Wall clock time and date at job start Tue Mar 31 2020 07:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48496 * 109.47349 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47243 * 30.00378 * 3 2 1 6 6 H 1.48501 * 109.46816 * 150.00142 * 3 2 1 7 7 C 1.37881 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99753 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99900 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46865 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00344 * 270.00495 * 10 9 7 12 12 C 1.53009 * 109.46992 * 269.99901 * 11 10 9 13 13 F 1.39902 * 109.46569 * 60.00002 * 12 11 10 14 14 F 1.39896 * 109.46709 * 179.97438 * 12 11 10 15 15 F 1.39900 * 109.46974 * 300.00167 * 12 11 10 16 16 C 1.34774 * 119.99594 * 90.00394 * 10 9 7 17 17 O 1.21283 * 120.00311 * 359.97438 * 16 10 9 18 18 C 1.50703 * 120.00073 * 179.97438 * 16 10 9 19 19 H 1.09000 * 115.55437 * 30.59689 * 18 16 10 20 20 C 1.53071 * 117.51278 * 176.29719 * 18 16 10 21 21 C 1.52998 * 117.50069 * 244.90882 * 18 16 10 22 22 H 1.08996 * 117.49925 * 144.99715 * 21 18 16 23 23 C 1.50697 * 117.49780 * 359.97438 * 21 18 16 24 24 O 1.20823 * 120.00523 * 298.69618 * 23 21 18 25 25 O 1.34229 * 119.99922 * 118.96991 * 23 21 18 26 26 H 0.96998 * 119.99772 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46739 * 60.00672 * 9 7 2 28 28 H 1.08998 * 109.47339 * 300.00492 * 9 7 2 29 29 H 1.09001 * 109.46988 * 29.99734 * 11 10 9 30 30 H 1.08994 * 109.47312 * 150.00102 * 11 10 9 31 31 H 1.08998 * 117.51361 * 359.97438 * 20 18 16 32 32 H 1.09000 * 117.51085 * 214.95895 * 20 18 16 33 33 H 0.96695 * 117.00236 * 179.72187 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 2.6782 -4.1688 -1.2710 12 6 1.7472 -5.2999 -1.7126 13 9 0.4514 -4.7992 -1.8787 14 9 2.2006 -5.8306 -2.9250 15 9 1.7379 -6.3036 -0.7380 16 6 2.6418 -4.1254 1.1649 17 8 2.2488 -3.6647 2.2157 18 6 3.6207 -5.2712 1.1637 19 1 4.3059 -5.3034 0.3167 20 6 4.1478 -5.7523 2.5179 21 6 3.1456 -6.6069 1.7393 22 1 3.5180 -7.5177 1.2707 23 6 1.7348 -6.6758 2.2644 24 8 1.3971 -5.9685 3.1840 25 8 0.8546 -7.5269 1.7142 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.6854 -3.3868 -2.0303 30 1 3.6877 -4.5589 -1.1416 31 1 3.7869 -5.2398 3.4096 32 1 5.1796 -6.1010 2.5616 33 1 -0.0373 -7.5383 2.0875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:09 Heat of formation + Delta-G solvation = -269.966410 kcal Electronic energy + Delta-G solvation = -25550.764229 eV Core-core repulsion = 21161.922666 eV Total energy + Delta-G solvation = -4388.841564 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.99749 -48.52666 -48.47862 -41.82688 -40.50773 -37.73258 -36.92357 -36.63786 -34.84126 -30.96139 -29.19430 -26.93101 -25.89173 -24.57929 -23.54619 -21.69446 -20.35466 -19.71794 -19.45215 -19.20401 -18.84284 -18.46308 -17.80286 -17.36396 -16.78802 -16.71843 -16.13203 -15.71875 -15.40913 -15.38452 -15.18315 -14.92283 -14.78137 -14.65322 -14.60753 -14.25469 -13.92860 -13.62993 -13.47316 -13.11841 -12.96360 -12.76272 -12.59246 -12.54854 -12.24518 -11.84448 -11.78546 -11.64528 -11.54601 -10.76636 -10.65919 -9.77703 -8.24951 -6.40020 0.96400 1.37565 1.41019 1.45619 1.51000 1.78293 1.97771 2.13217 2.38469 2.81179 2.94820 3.05920 3.08043 3.18682 3.58551 3.62021 3.67196 3.94074 4.21132 4.32748 4.39247 4.68921 4.85707 4.91952 5.12828 5.15973 5.39754 5.61196 5.71355 5.98945 6.43157 6.69517 6.98543 7.19886 7.34144 8.83402 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.006487 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.277137 B = 4315.570416 C = 5160.846271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.263 3.737 10 N -0.600 5.600 11 C 0.068 3.932 12 C 0.430 3.570 13 F -0.200 7.200 14 F -0.174 7.174 15 F -0.177 7.177 16 C 0.515 3.485 17 O -0.557 6.557 18 C -0.168 4.168 19 H 0.184 0.816 20 C -0.104 4.104 21 C -0.129 4.129 22 H 0.189 0.811 23 C 0.487 3.513 24 O -0.537 6.537 25 O -0.506 6.506 26 H 0.267 0.733 27 H 0.028 0.972 28 H -0.009 1.009 29 H 0.134 0.866 30 H 0.165 0.835 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.655 -16.524 -4.444 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.796 3.204 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.083 0.917 9 C 0.142 3.858 10 N -0.330 5.330 11 C -0.057 4.057 12 C 0.374 3.626 13 F -0.182 7.182 14 F -0.155 7.155 15 F -0.158 7.158 16 C 0.304 3.696 17 O -0.434 6.434 18 C -0.189 4.189 19 H 0.201 0.799 20 C -0.141 4.141 21 C -0.148 4.148 22 H 0.206 0.794 23 C 0.330 3.670 24 O -0.427 6.427 25 O -0.318 6.318 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.009 0.991 29 H 0.152 0.848 30 H 0.182 0.818 31 H 0.101 0.899 32 H 0.190 0.810 33 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 10.536 -15.975 -3.794 19.509 hybrid contribution -1.427 0.989 0.305 1.763 sum 9.109 -14.985 -3.488 17.880 Atomic orbital electron populations 1.70079 1.07820 1.28235 1.50785 1.25928 0.95756 1.03344 0.94342 0.85349 0.78238 0.77954 0.78865 1.18558 1.21195 1.19352 1.21697 0.93668 0.91315 1.51480 0.91703 1.18840 0.87579 0.83471 0.95883 1.47984 1.45788 1.34344 1.04922 1.23032 0.98398 0.95151 0.89161 1.21590 0.80972 0.84689 0.75309 1.93180 1.42066 1.87498 1.95416 1.93182 1.88602 1.87790 1.45958 1.93217 1.96519 1.63434 1.62636 1.20518 0.81956 0.84078 0.83030 1.90756 1.58425 1.61880 1.32294 1.22629 1.01543 0.90781 1.03953 0.79901 1.23350 1.00073 0.97644 0.93000 1.21944 0.88713 0.97782 1.06390 0.79395 1.22972 0.88579 0.75779 0.79646 1.90823 1.79931 1.41750 1.30160 1.84447 1.26706 1.58853 1.61817 0.92443 0.95355 0.99054 0.84836 0.81771 0.89909 0.81002 0.71859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.56 13.29 21.45 0.28 -56.27 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -30.41 9.39 25.60 0.24 -30.17 16 8 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 9 C 0.26 14.05 4.95 85.63 0.42 14.48 16 10 N -0.60 -24.20 2.37 -826.15 -1.96 -26.16 16 11 C 0.07 1.85 5.33 86.38 0.46 2.31 16 12 C 0.43 11.91 3.29 71.99 0.24 12.14 16 13 F -0.20 -7.15 16.22 44.97 0.73 -6.42 16 14 F -0.17 -4.05 17.32 44.97 0.78 -3.27 16 15 F -0.18 -4.79 13.68 44.97 0.62 -4.17 16 16 C 0.52 20.76 6.26 87.66 0.55 21.30 16 17 O -0.56 -29.30 14.16 15.17 0.21 -29.08 16 18 C -0.17 -4.13 4.38 -11.52 -0.05 -4.18 16 19 H 0.18 2.53 6.31 -2.39 -0.02 2.51 16 20 C -0.10 -2.22 9.56 30.62 0.29 -1.93 16 21 C -0.13 -2.83 5.20 -11.54 -0.06 -2.89 16 22 H 0.19 2.28 8.14 -2.39 -0.02 2.26 16 23 C 0.49 15.11 6.85 71.24 0.49 15.60 16 24 O -0.54 -22.35 15.27 28.16 0.43 -21.92 16 25 O -0.51 -12.70 12.96 -51.41 -0.67 -13.37 16 26 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 27 H 0.03 1.56 7.25 -2.39 -0.02 1.54 16 28 H -0.01 -0.56 7.42 -2.39 -0.02 -0.57 16 29 H 0.13 3.53 8.07 -2.39 -0.02 3.51 16 30 H 0.16 2.66 5.94 -2.39 -0.01 2.64 16 31 H 0.08 2.54 7.23 -2.39 -0.02 2.53 16 32 H 0.17 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.42 7.96 9.10 -74.06 -0.67 7.29 16 Total: -1.00 -85.45 300.53 6.01 -79.44 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.51 Total: 7.56 kcal Atomic # 6 Polarization: 24.39 SS G_CDS: 3.04 Total: 27.43 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.68 Total: -82.44 kcal Atomic # 8 Polarization: -64.35 SS G_CDS: -0.02 Total: -64.38 kcal Atomic # 9 Polarization: -15.99 SS G_CDS: 2.12 Total: -13.86 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -85.45 6.01 -79.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.522 kcal (2) G-P(sol) polarization free energy of solvation -85.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -269.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds