Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86798 * 120.00144 * 2 1 4 4 H 1.48494 * 109.47390 * 275.50236 * 3 2 1 5 5 H 1.48499 * 109.47226 * 35.50421 * 3 2 1 6 6 H 1.48504 * 109.47008 * 155.49981 * 3 2 1 7 7 C 1.38953 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00258 * 50.35925 * 7 2 1 9 9 N 1.37098 * 119.99425 * 230.35339 * 7 2 1 10 10 C 1.46503 * 119.99829 * 233.26534 * 9 7 2 11 11 C 1.52999 * 109.47374 * 270.00848 * 10 9 7 12 12 C 1.50705 * 109.46745 * 180.02562 * 11 10 9 13 13 O 1.20817 * 120.00291 * 359.97438 * 12 11 10 14 14 O 1.34230 * 119.99549 * 179.97438 * 12 11 10 15 15 C 1.34779 * 120.00331 * 53.27786 * 9 7 2 16 16 O 1.21289 * 120.00049 * 184.70269 * 15 9 7 17 17 C 1.50701 * 119.99710 * 4.41870 * 15 9 7 18 18 C 1.52999 * 115.54708 * 59.49361 * 17 15 9 19 19 F 1.39907 * 109.47255 * 73.64852 * 18 17 15 20 20 F 1.39903 * 109.47336 * 193.64264 * 18 17 15 21 21 F 1.39894 * 109.47571 * 313.64688 * 18 17 15 22 22 C 1.53000 * 117.49948 * 273.82739 * 17 15 9 23 23 C 1.52999 * 117.49877 * 205.16157 * 17 15 9 24 24 H 0.97005 * 119.99983 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46894 * 30.01132 * 10 9 7 26 26 H 1.09003 * 109.46944 * 150.00478 * 10 9 7 27 27 H 1.09004 * 109.47025 * 299.99577 * 11 10 9 28 28 H 1.08994 * 109.47197 * 60.00103 * 11 10 9 29 29 H 0.96699 * 117.00259 * 179.97438 * 14 12 11 30 30 H 1.08993 * 117.49997 * 359.97438 * 22 17 15 31 31 H 1.08998 * 117.49828 * 145.02702 * 22 17 15 32 32 H 1.09002 * 117.49955 * 214.97777 * 23 17 15 33 33 H 1.08995 * 117.49492 * 0.02562 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3794 2.1135 -1.3935 5 1 1.5086 2.6163 0.8131 6 1 3.5990 1.4093 0.5806 7 6 2.0088 -1.2034 -0.0005 8 1 1.7621 -1.9691 -0.7211 9 7 3.0076 -1.4186 0.9136 10 6 4.3383 -1.8319 0.4610 11 6 4.4073 -3.3595 0.4081 12 6 5.7764 -3.7845 -0.0569 13 8 6.6109 -2.9513 -0.3195 14 8 6.0686 -5.0889 -0.1793 15 6 2.7653 -1.2502 2.2287 16 8 3.6692 -1.3571 3.0305 17 6 1.3727 -0.9227 2.7024 18 6 0.2973 -1.9532 2.3524 19 9 0.4524 -3.0828 3.1631 20 9 -0.9686 -1.3969 2.5651 21 9 0.4247 -2.3224 1.0090 22 6 0.9604 0.5506 2.7193 23 6 1.2353 -0.1829 4.0346 24 1 -0.4850 0.8401 0.0004 25 1 4.5267 -1.4250 -0.5325 26 1 5.0906 -1.4580 1.1555 27 1 4.2190 -3.7663 1.4017 28 1 3.6550 -3.7334 -0.2863 29 1 6.9595 -5.3128 -0.4813 30 1 1.6965 1.2830 2.3883 31 1 -0.0771 0.7856 2.4817 32 1 0.3785 -0.4300 4.6615 33 1 2.1522 0.0673 4.5681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183313.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -234.825812 kcal Electronic energy + Delta-G solvation = -26104.319050 eV Core-core repulsion = 21717.001297 eV Total energy + Delta-G solvation = -4387.317753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.61297 -48.24951 -47.88342 -41.43500 -40.88103 -37.75138 -37.14750 -36.74972 -34.38075 -32.34936 -28.08963 -27.06219 -25.95300 -23.68494 -23.52994 -21.84337 -21.29938 -19.69504 -19.16186 -18.89934 -18.78652 -17.88141 -17.80093 -17.18907 -16.92332 -16.56330 -16.16077 -15.60147 -15.47948 -15.01209 -14.82108 -14.67495 -14.56070 -14.34898 -14.19297 -14.07788 -14.02363 -13.84139 -13.39532 -13.30924 -13.00122 -12.63840 -12.56719 -12.31818 -12.13111 -12.04150 -11.74484 -11.65877 -11.50789 -10.72968 -10.39046 -9.56305 -8.67812 -5.92148 1.17544 1.20394 1.36726 1.42930 1.55324 1.95679 2.17121 2.25605 2.38825 2.66123 2.81015 3.18727 3.42906 3.63857 3.81649 3.88748 4.02029 4.14396 4.24535 4.42867 4.48530 4.60509 4.63683 4.75472 4.82136 5.01015 5.05352 5.57504 5.60674 5.80862 6.50450 6.97260 6.99244 7.28859 7.76819 8.43091 Molecular weight = 295.09amu Principal moments of inertia in cm(-1) A = 0.016828 B = 0.007720 C = 0.006579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.489768 B = 3626.288452 C = 4254.684984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.098 3.902 3 Si 0.845 3.155 4 H -0.280 1.280 5 H -0.262 1.262 6 H -0.284 1.284 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.446 5.446 10 C 0.114 3.886 11 C -0.116 4.116 12 C 0.499 3.501 13 O -0.549 6.549 14 O -0.508 6.508 15 C 0.510 3.490 16 O -0.604 6.604 17 C -0.203 4.203 18 C 0.500 3.500 19 F -0.202 7.202 20 F -0.184 7.184 21 F -0.132 7.132 22 C -0.126 4.126 23 C -0.120 4.120 24 H 0.285 0.715 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.121 0.879 29 H 0.428 0.572 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 -3.527 2.378 4.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.118 4.118 3 Si 0.669 3.331 4 H -0.207 1.207 5 H -0.187 1.187 6 H -0.209 1.209 7 C -0.508 4.508 8 H 0.103 0.897 9 N -0.164 5.164 10 C -0.008 4.008 11 C -0.155 4.155 12 C 0.343 3.657 13 O -0.440 6.440 14 O -0.322 6.322 15 C 0.300 3.700 16 O -0.490 6.490 17 C -0.207 4.207 18 C 0.446 3.554 19 F -0.184 7.184 20 F -0.166 7.166 21 F -0.112 7.112 22 C -0.163 4.163 23 C -0.157 4.157 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.139 0.861 29 H 0.290 0.710 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.690 -3.242 2.762 4.315 hybrid contribution 0.936 0.717 -0.773 1.410 sum 1.627 -2.525 1.990 3.603 Atomic orbital electron populations 1.70314 1.07359 1.29804 1.33748 1.25472 0.94276 0.98778 0.93319 0.87393 0.81971 0.85116 0.78635 1.20670 1.18661 1.20935 1.18371 1.11897 1.01967 1.18553 0.89685 1.43536 1.09458 1.59369 1.04031 1.21372 0.86035 0.92766 1.00654 1.21542 0.91895 0.97416 1.04653 1.23225 0.89897 0.80170 0.72450 1.90697 1.50870 1.54007 1.48415 1.84509 1.41631 1.26064 1.79946 1.19461 0.87760 0.80085 0.82709 1.90533 1.46266 1.57237 1.54935 1.21986 0.94039 0.96656 1.08025 1.19114 0.80322 0.79885 0.76093 1.93105 1.95732 1.55081 1.74442 1.93082 1.43247 1.85390 1.94864 1.93550 1.94939 1.91855 1.30873 1.23127 1.03515 0.89570 1.00131 1.23329 1.05183 0.98181 0.89001 0.90378 0.90045 0.92394 0.87930 0.86120 0.70985 0.89672 0.85975 0.84957 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -35.53 11.22 21.66 0.24 -35.29 16 2 C 0.10 4.50 2.76 84.93 0.23 4.73 16 3 Si 0.84 36.82 25.23 68.60 1.73 38.55 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.26 -10.61 6.89 99.48 0.68 -9.93 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.38 -17.96 5.64 84.04 0.47 -17.48 16 8 H 0.09 4.21 7.75 -2.91 -0.02 4.19 16 9 N -0.45 -20.27 2.02 -635.52 -1.29 -21.56 16 10 C 0.11 4.70 4.70 86.38 0.41 5.11 16 11 C -0.12 -3.92 6.14 29.85 0.18 -3.74 16 12 C 0.50 15.22 8.33 71.24 0.59 15.81 16 13 O -0.55 -19.92 16.74 21.99 0.37 -19.55 16 14 O -0.51 -11.43 13.42 -51.42 -0.69 -12.12 16 15 C 0.51 23.72 6.46 87.66 0.57 24.29 16 16 O -0.60 -29.99 16.10 -3.06 -0.05 -30.03 16 17 C -0.20 -8.40 1.06 -52.93 -0.06 -8.45 16 18 C 0.50 20.89 2.63 71.98 0.19 21.08 16 19 F -0.20 -8.15 17.32 44.97 0.78 -7.37 16 20 F -0.18 -7.27 15.95 44.97 0.72 -6.55 16 21 F -0.13 -6.07 11.29 44.97 0.51 -5.56 16 22 C -0.13 -4.74 6.31 30.62 0.19 -4.54 16 23 C -0.12 -4.03 9.58 30.62 0.29 -3.73 16 24 H 0.29 12.01 8.31 -92.70 -0.77 11.24 16 25 H 0.08 3.31 8.00 -2.38 -0.02 3.29 16 26 H 0.06 2.55 7.32 -2.39 -0.02 2.54 16 27 H 0.10 3.51 8.14 -2.38 -0.02 3.49 16 28 H 0.12 3.81 8.14 -2.39 -0.02 3.79 16 29 H 0.43 5.35 9.10 -74.06 -0.67 4.68 16 30 H 0.09 3.36 4.80 -2.39 -0.01 3.35 16 31 H 0.12 4.40 7.09 -2.39 -0.02 4.38 16 32 H 0.13 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.11 3.79 7.89 -2.39 -0.02 3.77 16 Total: -1.00 -58.24 288.70 5.89 -52.35 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.49 Total: 14.07 kcal Atomic # 6 Polarization: 29.98 SS G_CDS: 3.08 Total: 33.06 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -1.04 Total: -56.85 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -0.37 Total: -61.70 kcal Atomic # 9 Polarization: -21.48 SS G_CDS: 2.00 Total: -19.48 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 1.73 Total: 38.55 kcal Total: -58.24 5.89 -52.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183313.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.474 kcal (2) G-P(sol) polarization free energy of solvation -58.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds