Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00160 * 2 1 4 4 H 1.48505 * 109.46933 * 270.00054 * 3 2 1 5 5 H 1.48503 * 109.46627 * 29.99742 * 3 2 1 6 6 H 1.48491 * 109.47046 * 149.99731 * 3 2 1 7 7 C 1.38813 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99895 * 204.69816 * 7 2 1 9 9 N 1.36938 * 120.00462 * 24.69051 * 7 2 1 10 10 C 1.46492 * 120.00263 * 191.71954 * 9 7 2 11 11 C 1.50693 * 109.47579 * 90.00087 * 10 9 7 12 12 C 1.32575 * 120.00565 * 124.99898 * 11 10 9 13 13 C 1.47800 * 120.00346 * 180.02562 * 12 11 10 14 14 C 1.39539 * 120.12890 * 179.97438 * 13 12 11 15 15 C 1.37946 * 119.87322 * 179.97438 * 14 13 12 16 16 C 1.38469 * 120.12563 * 0.27808 * 15 14 13 17 17 Cl 1.73600 * 119.86698 * 179.72248 * 16 15 14 18 18 C 1.38461 * 120.25866 * 359.44474 * 16 15 14 19 19 C 1.37952 * 120.12608 * 0.55491 * 18 16 15 20 20 C 1.46504 * 119.99594 * 11.71954 * 9 7 2 21 21 C 1.50703 * 109.47026 * 266.47352 * 20 9 7 22 22 O 1.20824 * 119.99897 * 359.97438 * 21 20 9 23 23 O 1.34228 * 119.99602 * 180.02562 * 21 20 9 24 24 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47106 * 329.99620 * 10 9 7 26 26 H 1.09000 * 109.47382 * 210.00465 * 10 9 7 27 27 H 1.08002 * 119.99765 * 305.00120 * 11 10 9 28 28 H 1.08002 * 119.99670 * 0.02562 * 12 11 10 29 29 H 1.08004 * 120.06796 * 359.95648 * 14 13 12 30 30 H 1.08003 * 119.94101 * 179.97438 * 15 14 13 31 31 H 1.08003 * 119.93907 * 180.25178 * 18 16 15 32 32 H 1.08001 * 120.05966 * 179.74757 * 19 18 16 33 33 H 1.09004 * 109.46964 * 26.47387 * 20 9 7 34 34 H 1.08999 * 109.47037 * 146.47381 * 20 9 7 35 35 H 0.96701 * 116.99540 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0162 -1.2451 0.3903 9 7 1.4195 -2.3337 -0.4964 10 6 2.0369 -3.6424 -0.2684 11 6 1.5069 -4.2315 1.0134 12 6 0.9527 -5.4359 1.0102 13 6 0.4324 -6.0133 2.2673 14 6 -0.1519 -7.2805 2.2668 15 6 -0.6354 -7.8146 3.4432 16 6 -0.5468 -7.0935 4.6220 17 17 -1.1639 -7.7691 6.0972 18 6 0.0371 -5.8380 4.6296 19 6 0.5240 -5.2937 3.4593 20 6 0.1700 -2.2354 -1.2550 21 6 -0.9993 -2.4284 -0.3241 22 8 -0.8085 -2.6281 0.8522 23 8 -2.2527 -2.3794 -0.8019 24 1 -0.4850 0.8400 -0.0004 25 1 3.1183 -3.5262 -0.1950 26 1 1.7985 -4.3064 -1.0992 27 1 1.5786 -3.6725 1.9347 28 1 0.8814 -5.9950 0.0889 29 1 -0.2259 -7.8420 1.3472 30 1 -1.0882 -8.7951 3.4440 31 1 0.1071 -5.2817 5.5527 32 1 0.9756 -4.3127 3.4658 33 1 0.1047 -1.2524 -1.7216 34 1 0.1516 -3.0055 -2.0261 35 1 -2.9701 -2.5086 -0.1665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184657.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -47.558104 kcal Electronic energy + Delta-G solvation = -21066.808784 eV Core-core repulsion = 17670.177474 eV Total energy + Delta-G solvation = -3396.631311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50767 -40.21670 -37.91047 -37.43585 -36.19539 -35.19861 -33.15613 -32.07858 -30.85066 -29.10577 -27.11579 -24.55182 -23.90822 -22.82733 -21.76263 -20.24656 -18.75070 -18.39285 -18.25992 -17.15851 -16.90222 -16.53809 -16.14294 -15.93836 -15.41496 -15.29009 -14.78231 -14.51148 -14.42774 -14.18677 -13.64246 -13.34271 -13.08356 -12.93262 -12.70409 -12.61577 -12.42210 -12.30790 -12.15812 -12.06158 -11.85594 -11.77173 -11.65895 -11.00826 -10.73028 -10.51168 -10.03402 -9.10357 -8.83755 -7.97643 -5.25536 -0.11578 0.34453 1.13767 1.49072 1.51168 1.58438 1.63539 2.11849 2.50316 2.83421 2.87502 3.25247 3.62899 3.79483 3.92365 3.94257 4.29162 4.35168 4.43053 4.59682 4.70183 4.76699 4.83367 4.99128 5.03599 5.17805 5.22374 5.25041 5.33359 5.44582 5.63326 5.79221 5.86459 6.04646 6.20973 6.23924 7.02210 7.64300 7.83867 8.14723 9.11375 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021074 B = 0.003765 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.334840 B = 7435.322868 C = 7632.416707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.047 4.047 3 Si 0.967 3.033 4 H -0.280 1.280 5 H -0.306 1.306 6 H -0.273 1.273 7 C -0.260 4.260 8 H 0.083 0.917 9 N -0.576 5.576 10 C 0.160 3.840 11 C -0.107 4.107 12 C -0.161 4.161 13 C -0.040 4.040 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.055 4.055 17 Cl -0.072 7.072 18 C -0.114 4.114 19 C -0.123 4.123 20 C 0.185 3.815 21 C 0.476 3.524 22 O -0.540 6.540 23 O -0.539 6.539 24 H 0.249 0.751 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -14.715 1.804 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.233 1.233 6 H -0.198 1.198 7 C -0.389 4.389 8 H 0.101 0.899 9 N -0.295 5.295 10 C 0.036 3.964 11 C -0.128 4.128 12 C -0.180 4.180 13 C -0.040 4.040 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.081 4.081 17 Cl -0.043 7.043 18 C -0.133 4.133 19 C -0.141 4.141 20 C 0.056 3.944 21 C 0.317 3.683 22 O -0.428 6.428 23 O -0.351 6.351 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.154 0.846 29 H 0.176 0.824 30 H 0.175 0.825 31 H 0.154 0.846 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.666 -14.622 1.965 14.768 hybrid contribution -0.538 1.434 1.270 1.989 sum -1.204 -13.188 3.235 13.633 Atomic orbital electron populations 1.70041 1.06356 1.25721 1.55234 1.25442 0.95836 1.01119 1.01860 0.85261 0.77894 0.79590 0.77615 1.20696 1.23347 1.19765 1.19630 0.96809 0.86255 1.36208 0.89912 1.44469 1.22145 1.02599 1.60242 1.20401 0.97377 0.85597 0.93061 1.24195 0.95069 0.93621 0.99891 1.21588 1.03205 0.97004 0.96202 1.19423 0.96731 0.94468 0.93403 1.21473 0.97754 0.94343 0.98935 1.21234 0.99975 1.00891 0.90375 1.21036 1.03285 0.95434 0.88376 1.98345 1.86175 1.84979 1.34839 1.21054 0.98677 0.94536 0.99016 1.21335 1.00550 0.99750 0.92487 1.20425 0.80721 1.02558 0.90683 1.25399 0.83518 0.69393 0.89985 1.90503 1.85696 1.46779 1.19853 1.84563 1.17877 1.85682 1.46929 0.94164 0.90819 0.90062 0.90449 0.84616 0.82441 0.82528 0.84577 0.86829 0.88974 0.89303 0.74535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.67 9.25 21.65 0.20 -51.47 16 2 C -0.05 -2.50 4.85 84.86 0.41 -2.09 16 3 Si 0.97 43.34 29.62 68.60 2.03 45.37 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.31 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.26 -13.24 9.68 84.03 0.81 -12.42 16 8 H 0.08 4.12 7.92 -2.91 -0.02 4.10 16 9 N -0.58 -26.09 2.12 -710.69 -1.51 -27.59 16 10 C 0.16 5.82 6.15 85.63 0.53 6.35 16 11 C -0.11 -3.98 7.39 24.53 0.18 -3.80 16 12 C -0.16 -5.08 9.52 23.65 0.23 -4.85 16 13 C -0.04 -1.23 5.87 -20.12 -0.12 -1.35 16 14 C -0.11 -2.61 9.78 22.51 0.22 -2.39 16 15 C -0.11 -2.43 9.81 22.26 0.22 -2.21 16 16 C -0.05 -1.41 6.32 22.38 0.14 -1.27 16 17 Cl -0.07 -1.63 28.95 -2.72 -0.08 -1.70 16 18 C -0.11 -3.30 9.81 22.26 0.22 -3.08 16 19 C -0.12 -4.05 9.40 22.52 0.21 -3.84 16 20 C 0.19 8.12 5.55 85.63 0.48 8.60 16 21 C 0.48 21.93 6.51 71.24 0.46 22.39 16 22 O -0.54 -28.20 15.11 21.97 0.33 -27.87 16 23 O -0.54 -21.20 13.42 -51.39 -0.69 -21.89 16 24 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 25 H 0.07 2.53 8.03 -2.38 -0.02 2.51 16 26 H 0.08 2.43 7.60 -2.39 -0.02 2.41 16 27 H 0.08 3.38 6.04 -2.91 -0.02 3.37 16 28 H 0.14 3.52 7.87 -2.91 -0.02 3.50 16 29 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 30 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.11 4.16 6.17 -2.91 -0.02 4.14 16 33 H 0.09 4.49 6.27 -2.38 -0.01 4.47 16 34 H 0.09 3.16 7.94 -2.39 -0.02 3.14 16 35 H 0.40 12.62 9.10 -74.06 -0.67 11.95 16 Total: -1.00 -64.34 319.87 4.73 -59.61 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 0.45 Total: 25.51 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 3.99 Total: 0.04 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.31 Total: -79.06 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.36 Total: -49.76 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.08 Total: -1.70 kcal Total: -64.34 4.73 -59.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184657.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.050 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds