Wall clock time and date at job start Tue Mar 31 2020 06:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46757 * 269.99560 * 3 2 1 5 5 H 1.48498 * 109.47060 * 29.99433 * 3 2 1 6 6 H 1.48495 * 109.47207 * 150.00020 * 3 2 1 7 7 C 1.38813 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99287 * 188.06180 * 7 2 1 9 9 N 1.36935 * 120.00445 * 8.05761 * 7 2 1 10 10 C 1.46506 * 119.99486 * 45.27231 * 9 7 2 11 11 C 1.50697 * 109.47397 * 84.98504 * 10 9 7 12 12 C 1.38088 * 120.08111 * 268.12435 * 11 10 9 13 13 Cl 1.73600 * 119.94196 * 0.02562 * 12 11 10 14 14 C 1.38459 * 120.12090 * 180.02562 * 12 11 10 15 15 C 1.38370 * 120.29171 * 359.97231 * 14 12 11 16 16 C 1.37925 * 120.16312 * 0.02937 * 15 14 12 17 17 C 1.39595 * 120.08282 * 87.84499 * 11 10 9 18 18 C 1.47723 * 120.14392 * 359.97438 * 17 11 10 19 19 O 1.21476 * 119.99957 * 5.16749 * 18 17 11 20 20 O 1.34707 * 120.00043 * 185.16204 * 18 17 11 21 21 C 1.46498 * 120.00187 * 225.26601 * 9 7 2 22 22 C 1.53001 * 117.49915 * 3.19517 * 21 9 7 23 23 C 1.53000 * 117.50056 * 294.57041 * 21 9 7 24 24 H 0.97001 * 120.00100 * 4.99920 * 1 2 3 25 25 H 1.09000 * 109.46417 * 204.98252 * 10 9 7 26 26 H 1.08995 * 109.46902 * 324.98140 * 10 9 7 27 27 H 1.07997 * 119.85683 * 179.97438 * 14 12 11 28 28 H 1.08001 * 119.91678 * 179.97438 * 15 14 12 29 29 H 1.07999 * 120.06584 * 179.97438 * 16 15 14 30 30 H 0.96703 * 117.00332 * 179.97438 * 20 18 17 31 31 H 1.09006 * 115.54837 * 148.89553 * 21 9 7 32 32 H 1.08996 * 117.49848 * 359.97438 * 22 21 9 33 33 H 1.09002 * 117.49996 * 145.02083 * 22 21 9 34 34 H 1.09000 * 117.49283 * 214.98221 * 23 21 9 35 35 H 1.08996 * 117.49997 * 359.97304 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0823 -1.2067 0.1317 9 7 1.3357 -2.3823 -0.1652 10 6 0.3149 -2.5021 -1.2092 11 6 0.9729 -2.8613 -2.5164 12 6 1.3655 -1.8666 -3.3900 13 17 1.1011 -0.2003 -2.9811 14 6 1.9697 -2.1957 -4.5915 15 6 2.1846 -3.5214 -4.9246 16 6 1.7972 -4.5245 -4.0609 17 6 1.1924 -4.2003 -2.8446 18 6 0.7813 -5.2697 -1.9121 19 8 0.1674 -4.9914 -0.9015 20 8 1.0870 -6.5534 -2.1826 21 6 1.6350 -3.5250 0.7014 22 6 2.6570 -3.3145 1.8203 23 6 3.0278 -4.1487 0.5924 24 1 -0.4850 0.8369 -0.0732 25 1 -0.3962 -3.2812 -0.9342 26 1 -0.2095 -1.5525 -1.3152 27 1 2.2747 -1.4143 -5.2718 28 1 2.6560 -3.7713 -5.8636 29 1 1.9653 -5.5587 -4.3227 30 1 0.7972 -7.2180 -1.5426 31 1 0.7983 -4.1940 0.9029 32 1 3.1071 -2.3260 1.9114 33 1 2.4929 -3.8451 2.7582 34 1 3.1075 -5.2279 0.7224 35 1 3.7214 -3.7091 -0.1244 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187691.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:17 Heat of formation + Delta-G solvation = -25.260577 kcal Electronic energy + Delta-G solvation = -22590.310077 eV Core-core repulsion = 19194.645660 eV Total energy + Delta-G solvation = -3395.664417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47221 -39.63801 -38.53377 -37.03523 -36.92151 -35.34137 -33.29606 -32.05633 -31.15710 -27.58888 -25.85199 -24.78850 -22.99480 -22.95671 -21.75822 -21.55388 -19.00815 -18.53948 -17.81822 -17.31933 -16.71137 -16.67569 -16.21675 -16.02538 -15.74943 -15.37888 -14.98414 -14.38185 -14.12714 -13.95868 -13.48806 -13.19500 -12.99844 -12.82696 -12.72037 -12.55698 -12.34982 -12.24209 -12.17892 -12.02505 -11.94445 -11.49028 -11.17017 -10.82624 -10.62897 -10.26845 -9.86427 -9.46474 -8.34517 -7.62591 -5.48907 -0.23278 0.36482 1.32230 1.41445 1.46214 1.58326 1.66789 2.25231 2.48969 2.79170 3.29738 3.48806 3.70483 3.98784 4.07137 4.15303 4.26880 4.36043 4.51381 4.52706 4.63831 4.82339 4.87551 4.96086 5.01140 5.07540 5.34373 5.35904 5.41745 5.50554 5.54447 5.72591 5.80653 5.85754 6.02085 6.58444 7.18349 7.27929 7.90517 8.49272 9.21144 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014976 B = 0.009070 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.222598 B = 3086.277211 C = 4313.246555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.015 3.985 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.255 4.255 8 H 0.037 0.963 9 N -0.544 5.544 10 C 0.150 3.850 11 C -0.030 4.030 12 C -0.061 4.061 13 Cl -0.064 7.064 14 C -0.084 4.084 15 C -0.126 4.126 16 C -0.058 4.058 17 C -0.138 4.138 18 C 0.527 3.473 19 O -0.517 6.517 20 O -0.505 6.505 21 C 0.123 3.877 22 C -0.194 4.194 23 C -0.207 4.207 24 H 0.250 0.750 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.152 0.848 28 H 0.177 0.823 29 H 0.165 0.835 30 H 0.429 0.571 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -10.908 -10.381 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.185 4.185 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.386 4.386 8 H 0.054 0.946 9 N -0.260 5.260 10 C 0.025 3.975 11 C -0.034 4.034 12 C -0.088 4.088 13 Cl -0.035 7.035 14 C -0.103 4.103 15 C -0.144 4.144 16 C -0.077 4.077 17 C -0.140 4.140 18 C 0.372 3.628 19 O -0.408 6.408 20 O -0.318 6.318 21 C 0.015 3.985 22 C -0.232 4.232 23 C -0.247 4.247 24 H 0.059 0.941 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.170 0.830 28 H 0.195 0.805 29 H 0.183 0.817 30 H 0.290 0.710 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.114 -10.223 -10.238 14.799 hybrid contribution 0.239 1.091 0.804 1.376 sum 3.353 -9.131 -9.435 13.551 Atomic orbital electron populations 1.69928 1.06172 1.25649 1.52188 1.25541 0.95206 0.99456 0.98252 0.86075 0.78918 0.82327 0.78331 1.19929 1.22091 1.20107 1.18695 0.89320 0.84391 1.46154 0.94566 1.43109 1.43593 1.08005 1.31244 1.20497 0.91314 1.02685 0.83018 1.21062 0.94654 0.91167 0.96529 1.21011 1.04745 0.86207 0.96864 1.98392 1.95147 1.16290 1.93674 1.21638 0.95667 0.99013 0.93965 1.21404 1.01065 0.90388 1.01500 1.21772 0.93075 1.01833 0.90972 1.18949 1.07868 0.90261 0.96946 1.20804 0.75802 0.82484 0.83689 1.90818 1.39147 1.82929 1.27878 1.84471 1.75480 1.16767 1.55132 1.21375 0.90222 0.92211 0.94652 1.23040 1.06303 1.00652 0.93189 1.23228 1.02962 0.97859 1.00699 0.94057 0.91301 0.89473 0.83002 0.80539 0.81704 0.71000 0.88643 0.90680 0.88342 0.88676 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.02 10.93 21.65 0.24 -50.79 16 2 C 0.02 0.82 3.17 84.86 0.27 1.09 16 3 Si 0.92 44.52 28.86 68.60 1.98 46.50 16 4 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.26 -13.91 7.62 84.03 0.64 -13.27 16 8 H 0.04 2.08 7.25 -2.91 -0.02 2.06 16 9 N -0.54 -27.67 2.72 -682.33 -1.85 -29.52 16 10 C 0.15 7.34 4.64 85.63 0.40 7.73 16 11 C -0.03 -1.24 5.47 -19.57 -0.11 -1.34 16 12 C -0.06 -2.35 6.31 22.29 0.14 -2.21 16 13 Cl -0.06 -2.77 23.58 -2.72 -0.06 -2.84 16 14 C -0.08 -2.41 9.82 22.35 0.22 -2.19 16 15 C -0.13 -2.81 10.03 22.23 0.22 -2.58 16 16 C -0.06 -1.46 9.62 22.54 0.22 -1.25 16 17 C -0.14 -4.68 5.87 -20.10 -0.12 -4.80 16 18 C 0.53 16.96 8.15 70.33 0.57 17.53 16 19 O -0.52 -19.94 10.57 19.92 0.21 -19.73 16 20 O -0.50 -11.09 12.69 -56.17 -0.71 -11.80 16 21 C 0.12 5.62 5.12 44.99 0.23 5.85 16 22 C -0.19 -8.12 9.80 30.60 0.30 -7.82 16 23 C -0.21 -8.18 10.36 30.60 0.32 -7.87 16 24 H 0.25 13.92 8.32 -92.71 -0.77 13.15 16 25 H 0.07 3.46 5.14 -2.92 -0.02 3.45 16 26 H 0.09 4.76 4.21 -2.39 -0.01 4.75 16 27 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 28 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.17 3.03 7.62 -2.91 -0.02 3.01 16 30 H 0.43 5.52 9.11 -74.06 -0.67 4.85 16 31 H 0.10 4.41 6.31 -2.38 -0.02 4.40 16 32 H 0.07 3.49 6.74 -2.39 -0.02 3.48 16 33 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.06 2.66 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -67.01 301.89 3.57 -63.44 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.47 Total: 15.85 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.30 Total: -11.11 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -1.62 Total: -80.31 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.50 Total: -31.53 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.98 Total: 46.50 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -0.06 Total: -2.84 kcal Total: -67.01 3.57 -63.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187691.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.178 kcal (2) G-P(sol) polarization free energy of solvation -67.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds