303 1.51581 0.92364 1.20307 0.93738 0.91037 0.92943 1.24225 1.00233 0.85825 1.01268 1.68650 1.26022 1.17513 1.08645 1.21746 0.93891 0.98180 0.94181 1.20167 0.94866 0.92553 0.93040 1.21244 0.96755 1.00747 0.95307 1.21394 0.95108 0.91642 0.98429 1.18720 1.01440 0.95359 0.98430 1.20713 0.79436 0.84705 0.78409 1.90970 1.62006 1.17428 1.68160 1.84550 1.55983 1.48993 1.43017 1.20970 0.97023 0.87370 0.95267 1.98407 1.93558 1.15784 1.93186 1.20909 0.97969 0.94238 0.99837 1.24107 0.95314 0.97960 0.95550 0.92872 0.92260 0.91291 0.92555 0.92477 0.90393 0.84436 0.83750 0.72829 0.84017 0.92459 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 13.29 55.43 0.74 -23.95 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -13.52 8.77 -34.44 -0.30 -13.82 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.04 0.92 3.60 -90.84 -0.33 0.59 16 10 C 0.01 0.28 7.53 -2.57 -0.02 0.26 16 11 N -0.49 -8.96 6.15 -239.49 -1.47 -10.43 16 12 C 0.05 0.71 4.92 -4.97 -0.02 0.69 16 13 C -0.01 -0.07 5.45 -104.54 -0.57 -0.64 16 14 C -0.12 -1.55 9.68 -39.64 -0.38 -1.93 16 15 C -0.05 -0.56 9.62 -39.17 -0.38 -0.93 16 16 C -0.14 -1.78 5.88 -104.96 -0.62 -2.39 16 17 C 0.52 6.44 8.26 34.57 0.29 6.73 16 18 O -0.50 -7.17 14.76 -19.25 -0.28 -7.45 16 19 O -0.51 -4.58 12.68 -40.52 -0.51 -5.09 16 20 C 0.02 0.28 6.35 -39.05 -0.25 0.04 16 21 Cl -0.04 -0.53 26.03 -51.86 -1.35 -1.88 16 22 C -0.11 -1.46 9.46 -39.60 -0.37 -1.83 16 23 C 0.00 -0.02 7.50 -2.76 -0.02 -0.04 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 26 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.06 1.18 7.43 -51.93 -0.39 0.80 16 28 H 0.06 0.83 7.32 -51.93 -0.38 0.45 16 29 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 30 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.14 1.39 7.61 -52.48 -0.40 0.99 16 32 H 0.41 1.76 9.11 45.56 0.42 2.18 16 33 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.06 1.07 7.88 -51.92 -0.41 0.66 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -29.77 320.27 -9.39 -39.16 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -3.23 Total: 1.09 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.07 Total: -11.61 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.74 Total: -34.38 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.80 Total: -12.55 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.35 Total: -1.88 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.77 -9.39 -39.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.643 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds