Wall clock time and date at job start Tue Mar 31 2020 07:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48496 * 109.47349 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47243 * 30.00378 * 3 2 1 6 6 H 1.48501 * 109.46816 * 150.00142 * 3 2 1 7 7 C 1.37881 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99753 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99900 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46865 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00344 * 270.00495 * 10 9 7 12 12 C 1.53009 * 109.46992 * 269.99901 * 11 10 9 13 13 F 1.39902 * 109.46569 * 60.00002 * 12 11 10 14 14 F 1.39896 * 109.46709 * 179.97438 * 12 11 10 15 15 F 1.39900 * 109.46974 * 300.00167 * 12 11 10 16 16 C 1.34774 * 119.99594 * 90.00394 * 10 9 7 17 17 O 1.21283 * 120.00311 * 359.97438 * 16 10 9 18 18 C 1.50703 * 120.00073 * 179.97438 * 16 10 9 19 19 H 1.09000 * 115.55437 * 30.59689 * 18 16 10 20 20 C 1.53071 * 117.51278 * 176.29719 * 18 16 10 21 21 C 1.52998 * 117.50069 * 244.90882 * 18 16 10 22 22 H 1.08996 * 117.49925 * 144.99715 * 21 18 16 23 23 C 1.50697 * 117.49780 * 359.97438 * 21 18 16 24 24 O 1.20823 * 120.00523 * 298.69618 * 23 21 18 25 25 O 1.34229 * 119.99922 * 118.96991 * 23 21 18 26 26 H 0.96998 * 119.99772 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46739 * 60.00672 * 9 7 2 28 28 H 1.08998 * 109.47339 * 300.00492 * 9 7 2 29 29 H 1.09001 * 109.46988 * 29.99734 * 11 10 9 30 30 H 1.08994 * 109.47312 * 150.00102 * 11 10 9 31 31 H 1.08998 * 117.51361 * 359.97438 * 20 18 16 32 32 H 1.09000 * 117.51085 * 214.95895 * 20 18 16 33 33 H 0.96695 * 117.00236 * 179.72187 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6782 -4.1688 -1.2710 12 6 1.7472 -5.2999 -1.7126 13 9 0.4514 -4.7992 -1.8787 14 9 2.2006 -5.8306 -2.9250 15 9 1.7379 -6.3036 -0.7380 16 6 2.6418 -4.1254 1.1649 17 8 2.2488 -3.6647 2.2157 18 6 3.6207 -5.2712 1.1637 19 1 4.3059 -5.3034 0.3167 20 6 4.1478 -5.7523 2.5179 21 6 3.1456 -6.6069 1.7393 22 1 3.5180 -7.5177 1.2707 23 6 1.7348 -6.6758 2.2644 24 8 1.3971 -5.9685 3.1840 25 8 0.8546 -7.5269 1.7142 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.6854 -3.3868 -2.0303 30 1 3.6877 -4.5589 -1.1416 31 1 3.7869 -5.2398 3.4096 32 1 5.1796 -6.1010 2.5616 33 1 -0.0373 -7.5383 2.0875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:09 Heat of formation + Delta-G solvation = -244.329620 kcal Electronic energy + Delta-G solvation = -25549.652535 eV Core-core repulsion = 21161.922666 eV Total energy + Delta-G solvation = -4387.729869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.78686 -47.34519 -47.22511 -40.55790 -39.07120 -36.52802 -35.54559 -35.16761 -32.77453 -29.35067 -27.50173 -25.65356 -24.33060 -23.27254 -21.97802 -20.59584 -19.00905 -18.49854 -18.23012 -17.92865 -17.35447 -16.93484 -16.15174 -15.90154 -15.49468 -15.21038 -14.61932 -14.30932 -14.18574 -14.11206 -13.73917 -13.71399 -13.45947 -13.41000 -13.26906 -12.65800 -12.37547 -12.23491 -11.95500 -11.75857 -11.36241 -11.29831 -11.01128 -10.77777 -10.69257 -10.57791 -10.32639 -10.23615 -9.77902 -9.16271 -8.50268 -8.03733 -6.11188 -4.17265 2.17761 2.79157 3.02245 3.14155 3.26525 3.33924 3.37340 3.46714 3.92573 4.12847 4.25630 4.36210 4.39718 4.65973 4.71395 4.83168 4.96240 5.23185 5.26172 5.28962 5.49873 5.62786 5.71716 6.11375 6.68477 6.81851 7.24813 7.34542 7.83032 8.03951 8.10833 8.11553 8.72651 8.88580 9.48022 10.97180 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.006487 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.277137 B = 4315.570416 C = 5160.846271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.244 3.756 10 N -0.592 5.592 11 C 0.073 3.927 12 C 0.425 3.575 13 F -0.176 7.176 14 F -0.189 7.189 15 F -0.179 7.179 16 C 0.527 3.473 17 O -0.492 6.492 18 C -0.164 4.164 19 H 0.132 0.868 20 C -0.115 4.115 21 C -0.137 4.137 22 H 0.139 0.861 23 C 0.496 3.504 24 O -0.483 6.483 25 O -0.513 6.513 26 H 0.265 0.735 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -15.157 -2.844 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.126 3.874 10 N -0.324 5.324 11 C -0.055 4.055 12 C 0.369 3.631 13 F -0.158 7.158 14 F -0.171 7.171 15 F -0.161 7.161 16 C 0.312 3.688 17 O -0.365 6.365 18 C -0.185 4.185 19 H 0.150 0.850 20 C -0.152 4.152 21 C -0.156 4.156 22 H 0.157 0.843 23 C 0.336 3.664 24 O -0.368 6.368 25 O -0.325 6.325 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.147 0.853 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.135 0.865 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 7.339 -14.547 -2.136 16.433 hybrid contribution -0.352 0.653 -0.195 0.767 sum 6.987 -13.894 -2.331 15.725 Atomic orbital electron populations 1.69937 1.06036 1.27228 1.49671 1.24944 0.94896 0.99314 0.94840 0.86459 0.79822 0.82895 0.78020 1.20563 1.21039 1.19841 1.21373 0.93378 0.90397 1.52045 0.92193 1.19503 0.87093 0.81542 0.99274 1.48121 1.46613 1.35359 1.02356 1.22640 0.96251 0.94959 0.91669 1.21693 0.82022 0.84595 0.74810 1.93216 1.40195 1.87087 1.95252 1.93149 1.88963 1.88058 1.46921 1.93214 1.96608 1.63597 1.62632 1.19381 0.81876 0.83205 0.84298 1.90785 1.56044 1.59576 1.30055 1.22570 1.02108 0.93016 1.00832 0.84997 1.23184 0.97618 0.98823 0.95563 1.21593 0.90669 0.96738 1.06633 0.84312 1.22130 0.87032 0.76756 0.80448 1.90829 1.78755 1.39668 1.27583 1.84471 1.25877 1.59819 1.62290 0.92551 0.94149 0.93392 0.85328 0.87059 0.85874 0.86510 0.73323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 8 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 9 C 0.24 6.23 4.95 -5.19 -0.03 6.21 16 10 N -0.59 -11.98 2.37 -175.06 -0.42 -12.40 16 11 C 0.07 1.08 5.33 -4.04 -0.02 1.06 16 12 C 0.43 6.35 3.29 37.16 0.12 6.47 16 13 F -0.18 -3.15 16.22 2.25 0.04 -3.11 16 14 F -0.19 -2.52 17.32 2.25 0.04 -2.48 16 15 F -0.18 -2.67 13.68 2.25 0.03 -2.64 16 16 C 0.53 10.64 6.26 -10.98 -0.07 10.57 16 17 O -0.49 -12.31 14.16 -13.48 -0.19 -12.50 16 18 C -0.16 -2.29 4.38 -91.73 -0.40 -2.69 16 19 H 0.13 1.35 6.31 -51.93 -0.33 1.02 16 20 C -0.11 -1.41 9.56 -26.69 -0.26 -1.66 16 21 C -0.14 -1.73 5.20 -91.77 -0.48 -2.21 16 22 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 23 C 0.50 7.85 6.85 36.00 0.25 8.09 16 24 O -0.48 -9.62 15.27 -25.22 -0.39 -10.01 16 25 O -0.51 -6.72 12.96 -39.26 -0.51 -7.23 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.04 1.05 7.25 -51.93 -0.38 0.67 16 28 H 0.05 1.42 7.42 -51.93 -0.39 1.03 16 29 H 0.13 1.84 8.07 -51.93 -0.42 1.42 16 30 H 0.11 1.20 5.94 -51.93 -0.31 0.89 16 31 H 0.12 1.89 7.23 -51.93 -0.38 1.52 16 32 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.41 3.87 9.10 45.56 0.41 4.29 16 LS Contribution 300.53 15.07 4.53 4.53 Total: -1.00 -35.76 300.53 -4.62 -40.38 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -2.17 Total: 1.97 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: -1.30 Total: 12.54 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.32 Total: -37.85 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -1.08 Total: -29.74 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 0.11 Total: -8.23 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.76 -4.62 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -203.952 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds