Wall clock time and date at job start Tue Mar 31 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99584 * 2 1 4 4 H 1.48507 * 109.47109 * 239.99777 * 3 2 1 5 5 H 1.48499 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47363 * 120.00201 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 179.97438 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 C 1.50704 * 110.99986 * 204.87852 * 11 10 9 14 14 C 1.38244 * 119.98622 * 58.27773 * 13 11 10 15 15 C 1.38215 * 120.00939 * 179.72213 * 14 13 11 16 16 C 1.38350 * 119.98639 * 0.54471 * 15 14 13 17 17 Cl 1.73606 * 120.00991 * 179.70549 * 16 15 14 18 18 C 1.38356 * 119.97628 * 359.72712 * 16 15 14 19 19 C 1.38212 * 119.98221 * 0.02562 * 18 16 15 20 20 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 21 21 H 1.09000 * 110.69068 * 277.04987 * 20 11 10 22 22 C 1.50696 * 110.85075 * 153.69831 * 20 11 10 23 23 O 1.20824 * 120.00156 * 5.09142 * 22 20 11 24 24 O 1.34226 * 119.99803 * 185.08597 * 22 20 11 25 25 C 1.47018 * 125.64999 * 0.02562 * 9 7 2 26 26 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 28 28 H 1.09001 * 110.36709 * 85.21947 * 10 9 7 29 29 H 1.07994 * 119.99107 * 359.97438 * 14 13 11 30 30 H 1.07997 * 120.00206 * 180.27329 * 15 14 13 31 31 H 1.07998 * 120.00677 * 180.02562 * 18 16 15 32 32 H 1.07997 * 119.98985 * 179.97438 * 19 18 16 33 33 H 0.96707 * 116.99950 * 180.02562 * 24 22 20 34 34 H 1.09002 * 109.88241 * 298.32312 * 25 9 7 35 35 H 1.09000 * 109.88049 * 59.33441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9336 -3.7311 0.0005 11 6 0.8524 -4.6558 -0.6125 12 1 0.8580 -4.5954 -1.7008 13 6 1.0351 -6.0792 -0.1524 14 6 1.0123 -6.3774 1.1973 15 6 1.1741 -7.6836 1.6195 16 6 1.3701 -8.6909 0.6916 17 17 1.5810 -10.3306 1.2216 18 6 1.3984 -8.3910 -0.6588 19 6 1.2314 -7.0853 -1.0799 20 6 -0.4518 -4.0434 -0.0301 21 1 -0.6375 -4.4186 0.9763 22 6 -1.6261 -4.3260 -0.9314 23 8 -1.4866 -5.0321 -1.9018 24 8 -2.8269 -3.7933 -0.6559 25 6 -0.1374 -2.5328 -0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 2.8336 -3.7402 -0.6143 28 1 2.1676 -4.0416 1.0189 29 1 0.8640 -5.5903 1.9216 30 1 1.1518 -7.9170 2.6736 31 1 1.5510 -9.1770 -1.3835 32 1 1.2539 -6.8510 -2.1340 33 1 -3.5500 -4.0034 -1.2627 34 1 -0.5549 -2.0849 0.9013 35 1 -0.5571 -2.0494 -0.8828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188113.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:58 Heat of formation + Delta-G solvation = -50.639727 kcal Electronic energy + Delta-G solvation = -21368.684630 eV Core-core repulsion = 17971.919690 eV Total energy + Delta-G solvation = -3396.764940 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.32181 -39.23613 -37.29230 -36.33706 -35.69882 -33.11768 -31.07466 -30.91810 -29.77607 -27.32146 -24.98890 -23.32275 -22.78824 -21.71379 -20.32829 -19.40308 -17.69977 -17.18651 -17.04741 -16.27283 -15.55917 -15.24525 -14.92705 -14.53105 -14.02074 -13.70515 -13.52371 -13.42728 -12.89158 -12.56660 -12.39863 -12.26845 -11.81242 -11.59144 -11.38863 -11.22864 -11.05616 -10.90655 -10.82329 -10.79080 -10.45024 -10.29669 -10.09413 -9.96455 -9.75108 -8.99524 -8.70747 -8.45089 -6.97262 -5.81087 -3.15728 1.17802 1.34443 2.10484 2.60396 3.36893 3.41127 3.42580 3.44257 3.66724 4.41693 4.77564 4.85751 4.90266 4.99797 5.34491 5.40434 5.43156 5.50390 5.57091 5.63469 5.79401 5.88055 5.92465 6.04513 6.08942 6.24977 6.33157 6.48539 6.61899 6.79743 6.84374 6.88047 7.32390 7.39310 7.67489 8.11396 8.27282 9.09592 9.70071 10.33208 11.31082 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.004133 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.428911 B = 6773.426715 C = 7627.248876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.915 3.085 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.144 3.856 11 C -0.051 4.051 12 H 0.098 0.902 13 C -0.052 4.052 14 C -0.104 4.104 15 C -0.110 4.110 16 C -0.044 4.044 17 Cl -0.084 7.084 18 C -0.112 4.112 19 C -0.093 4.093 20 C -0.106 4.106 21 H 0.107 0.893 22 C 0.498 3.502 23 O -0.524 6.524 24 O -0.510 6.510 25 C 0.195 3.805 26 H 0.256 0.744 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.402 0.598 34 H 0.059 0.941 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -14.992 1.154 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.361 4.361 8 H 0.099 0.901 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.071 4.071 12 H 0.116 0.884 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.129 4.129 16 C -0.070 4.070 17 Cl -0.055 7.055 18 C -0.130 4.130 19 C -0.112 4.112 20 C -0.126 4.126 21 H 0.124 0.876 22 C 0.341 3.659 23 O -0.413 6.413 24 O -0.320 6.320 25 C 0.069 3.931 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.259 0.741 34 H 0.077 0.923 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.701 -14.968 1.214 15.034 hybrid contribution -0.145 0.520 -0.385 0.664 sum -0.846 -14.448 0.829 14.496 Atomic orbital electron populations 1.69889 1.04899 1.25543 1.56584 1.24825 0.95761 0.97825 1.01799 0.86151 0.78444 0.82893 0.77969 1.21092 1.21542 1.21042 1.19024 0.90519 0.81988 1.44533 0.90063 1.44417 1.01004 1.00126 1.87458 1.21675 0.93996 0.85181 0.97354 1.21428 0.94524 0.89599 1.01540 0.88418 1.19919 0.96863 0.95326 0.93163 1.21081 0.99506 0.95783 0.95823 1.20990 1.00760 0.91861 0.99275 1.20879 1.06512 0.85286 0.94326 1.98348 1.95869 1.20499 1.90785 1.20996 1.01096 0.97280 0.93674 1.21062 0.98612 0.91368 1.00122 1.22599 0.88968 1.03232 0.97797 0.87561 1.23342 0.83460 0.74924 0.84206 1.90646 1.84730 1.36791 1.29157 1.84626 1.20317 1.70384 1.56658 1.21102 0.85203 0.84229 1.02519 0.93412 0.93332 0.95365 0.84702 0.85158 0.85264 0.84994 0.74077 0.92268 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.03 10.31 55.49 0.57 -25.45 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.20 10.28 -15.06 -0.15 -6.35 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.55 3.39 -170.07 -0.58 -15.12 16 10 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 11 C -0.05 -0.88 2.32 -89.48 -0.21 -1.09 16 12 H 0.10 1.78 7.31 -51.93 -0.38 1.40 16 13 C -0.05 -0.76 5.00 -104.62 -0.52 -1.29 16 14 C -0.10 -1.39 8.29 -39.59 -0.33 -1.71 16 15 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 16 C -0.04 -0.54 6.32 -39.50 -0.25 -0.79 16 17 Cl -0.08 -0.93 28.96 -51.86 -1.50 -2.43 16 18 C -0.11 -1.37 9.83 -39.55 -0.39 -1.76 16 19 C -0.09 -1.26 9.68 -39.59 -0.38 -1.65 16 20 C -0.11 -1.90 2.87 -89.80 -0.26 -2.16 16 21 H 0.11 1.71 6.80 -51.93 -0.35 1.36 16 22 C 0.50 8.69 7.50 36.00 0.27 8.96 16 23 O -0.52 -9.85 16.53 -18.75 -0.31 -10.16 16 24 O -0.51 -7.70 13.40 -39.25 -0.53 -8.23 16 25 C 0.19 4.44 4.94 -3.07 -0.02 4.43 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.03 0.53 7.05 -51.93 -0.37 0.16 16 29 H 0.14 1.72 7.03 -52.49 -0.37 1.35 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.13 1.68 7.98 -52.49 -0.42 1.26 16 33 H 0.40 4.04 9.10 45.56 0.41 4.45 16 34 H 0.06 1.48 7.51 -51.93 -0.39 1.09 16 35 H 0.05 1.39 7.04 -51.93 -0.37 1.03 16 LS Contribution 312.70 15.07 4.71 4.71 Total: -1.00 -30.44 312.70 -8.44 -38.88 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.04 Total: 4.04 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.74 Total: -2.61 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.01 Total: -40.58 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.84 Total: -18.39 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.50 Total: -2.43 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.44 -8.44 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188113.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.760 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds