Wall clock time and date at job start Tue Mar 31 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46757 * 269.99560 * 3 2 1 5 5 H 1.48498 * 109.47060 * 29.99433 * 3 2 1 6 6 H 1.48495 * 109.47207 * 150.00020 * 3 2 1 7 7 C 1.38813 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99287 * 188.06180 * 7 2 1 9 9 N 1.36935 * 120.00445 * 8.05761 * 7 2 1 10 10 C 1.46506 * 119.99486 * 45.27231 * 9 7 2 11 11 C 1.50697 * 109.47397 * 84.98504 * 10 9 7 12 12 C 1.38088 * 120.08111 * 268.12435 * 11 10 9 13 13 Cl 1.73600 * 119.94196 * 0.02562 * 12 11 10 14 14 C 1.38459 * 120.12090 * 180.02562 * 12 11 10 15 15 C 1.38370 * 120.29171 * 359.97231 * 14 12 11 16 16 C 1.37925 * 120.16312 * 0.02937 * 15 14 12 17 17 C 1.39595 * 120.08282 * 87.84499 * 11 10 9 18 18 C 1.47723 * 120.14392 * 359.97438 * 17 11 10 19 19 O 1.21476 * 119.99957 * 5.16749 * 18 17 11 20 20 O 1.34707 * 120.00043 * 185.16204 * 18 17 11 21 21 C 1.46498 * 120.00187 * 225.26601 * 9 7 2 22 22 C 1.53001 * 117.49915 * 3.19517 * 21 9 7 23 23 C 1.53000 * 117.50056 * 294.57041 * 21 9 7 24 24 H 0.97001 * 120.00100 * 4.99920 * 1 2 3 25 25 H 1.09000 * 109.46417 * 204.98252 * 10 9 7 26 26 H 1.08995 * 109.46902 * 324.98140 * 10 9 7 27 27 H 1.07997 * 119.85683 * 179.97438 * 14 12 11 28 28 H 1.08001 * 119.91678 * 179.97438 * 15 14 12 29 29 H 1.07999 * 120.06584 * 179.97438 * 16 15 14 30 30 H 0.96703 * 117.00332 * 179.97438 * 20 18 17 31 31 H 1.09006 * 115.54837 * 148.89553 * 21 9 7 32 32 H 1.08996 * 117.49848 * 359.97438 * 22 21 9 33 33 H 1.09002 * 117.49996 * 145.02083 * 22 21 9 34 34 H 1.09000 * 117.49283 * 214.98221 * 23 21 9 35 35 H 1.08996 * 117.49997 * 359.97304 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0823 -1.2067 0.1317 9 7 1.3357 -2.3823 -0.1652 10 6 0.3149 -2.5021 -1.2092 11 6 0.9729 -2.8613 -2.5164 12 6 1.3655 -1.8666 -3.3900 13 17 1.1011 -0.2003 -2.9811 14 6 1.9697 -2.1957 -4.5915 15 6 2.1846 -3.5214 -4.9246 16 6 1.7972 -4.5245 -4.0609 17 6 1.1924 -4.2003 -2.8446 18 6 0.7813 -5.2697 -1.9121 19 8 0.1674 -4.9914 -0.9015 20 8 1.0870 -6.5534 -2.1826 21 6 1.6350 -3.5250 0.7014 22 6 2.6570 -3.3145 1.8203 23 6 3.0278 -4.1487 0.5924 24 1 -0.4850 0.8369 -0.0732 25 1 -0.3962 -3.2812 -0.9342 26 1 -0.2095 -1.5525 -1.3152 27 1 2.2747 -1.4143 -5.2718 28 1 2.6560 -3.7713 -5.8636 29 1 1.9653 -5.5587 -4.3227 30 1 0.7972 -7.2180 -1.5426 31 1 0.7983 -4.1940 0.9029 32 1 3.1071 -2.3260 1.9114 33 1 2.4929 -3.8451 2.7582 34 1 3.1075 -5.2279 0.7224 35 1 3.7214 -3.7091 -0.1244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:18 Heat of formation + Delta-G solvation = -7.960554 kcal Electronic energy + Delta-G solvation = -22589.559892 eV Core-core repulsion = 19194.645660 eV Total energy + Delta-G solvation = -3394.914232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15977 -38.33336 -36.85078 -35.68906 -35.53599 -33.57157 -31.62296 -30.71178 -29.51170 -25.87377 -24.30728 -23.23686 -21.61744 -21.30433 -20.41612 -19.75830 -17.77210 -17.03931 -16.20836 -15.59451 -15.39883 -15.25109 -14.74073 -14.39304 -14.27424 -13.71343 -13.31631 -13.09701 -12.69637 -12.39588 -11.84700 -11.64466 -11.44075 -11.23600 -11.06806 -11.03041 -10.78539 -10.61158 -10.56246 -10.32766 -10.08971 -9.80693 -9.53175 -9.16069 -9.00835 -8.52467 -8.34565 -8.04367 -6.42028 -5.68251 -3.47074 1.05741 1.68084 2.87981 2.94140 3.33884 3.40660 3.41467 3.48461 4.08870 4.46159 5.05542 5.12235 5.23938 5.33861 5.43943 5.47189 5.57960 5.78795 6.02855 6.06427 6.15212 6.26811 6.38820 6.50564 6.51396 6.56792 6.68598 6.72423 6.78098 7.08733 7.15721 7.25670 7.36291 7.71764 7.87057 8.35598 8.58802 9.22065 9.79519 10.41653 11.21367 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.009070 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.222598 B = 3086.277211 C = 4313.246555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.257 4.257 8 H 0.054 0.946 9 N -0.529 5.529 10 C 0.141 3.859 11 C -0.001 4.001 12 C -0.036 4.036 13 Cl -0.035 7.035 14 C -0.088 4.088 15 C -0.148 4.148 16 C -0.070 4.070 17 C -0.124 4.124 18 C 0.523 3.477 19 O -0.486 6.486 20 O -0.522 6.522 21 C 0.142 3.858 22 C -0.193 4.193 23 C -0.235 4.235 24 H 0.255 0.745 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.407 0.593 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.777 -8.532 -8.252 12.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.161 4.161 3 Si 0.708 3.292 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.387 4.387 8 H 0.072 0.928 9 N -0.243 5.243 10 C 0.016 3.984 11 C -0.006 4.006 12 C -0.064 4.064 13 Cl -0.005 7.005 14 C -0.107 4.107 15 C -0.166 4.166 16 C -0.088 4.088 17 C -0.127 4.127 18 C 0.367 3.633 19 O -0.374 6.374 20 O -0.335 6.335 21 C 0.034 3.966 22 C -0.231 4.231 23 C -0.276 4.276 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.149 0.851 30 H 0.264 0.736 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.535 -7.799 -8.083 11.336 hybrid contribution 0.714 0.570 0.278 0.955 sum 2.249 -7.228 -7.806 10.874 Atomic orbital electron populations 1.69811 1.05348 1.25807 1.50438 1.25227 0.94918 0.97922 0.98017 0.86640 0.79864 0.84428 0.78249 1.20588 1.21539 1.20074 1.18832 0.90125 0.83393 1.46365 0.92796 1.43050 1.43706 1.07850 1.29675 1.20852 0.91501 1.04678 0.81342 1.21360 0.93061 0.89291 0.96935 1.20787 1.02688 0.87778 0.95134 1.98413 1.94805 1.14074 1.93255 1.21274 0.97083 0.97002 0.95344 1.20829 1.03479 0.91951 1.00383 1.21348 0.95138 0.99733 0.92631 1.18732 1.07492 0.91122 0.95322 1.20875 0.76536 0.81424 0.84420 1.90826 1.37727 1.82187 1.26637 1.84545 1.76236 1.18028 1.54644 1.21345 0.89406 0.92153 0.93717 1.23029 1.07021 1.01161 0.91929 1.23365 1.05426 0.96665 1.02101 0.93451 0.90035 0.86676 0.85454 0.85465 0.85150 0.73579 0.88207 0.88397 0.90866 0.91490 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.84 10.93 55.49 0.61 -23.23 16 2 C 0.04 1.09 3.17 -17.43 -0.06 1.03 16 3 Si 0.88 21.21 28.86 -169.99 -4.91 16.30 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.26 -6.80 7.62 -15.06 -0.11 -6.91 16 8 H 0.05 1.49 7.25 -52.48 -0.38 1.11 16 9 N -0.53 -13.09 2.72 -167.02 -0.45 -13.55 16 10 C 0.14 3.34 4.64 -5.19 -0.02 3.32 16 11 C 0.00 -0.03 5.47 -104.17 -0.57 -0.60 16 12 C -0.04 -0.71 6.31 -39.56 -0.25 -0.96 16 13 Cl -0.03 -0.74 23.58 -51.86 -1.22 -1.96 16 14 C -0.09 -1.39 9.82 -39.45 -0.39 -1.78 16 15 C -0.15 -2.04 10.03 -39.65 -0.40 -2.43 16 16 C -0.07 -1.04 9.62 -39.17 -0.38 -1.41 16 17 C -0.12 -2.23 5.87 -104.99 -0.62 -2.85 16 18 C 0.52 8.91 8.15 34.61 0.28 9.19 16 19 O -0.49 -9.44 10.57 -19.25 -0.20 -9.64 16 20 O -0.52 -6.70 12.69 -40.51 -0.51 -7.21 16 21 C 0.14 3.22 5.12 -67.93 -0.35 2.87 16 22 C -0.19 -4.08 9.80 -26.73 -0.26 -4.34 16 23 C -0.23 -4.79 10.36 -26.73 -0.28 -5.06 16 24 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 25 H 0.08 1.96 5.14 -51.96 -0.27 1.69 16 26 H 0.12 2.98 4.21 -51.93 -0.22 2.76 16 27 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.61 7.62 -52.49 -0.40 1.21 16 30 H 0.41 3.36 9.11 45.56 0.42 3.77 16 31 H 0.10 2.28 6.31 -51.93 -0.33 1.95 16 32 H 0.10 2.24 6.74 -51.93 -0.35 1.89 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 301.89 15.07 4.55 4.55 Total: -1.00 -29.40 301.89 -8.32 -37.72 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.78 Total: 6.95 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.40 Total: -9.94 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.15 Total: -36.78 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.72 Total: -16.85 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.91 Total: 16.30 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.22 Total: -1.96 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.40 -8.32 -37.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.757 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds