Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48499 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47145 * 300.00271 * 3 2 1 6 6 H 1.48491 * 109.47007 * 60.00310 * 3 2 1 7 7 C 1.38810 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 188.53013 * 7 2 1 9 9 N 1.36933 * 120.00292 * 8.52974 * 7 2 1 10 10 C 1.46500 * 119.99915 * 202.05076 * 9 7 2 11 11 C 1.50696 * 109.47217 * 89.99789 * 10 9 7 12 12 C 1.32572 * 119.99971 * 126.63294 * 11 10 9 13 13 C 1.47804 * 120.00343 * 7.61631 * 12 11 10 14 14 C 1.39542 * 120.12696 * 37.56255 * 13 12 11 15 15 C 1.37950 * 119.87013 * 180.02562 * 14 13 12 16 16 C 1.38458 * 120.13021 * 0.26438 * 15 14 13 17 17 Cl 1.73593 * 119.87456 * 179.72101 * 16 15 14 18 18 C 1.38475 * 120.25771 * 359.48122 * 16 15 14 19 19 C 1.37942 * 120.12525 * 0.51584 * 18 16 15 20 20 C 1.46497 * 120.00198 * 22.04936 * 9 7 2 21 21 C 1.50705 * 109.46871 * 264.71791 * 20 9 7 22 22 O 1.20823 * 120.00140 * 359.97438 * 21 20 9 23 23 O 1.34233 * 119.99867 * 179.97438 * 21 20 9 24 24 H 0.96997 * 120.00399 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47271 * 329.99415 * 10 9 7 26 26 H 1.09001 * 109.47048 * 210.00036 * 10 9 7 27 27 H 1.07993 * 120.00165 * 306.63089 * 11 10 9 28 28 H 1.08005 * 119.99912 * 187.61461 * 12 11 10 29 29 H 1.07996 * 120.06723 * 0.05183 * 14 13 12 30 30 H 1.08002 * 119.93601 * 179.97438 * 15 14 13 31 31 H 1.08002 * 119.93796 * 180.23838 * 18 16 15 32 32 H 1.07998 * 120.06565 * 179.76791 * 19 18 16 33 33 H 1.09009 * 109.47184 * 24.71344 * 20 9 7 34 34 H 1.08997 * 109.47490 * 144.71630 * 20 9 7 35 35 H 0.96697 * 116.99717 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0812 -1.2074 0.1382 9 7 1.3369 -2.3814 -0.1770 10 6 1.9283 -3.6390 0.2867 11 6 1.5026 -3.9002 1.7085 12 6 0.9393 -5.0565 2.0299 13 6 0.8808 -6.1511 1.0384 14 6 1.9503 -6.3657 0.1681 15 6 1.8899 -7.3885 -0.7555 16 6 0.7686 -8.1979 -0.8239 17 17 0.6966 -9.4785 -1.9936 18 6 -0.2936 -7.9931 0.0406 19 6 -0.2444 -6.9734 0.9684 20 6 0.0252 -2.3855 -0.8293 21 6 -1.0571 -2.3476 0.2188 22 8 -0.7629 -2.3204 1.3904 23 8 -2.3480 -2.3440 -0.1493 24 1 -0.4850 0.8400 0.0004 25 1 3.0150 -3.5685 0.2399 26 1 1.5896 -4.4563 -0.3501 27 1 1.6564 -3.1456 2.4655 28 1 0.5231 -5.1986 3.0164 29 1 2.8238 -5.7325 0.2179 30 1 2.7168 -7.5553 -1.4299 31 1 -1.1641 -8.6300 -0.0146 32 1 -1.0749 -6.8122 1.6397 33 1 -0.0627 -1.5110 -1.4741 34 1 -0.0802 -3.2904 -1.4278 35 1 -3.0062 -2.3195 0.5586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -24.947855 kcal Electronic energy + Delta-G solvation = -21517.977020 eV Core-core repulsion = 18122.326163 eV Total energy + Delta-G solvation = -3395.650857 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.36420 -38.62952 -36.65698 -35.98513 -34.43333 -33.75524 -31.30229 -30.95191 -29.16645 -27.44392 -25.79738 -23.05060 -22.48699 -21.72175 -20.04792 -18.84923 -17.05954 -16.73759 -16.44297 -15.68752 -15.33951 -15.09966 -14.85766 -14.28908 -14.08621 -13.62292 -13.52346 -13.36097 -12.95064 -12.75680 -12.20545 -11.92465 -11.55471 -11.42464 -11.26861 -11.09482 -10.89726 -10.76820 -10.69197 -10.47399 -10.17775 -10.09785 -9.96580 -9.24141 -9.13479 -8.85931 -8.66082 -7.74941 -7.10092 -6.00243 -3.41201 1.11982 1.41972 2.19575 2.87278 3.29759 3.36414 3.38583 3.88722 3.95940 4.32129 4.55006 4.90515 4.95667 5.13075 5.27733 5.32599 5.44945 5.52067 5.74000 5.87337 6.02417 6.05749 6.30158 6.31998 6.37635 6.39245 6.56717 6.73936 6.90810 6.97425 7.06431 7.26517 7.37846 7.60152 7.89728 8.14830 8.94976 9.45271 9.63130 10.04533 11.09687 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.004269 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.384590 B = 6557.283757 C = 6872.011503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.004 3.996 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.081 0.919 9 N -0.562 5.562 10 C 0.146 3.854 11 C -0.077 4.077 12 C -0.193 4.193 13 C -0.016 4.016 14 C -0.106 4.106 15 C -0.109 4.109 16 C -0.049 4.049 17 Cl -0.086 7.086 18 C -0.110 4.110 19 C -0.109 4.109 20 C 0.193 3.807 21 C 0.481 3.519 22 O -0.514 6.514 23 O -0.545 6.545 24 H 0.259 0.741 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.138 0.862 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.118 0.882 34 H 0.045 0.955 35 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 -13.599 -1.404 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.194 4.194 3 Si 0.748 3.252 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.098 0.902 9 N -0.281 5.281 10 C 0.021 3.979 11 C -0.098 4.098 12 C -0.213 4.213 13 C -0.017 4.017 14 C -0.125 4.125 15 C -0.128 4.128 16 C -0.075 4.075 17 Cl -0.057 7.057 18 C -0.128 4.128 19 C -0.128 4.128 20 C 0.064 3.936 21 C 0.321 3.679 22 O -0.400 6.400 23 O -0.355 6.355 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.063 0.937 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.607 -13.534 -1.543 13.635 hybrid contribution -0.444 1.086 0.821 1.432 sum 0.163 -12.448 -0.721 12.470 Atomic orbital electron populations 1.69644 1.05385 1.25900 1.54543 1.25034 0.95491 0.98712 1.00159 0.85972 0.78979 0.82978 0.77296 1.20147 1.21435 1.21664 1.19413 0.91204 0.83151 1.44666 0.90157 1.44133 1.16116 1.03082 1.64745 1.20796 0.97543 0.89226 0.90334 1.24325 0.91948 0.94144 0.99369 1.21253 1.07806 0.93945 0.98251 1.19268 0.92981 0.94577 0.94824 1.21462 0.99221 0.96697 0.95077 1.20946 0.97063 0.95056 0.99696 1.20873 0.97419 0.93942 0.95275 1.98343 1.98529 1.50462 1.58355 1.20903 0.97665 0.98801 0.95463 1.21217 0.97991 0.94785 0.98766 1.20238 0.81135 1.01175 0.91023 1.25061 0.81264 0.69735 0.91819 1.90482 1.82449 1.46207 1.20883 1.84632 1.19044 1.87365 1.44434 0.93069 0.91998 0.91808 0.87021 0.87309 0.84461 0.85174 0.85442 0.85422 0.86454 0.93674 0.76619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.98 8.69 55.49 0.48 -24.50 16 2 C 0.00 0.10 5.15 -17.43 -0.09 0.01 16 3 Si 0.92 21.00 29.56 -169.99 -5.03 15.97 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.53 9.69 -15.06 -0.15 -6.67 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.56 -13.16 2.15 -175.98 -0.38 -13.53 16 10 C 0.15 2.83 4.45 -5.20 -0.02 2.81 16 11 C -0.08 -1.47 7.74 -36.22 -0.28 -1.75 16 12 C -0.19 -3.27 9.79 -37.58 -0.37 -3.64 16 13 C -0.02 -0.25 5.18 -105.01 -0.54 -0.79 16 14 C -0.11 -1.48 7.29 -39.20 -0.29 -1.77 16 15 C -0.11 -1.39 9.81 -39.61 -0.39 -1.78 16 16 C -0.05 -0.63 6.32 -39.41 -0.25 -0.88 16 17 Cl -0.09 -1.00 28.95 -51.86 -1.50 -2.50 16 18 C -0.11 -1.39 9.81 -39.60 -0.39 -1.78 16 19 C -0.11 -1.51 9.78 -39.20 -0.38 -1.90 16 20 C 0.19 4.46 5.53 -5.19 -0.03 4.44 16 21 C 0.48 11.41 6.37 36.01 0.23 11.64 16 22 O -0.51 -13.44 14.81 -18.75 -0.28 -13.72 16 23 O -0.54 -11.20 13.42 -39.26 -0.53 -11.73 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.06 1.12 7.90 -51.93 -0.41 0.71 16 26 H 0.06 1.15 4.51 -51.93 -0.23 0.91 16 27 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 28 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.14 1.80 6.27 -52.49 -0.33 1.48 16 30 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.12 2.93 6.40 -51.92 -0.33 2.60 16 34 H 0.05 0.93 7.97 -51.93 -0.41 0.52 16 35 H 0.38 6.26 9.10 45.56 0.41 6.68 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -29.69 314.41 -8.40 -38.10 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -2.97 Total: 9.23 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -2.95 Total: -2.06 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.10 Total: -38.03 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.80 Total: -25.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.69 -8.40 -38.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.148 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds