Wall clock time and date at job start Tue Mar 31 2020 06:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00160 * 2 1 4 4 H 1.48505 * 109.46933 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.46627 * 29.99742 * 3 2 1 6 6 H 1.48491 * 109.47046 * 149.99731 * 3 2 1 7 7 C 1.38813 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 204.69816 * 7 2 1 9 9 N 1.36938 * 120.00462 * 24.69051 * 7 2 1 10 10 C 1.46492 * 120.00263 * 191.71954 * 9 7 2 11 11 C 1.50693 * 109.47579 * 90.00087 * 10 9 7 12 12 C 1.32575 * 120.00565 * 124.99898 * 11 10 9 13 13 C 1.47800 * 120.00346 * 180.02562 * 12 11 10 14 14 C 1.39539 * 120.12890 * 179.97438 * 13 12 11 15 15 C 1.37946 * 119.87322 * 179.97438 * 14 13 12 16 16 C 1.38469 * 120.12563 * 0.27808 * 15 14 13 17 17 Cl 1.73600 * 119.86698 * 179.72248 * 16 15 14 18 18 C 1.38461 * 120.25866 * 359.44474 * 16 15 14 19 19 C 1.37952 * 120.12608 * 0.55491 * 18 16 15 20 20 C 1.46504 * 119.99594 * 11.71954 * 9 7 2 21 21 C 1.50703 * 109.47026 * 266.47352 * 20 9 7 22 22 O 1.20824 * 119.99897 * 359.97438 * 21 20 9 23 23 O 1.34228 * 119.99602 * 180.02562 * 21 20 9 24 24 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47106 * 329.99620 * 10 9 7 26 26 H 1.09000 * 109.47382 * 210.00465 * 10 9 7 27 27 H 1.08002 * 119.99765 * 305.00120 * 11 10 9 28 28 H 1.08002 * 119.99670 * 0.02562 * 12 11 10 29 29 H 1.08004 * 120.06796 * 359.95648 * 14 13 12 30 30 H 1.08003 * 119.94101 * 179.97438 * 15 14 13 31 31 H 1.08003 * 119.93907 * 180.25178 * 18 16 15 32 32 H 1.08001 * 120.05966 * 179.74757 * 19 18 16 33 33 H 1.09004 * 109.46964 * 26.47387 * 20 9 7 34 34 H 1.08999 * 109.47037 * 146.47381 * 20 9 7 35 35 H 0.96701 * 116.99540 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0162 -1.2451 0.3903 9 7 1.4195 -2.3337 -0.4964 10 6 2.0369 -3.6424 -0.2684 11 6 1.5069 -4.2315 1.0134 12 6 0.9527 -5.4359 1.0102 13 6 0.4324 -6.0133 2.2673 14 6 -0.1519 -7.2805 2.2668 15 6 -0.6354 -7.8146 3.4432 16 6 -0.5468 -7.0935 4.6220 17 17 -1.1639 -7.7691 6.0972 18 6 0.0371 -5.8380 4.6296 19 6 0.5240 -5.2937 3.4593 20 6 0.1700 -2.2354 -1.2550 21 6 -0.9993 -2.4284 -0.3241 22 8 -0.8085 -2.6281 0.8522 23 8 -2.2527 -2.3794 -0.8019 24 1 -0.4850 0.8400 -0.0004 25 1 3.1183 -3.5262 -0.1950 26 1 1.7985 -4.3064 -1.0992 27 1 1.5786 -3.6725 1.9347 28 1 0.8814 -5.9950 0.0889 29 1 -0.2259 -7.8420 1.3472 30 1 -1.0882 -8.7951 3.4440 31 1 0.1071 -5.2817 5.5527 32 1 0.9756 -4.3127 3.4658 33 1 0.1047 -1.2524 -1.7216 34 1 0.1516 -3.0055 -2.0261 35 1 -2.9701 -2.5086 -0.1665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:55 Heat of formation + Delta-G solvation = -32.006976 kcal Electronic energy + Delta-G solvation = -21066.134437 eV Core-core repulsion = 17670.177474 eV Total energy + Delta-G solvation = -3395.956963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.13048 -38.69790 -36.55229 -36.10183 -34.46002 -33.73434 -31.44915 -30.96063 -29.45071 -27.40732 -25.53645 -23.10336 -22.60278 -21.46806 -20.05588 -18.91928 -17.13895 -16.92884 -16.62478 -15.58668 -15.30287 -15.09130 -14.86948 -14.16812 -14.09165 -13.54755 -13.42258 -13.38423 -13.16743 -12.78907 -12.10312 -11.70053 -11.64073 -11.51180 -11.35852 -11.15684 -10.94810 -10.81764 -10.71626 -10.48999 -10.26699 -10.04383 -9.99651 -9.50886 -9.19149 -8.92120 -8.63551 -7.64110 -7.23308 -6.04546 -3.32565 1.07501 1.46230 2.21296 2.88955 3.30162 3.37851 3.39286 3.90088 4.04962 4.29534 4.52126 4.87312 4.97778 5.10825 5.18888 5.33005 5.46801 5.50320 5.67314 5.85670 6.01363 6.13371 6.16580 6.27848 6.33668 6.41691 6.58469 6.63488 6.89131 6.95315 6.96932 7.23366 7.34777 7.60456 7.85988 8.05375 8.89896 9.40818 9.60554 9.99768 11.06250 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.003765 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.334840 B = 7435.322868 C = 7632.416707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.002 3.998 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.084 0.916 9 N -0.562 5.562 10 C 0.160 3.840 11 C -0.080 4.080 12 C -0.187 4.187 13 C -0.011 4.011 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.054 4.054 17 Cl -0.087 7.087 18 C -0.104 4.104 19 C -0.106 4.106 20 C 0.187 3.813 21 C 0.475 3.525 22 O -0.508 6.508 23 O -0.545 6.545 24 H 0.259 0.741 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.669 -12.333 2.326 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.388 4.388 8 H 0.102 0.898 9 N -0.280 5.280 10 C 0.034 3.966 11 C -0.101 4.101 12 C -0.206 4.206 13 C -0.012 4.012 14 C -0.135 4.135 15 C -0.128 4.128 16 C -0.080 4.080 17 Cl -0.059 7.059 18 C -0.123 4.123 19 C -0.124 4.124 20 C 0.057 3.943 21 C 0.314 3.686 22 O -0.393 6.393 23 O -0.356 6.356 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.070 0.930 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.398 -12.207 2.493 12.465 hybrid contribution -0.561 0.896 1.005 1.458 sum -0.959 -11.311 3.498 11.878 Atomic orbital electron populations 1.69896 1.05342 1.26147 1.52976 1.24830 0.95220 0.98673 1.00898 0.86146 0.79063 0.82978 0.77773 1.21205 1.21892 1.20381 1.19374 0.96696 0.85006 1.37678 0.89807 1.44370 1.21889 1.01603 1.60155 1.20265 0.97358 0.86898 0.92069 1.24553 0.92047 0.92402 1.01072 1.21318 1.06327 0.97949 0.95038 1.19266 0.94957 0.93097 0.93857 1.21153 0.99484 0.95468 0.97433 1.20869 1.00842 0.99911 0.91144 1.20856 1.04116 0.95771 0.87278 1.98337 1.86504 1.85366 1.35665 1.20948 0.98409 0.93759 0.99170 1.21364 0.99650 1.00145 0.91245 1.20414 0.81001 1.02589 0.90247 1.25214 0.82655 0.70313 0.90380 1.90508 1.85062 1.45193 1.18568 1.84626 1.18100 1.86211 1.46620 0.93082 0.91370 0.92999 0.87171 0.87229 0.85395 0.85497 0.85360 0.84696 0.86688 0.92980 0.76473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.49 9.25 55.49 0.51 -23.97 16 2 C 0.00 0.06 4.85 -17.43 -0.08 -0.02 16 3 Si 0.91 20.66 29.62 -169.99 -5.04 15.62 16 4 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.26 -6.53 9.68 -15.06 -0.15 -6.67 16 8 H 0.08 2.06 7.92 -52.49 -0.42 1.64 16 9 N -0.56 -12.77 2.12 -175.98 -0.37 -13.15 16 10 C 0.16 2.98 6.15 -5.20 -0.03 2.95 16 11 C -0.08 -1.48 7.39 -36.22 -0.27 -1.75 16 12 C -0.19 -3.09 9.52 -37.58 -0.36 -3.45 16 13 C -0.01 -0.18 5.87 -105.02 -0.62 -0.80 16 14 C -0.12 -1.61 9.78 -39.20 -0.38 -1.99 16 15 C -0.11 -1.42 9.81 -39.60 -0.39 -1.81 16 16 C -0.05 -0.75 6.32 -39.41 -0.25 -0.99 16 17 Cl -0.09 -1.08 28.95 -51.86 -1.50 -2.58 16 18 C -0.10 -1.52 9.81 -39.60 -0.39 -1.91 16 19 C -0.11 -1.72 9.40 -39.20 -0.37 -2.09 16 20 C 0.19 4.15 5.55 -5.19 -0.03 4.12 16 21 C 0.48 11.01 6.51 36.01 0.23 11.24 16 22 O -0.51 -13.10 15.11 -18.75 -0.28 -13.39 16 23 O -0.55 -10.99 13.42 -39.25 -0.53 -11.52 16 24 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 25 H 0.07 1.19 8.03 -51.92 -0.42 0.78 16 26 H 0.05 0.85 7.60 -51.93 -0.39 0.45 16 27 H 0.11 2.27 6.04 -52.49 -0.32 1.96 16 28 H 0.11 1.61 7.87 -52.49 -0.41 1.20 16 29 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.14 2.29 6.17 -52.49 -0.32 1.96 16 33 H 0.12 2.78 6.27 -51.93 -0.33 2.45 16 34 H 0.05 0.98 7.94 -51.93 -0.41 0.57 16 35 H 0.38 6.24 9.10 45.56 0.41 6.66 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -29.61 319.87 -8.47 -38.08 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.01 Total: 9.26 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -3.08 Total: -3.18 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.14 Total: -37.12 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.81 Total: -24.90 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.04 Total: 15.62 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.58 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.61 -8.47 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.076 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds