Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48499 * 109.47087 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47145 * 300.00271 * 3 2 1 6 6 H 1.48491 * 109.47007 * 60.00310 * 3 2 1 7 7 C 1.38810 * 119.99851 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 188.53013 * 7 2 1 9 9 N 1.36933 * 120.00292 * 8.52974 * 7 2 1 10 10 C 1.46500 * 119.99915 * 202.05076 * 9 7 2 11 11 C 1.50696 * 109.47217 * 89.99789 * 10 9 7 12 12 C 1.32572 * 119.99971 * 126.63294 * 11 10 9 13 13 C 1.47804 * 120.00343 * 7.61631 * 12 11 10 14 14 C 1.39542 * 120.12696 * 37.56255 * 13 12 11 15 15 C 1.37950 * 119.87013 * 180.02562 * 14 13 12 16 16 C 1.38458 * 120.13021 * 0.26438 * 15 14 13 17 17 Cl 1.73593 * 119.87456 * 179.72101 * 16 15 14 18 18 C 1.38475 * 120.25771 * 359.48122 * 16 15 14 19 19 C 1.37942 * 120.12525 * 0.51584 * 18 16 15 20 20 C 1.46497 * 120.00198 * 22.04936 * 9 7 2 21 21 C 1.50705 * 109.46871 * 264.71791 * 20 9 7 22 22 O 1.20823 * 120.00140 * 359.97438 * 21 20 9 23 23 O 1.34233 * 119.99867 * 179.97438 * 21 20 9 24 24 H 0.96997 * 120.00399 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47271 * 329.99415 * 10 9 7 26 26 H 1.09001 * 109.47048 * 210.00036 * 10 9 7 27 27 H 1.07993 * 120.00165 * 306.63089 * 11 10 9 28 28 H 1.08005 * 119.99912 * 187.61461 * 12 11 10 29 29 H 1.07996 * 120.06723 * 0.05183 * 14 13 12 30 30 H 1.08002 * 119.93601 * 179.97438 * 15 14 13 31 31 H 1.08002 * 119.93796 * 180.23838 * 18 16 15 32 32 H 1.07998 * 120.06565 * 179.76791 * 19 18 16 33 33 H 1.09009 * 109.47184 * 24.71344 * 20 9 7 34 34 H 1.08997 * 109.47490 * 144.71630 * 20 9 7 35 35 H 0.96697 * 116.99717 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0812 -1.2074 0.1382 9 7 1.3369 -2.3814 -0.1770 10 6 1.9283 -3.6390 0.2867 11 6 1.5026 -3.9002 1.7085 12 6 0.9393 -5.0565 2.0299 13 6 0.8808 -6.1511 1.0384 14 6 1.9503 -6.3657 0.1681 15 6 1.8899 -7.3885 -0.7555 16 6 0.7686 -8.1979 -0.8239 17 17 0.6966 -9.4785 -1.9936 18 6 -0.2936 -7.9931 0.0406 19 6 -0.2444 -6.9734 0.9684 20 6 0.0252 -2.3855 -0.8293 21 6 -1.0571 -2.3476 0.2188 22 8 -0.7629 -2.3204 1.3904 23 8 -2.3480 -2.3440 -0.1493 24 1 -0.4850 0.8400 0.0004 25 1 3.0150 -3.5685 0.2399 26 1 1.5896 -4.4563 -0.3501 27 1 1.6564 -3.1456 2.4655 28 1 0.5231 -5.1986 3.0164 29 1 2.8238 -5.7325 0.2179 30 1 2.7168 -7.5553 -1.4299 31 1 -1.1641 -8.6300 -0.0146 32 1 -1.0749 -6.8122 1.6397 33 1 -0.0627 -1.5110 -1.4741 34 1 -0.0802 -3.2904 -1.4278 35 1 -3.0062 -2.3195 0.5586 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184659.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -40.627051 kcal Electronic energy + Delta-G solvation = -21518.656921 eV Core-core repulsion = 18122.326163 eV Total energy + Delta-G solvation = -3396.330758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63238 -40.26411 -37.95698 -37.32388 -36.18775 -35.26592 -33.01224 -32.06612 -30.47498 -29.15933 -27.44886 -24.60607 -23.57309 -23.11562 -21.81108 -20.15893 -18.84388 -18.41548 -17.79063 -17.16508 -16.90919 -16.60374 -16.14726 -15.93436 -15.64470 -15.29983 -14.66088 -14.59543 -14.26340 -14.10556 -13.76456 -13.32064 -13.20604 -12.93472 -12.73057 -12.51273 -12.38827 -12.28255 -12.11922 -11.92194 -11.84508 -11.75572 -11.66556 -11.00772 -10.63418 -10.39838 -9.90928 -8.99596 -8.94556 -7.95485 -5.37068 -0.00289 0.39024 1.20666 1.45817 1.49689 1.55122 1.59571 2.12606 2.48909 2.79006 2.83945 3.31853 3.64872 3.89947 3.91958 3.99689 4.30245 4.41971 4.50161 4.55912 4.67092 4.75615 4.86700 5.02946 5.13838 5.19668 5.23142 5.29945 5.33140 5.52841 5.60675 5.78150 5.90642 5.97838 6.20982 6.28413 7.03810 7.63817 7.83274 8.16036 9.12494 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022316 B = 0.004269 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.384590 B = 6557.283757 C = 6872.011503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.303 1.303 7 C -0.258 4.258 8 H 0.084 0.916 9 N -0.577 5.577 10 C 0.152 3.848 11 C -0.106 4.106 12 C -0.163 4.163 13 C -0.042 4.042 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.050 4.050 17 Cl -0.072 7.072 18 C -0.109 4.109 19 C -0.111 4.111 20 C 0.193 3.807 21 C 0.483 3.517 22 O -0.544 6.544 23 O -0.539 6.539 24 H 0.249 0.751 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.142 0.858 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 -15.483 -2.230 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.231 1.231 7 C -0.387 4.387 8 H 0.102 0.898 9 N -0.296 5.296 10 C 0.028 3.972 11 C -0.127 4.127 12 C -0.182 4.182 13 C -0.042 4.042 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.076 4.076 17 Cl -0.043 7.043 18 C -0.128 4.128 19 C -0.129 4.129 20 C 0.064 3.936 21 C 0.324 3.676 22 O -0.432 6.432 23 O -0.350 6.350 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.160 0.840 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.089 0.911 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 0.779 -15.455 -2.375 15.656 hybrid contribution -0.543 1.432 1.063 1.864 sum 0.237 -14.024 -1.312 14.087 Atomic orbital electron populations 1.69801 1.06405 1.25543 1.56429 1.25691 0.96201 1.01360 1.00966 0.85070 0.78588 0.79584 0.76314 1.18810 1.21499 1.23099 1.19705 0.91647 0.84228 1.43138 0.89836 1.44258 1.16188 1.03688 1.65456 1.20863 0.97797 0.87927 0.90578 1.23942 0.95358 0.94579 0.98784 1.21394 1.04454 0.93576 0.98800 1.19253 0.94503 0.94950 0.95540 1.21546 0.99063 0.97157 0.94901 1.21167 0.97708 0.94401 0.99491 1.21072 0.97350 0.93980 0.95218 1.98354 1.98488 1.49750 1.57749 1.21133 0.98365 0.98522 0.94754 1.21358 0.97800 0.94630 0.99148 1.20194 0.81247 1.01273 0.90889 1.25154 0.82095 0.68917 0.91408 1.90470 1.83119 1.47633 1.22009 1.84561 1.18522 1.86785 1.45137 0.94125 0.91133 0.90107 0.90193 0.86888 0.84013 0.83169 0.83326 0.84517 0.88675 0.91071 0.74465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.26 8.69 21.65 0.19 -52.07 16 2 C -0.05 -2.53 5.15 84.86 0.44 -2.10 16 3 Si 0.98 43.73 29.56 68.60 2.03 45.76 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.26 -13.23 9.69 84.03 0.81 -12.42 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.58 -26.95 2.15 -710.69 -1.53 -28.48 16 10 C 0.15 5.82 4.45 85.63 0.38 6.20 16 11 C -0.11 -4.09 7.74 24.53 0.19 -3.90 16 12 C -0.16 -5.41 9.79 23.65 0.23 -5.18 16 13 C -0.04 -1.21 5.18 -20.12 -0.10 -1.31 16 14 C -0.11 -2.79 7.29 22.52 0.16 -2.62 16 15 C -0.11 -2.47 9.81 22.25 0.22 -2.26 16 16 C -0.05 -1.13 6.32 22.38 0.14 -0.98 16 17 Cl -0.07 -1.46 28.95 -2.72 -0.08 -1.54 16 18 C -0.11 -2.45 9.81 22.26 0.22 -2.23 16 19 C -0.11 -2.82 9.78 22.52 0.22 -2.60 16 20 C 0.19 8.87 5.53 85.64 0.47 9.34 16 21 C 0.48 22.81 6.37 71.24 0.45 23.26 16 22 O -0.54 -28.67 14.81 21.97 0.33 -28.34 16 23 O -0.54 -21.64 13.42 -51.44 -0.69 -22.34 16 24 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 25 H 0.07 2.51 7.90 -2.39 -0.02 2.49 16 26 H 0.08 2.78 4.51 -2.39 -0.01 2.77 16 27 H 0.08 3.58 8.06 -2.91 -0.02 3.55 16 28 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 29 H 0.14 3.47 6.27 -2.91 -0.02 3.45 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 32 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.10 4.81 6.40 -2.38 -0.02 4.80 16 34 H 0.07 2.83 7.97 -2.39 -0.02 2.81 16 35 H 0.40 12.68 9.10 -74.06 -0.67 12.00 16 Total: -1.00 -63.16 314.41 4.54 -58.62 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.45 Total: 25.17 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 3.84 Total: 3.22 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.34 Total: -80.55 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.37 Total: -50.68 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -63.16 4.54 -58.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184659.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.995 kcal (2) G-P(sol) polarization free energy of solvation -63.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds