Wall clock time and date at job start Tue Mar 31 2020 06:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38431 * 119.83069 * 90.00013 * 13 12 11 15 15 C 1.37887 * 120.18376 * 180.02562 * 14 13 12 16 16 C 1.39672 * 119.86443 * 359.97438 * 15 14 13 17 17 C 1.47648 * 120.16331 * 180.02562 * 16 15 14 18 18 O 1.21483 * 119.99671 * 179.97438 * 17 16 15 19 19 O 1.34712 * 120.00137 * 359.97438 * 17 16 15 20 20 C 1.39748 * 119.67646 * 359.97438 * 16 15 14 21 21 Cl 1.73603 * 120.09629 * 180.02562 * 20 16 15 22 22 C 1.38149 * 119.80974 * 359.77008 * 20 16 15 23 23 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 24 24 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 25 25 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 26 26 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 27 27 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 28 28 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 29 29 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 30 30 H 1.07999 * 119.90754 * 359.97438 * 14 13 12 31 31 H 1.08008 * 120.06564 * 179.97438 * 15 14 13 32 32 H 0.96701 * 117.00373 * 180.02562 * 19 17 16 33 33 H 1.08001 * 119.92961 * 180.23067 * 22 20 16 34 34 H 1.09007 * 113.75652 * 270.36911 * 23 11 10 35 35 H 1.08993 * 113.76177 * 139.00817 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.2400 -5.0950 -4.0174 15 6 -0.6807 -5.7830 -4.7790 16 6 -0.9773 -7.1141 -4.4771 17 6 -1.9618 -7.8573 -5.2886 18 8 -2.2171 -9.0150 -5.0236 19 8 -2.5769 -7.2515 -6.3228 20 6 -0.3369 -7.7394 -3.4039 21 17 -0.6968 -9.3936 -3.0194 22 6 0.5873 -7.0390 -2.6531 23 6 2.1611 -3.7399 -0.0455 24 1 -0.4850 0.8400 -0.0004 25 1 0.4835 -2.5465 0.7729 26 1 -0.3212 -2.8279 -1.5258 27 1 1.3294 -2.4995 -2.2139 28 1 2.3663 -4.2117 -2.7493 29 1 2.6199 -5.6522 -1.7349 30 1 0.4696 -4.0656 -4.2500 31 1 -1.1716 -5.2936 -5.6073 32 1 -3.2138 -7.7784 -6.8245 33 1 1.0861 -7.5215 -1.8255 34 1 3.1447 -3.5475 -0.4741 35 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182103.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:48 Heat of formation + Delta-G solvation = -52.709321 kcal Electronic energy + Delta-G solvation = -20518.211674 eV Core-core repulsion = 17121.356990 eV Total energy + Delta-G solvation = -3396.854684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52115 -40.65289 -39.54459 -37.56835 -36.99276 -34.88505 -33.66066 -31.92564 -30.40472 -27.73813 -26.68804 -25.38089 -23.98250 -23.27624 -21.88865 -20.39364 -19.20577 -18.66933 -18.44759 -16.99689 -16.81943 -16.71157 -16.59591 -16.16815 -15.77883 -15.48223 -15.18531 -14.65959 -14.37829 -14.14890 -13.82016 -13.57762 -13.21719 -12.96761 -12.77038 -12.70844 -12.55500 -12.50349 -12.39727 -12.29751 -11.93504 -11.61041 -11.15176 -11.07005 -10.91851 -10.51609 -10.04773 -9.86246 -9.56548 -8.12410 -6.23611 -0.53988 0.11999 1.00089 1.43072 1.43970 1.46336 1.56531 1.99396 2.44028 2.51828 3.17809 3.32157 3.55410 3.73323 3.93733 4.04695 4.17695 4.28542 4.32872 4.53163 4.53777 4.64220 4.79814 4.81117 4.90362 4.98760 5.01976 5.07345 5.30158 5.32712 5.54922 5.58930 5.60038 5.67186 5.88731 6.32466 6.37530 6.86154 6.96045 7.45309 8.96954 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027383 B = 0.003239 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.289016 B = 8642.077493 C = 9269.781775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.028 3.972 11 N -0.485 5.485 12 C 0.050 3.950 13 C -0.018 4.018 14 C -0.126 4.126 15 C -0.039 4.039 16 C -0.146 4.146 17 C 0.528 3.472 18 O -0.523 6.523 19 O -0.503 6.503 20 C 0.008 3.992 21 Cl -0.044 7.044 22 C -0.110 4.110 23 C 0.015 3.985 24 H 0.261 0.739 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.145 0.855 31 H 0.168 0.832 32 H 0.434 0.566 33 H 0.151 0.849 34 H 0.070 0.930 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -13.564 -12.079 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.101 4.101 11 N -0.208 5.208 12 C -0.078 4.078 13 C -0.019 4.019 14 C -0.144 4.144 15 C -0.057 4.057 16 C -0.148 4.148 17 C 0.372 3.628 18 O -0.414 6.414 19 O -0.317 6.317 20 C -0.019 4.019 21 Cl -0.014 7.014 22 C -0.129 4.129 23 C -0.114 4.114 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.163 0.837 31 H 0.185 0.815 32 H 0.297 0.703 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.408 -14.190 -11.556 18.305 hybrid contribution 0.203 0.979 -0.397 1.076 sum -0.204 -13.211 -11.953 17.817 Atomic orbital electron populations 1.70092 1.07468 1.27405 1.51031 1.25774 0.95519 1.02506 0.94515 0.85573 0.79267 0.79723 0.77489 1.18769 1.20640 1.21014 1.21471 0.93082 0.91485 1.50778 0.92149 1.20308 0.94203 0.92369 0.93458 1.23904 0.98920 0.87575 0.99663 1.68544 1.26462 1.15867 1.09889 1.21766 0.94352 0.98461 0.93177 1.20111 0.95370 0.92764 0.93631 1.21410 0.96710 1.01132 0.95159 1.21599 0.94466 0.91070 0.98589 1.18959 1.01549 0.95914 0.98416 1.20610 0.79215 0.84208 0.78725 1.90964 1.62904 1.18468 1.69053 1.84496 1.56155 1.48966 1.42071 1.21099 0.97576 0.87347 0.95865 1.98401 1.93626 1.16150 1.93253 1.20996 0.97849 0.94125 0.99975 1.23958 0.95150 0.95688 0.96565 0.92958 0.96047 0.93312 0.92328 0.91904 0.88344 0.83741 0.81482 0.70327 0.83118 0.91201 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.28 13.29 21.45 0.28 -52.00 16 2 C 0.02 0.86 5.46 84.66 0.46 1.33 16 3 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.53 -27.56 8.77 25.60 0.22 -27.33 16 8 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.02 0.75 3.60 -10.89 -0.04 0.72 16 10 C 0.03 1.20 7.53 86.34 0.65 1.85 16 11 N -0.49 -17.35 6.15 -911.59 -5.61 -22.95 16 12 C 0.05 1.38 4.92 85.56 0.42 1.80 16 13 C -0.02 -0.46 5.45 -19.81 -0.11 -0.56 16 14 C -0.13 -2.97 9.68 22.23 0.22 -2.75 16 15 C -0.04 -0.84 9.62 22.53 0.22 -0.62 16 16 C -0.15 -3.55 5.88 -20.08 -0.12 -3.67 16 17 C 0.53 12.11 8.26 70.31 0.58 12.69 16 18 O -0.52 -14.51 14.76 19.89 0.29 -14.22 16 19 O -0.50 -7.70 12.68 -56.22 -0.71 -8.42 16 20 C 0.01 0.22 6.35 22.61 0.14 0.36 16 21 Cl -0.04 -1.15 26.03 -2.72 -0.07 -1.22 16 22 C -0.11 -2.75 9.46 22.26 0.21 -2.54 16 23 C 0.01 0.55 7.50 86.41 0.65 1.20 16 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.43 7.43 -2.39 -0.02 2.41 16 28 H 0.06 1.68 7.32 -2.39 -0.02 1.67 16 29 H 0.10 2.32 8.02 -2.39 -0.02 2.30 16 30 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.17 2.75 7.61 -2.91 -0.02 2.72 16 32 H 0.43 2.56 9.11 -74.06 -0.67 1.88 16 33 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.07 2.45 7.88 -2.38 -0.02 2.43 16 35 H 0.08 2.79 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -63.71 320.27 0.17 -63.54 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.45 Total: 9.13 kcal Atomic # 6 Polarization: -21.05 SS G_CDS: 3.51 Total: -17.54 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -5.32 Total: -74.95 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.42 Total: -22.64 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -63.71 0.17 -63.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182103.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.831 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds