Wall clock time and date at job start Tue Mar 31 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86793 * 119.99584 * 2 1 4 4 H 1.48507 * 109.47109 * 239.99777 * 3 2 1 5 5 H 1.48499 * 109.47578 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47363 * 120.00201 * 3 2 1 7 7 C 1.38812 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99503 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64483 * 179.97438 * 9 7 2 11 11 C 1.54914 * 104.82992 * 204.16378 * 10 9 7 12 12 H 1.09000 * 111.00339 * 81.07133 * 11 10 9 13 13 C 1.50704 * 110.99986 * 204.87852 * 11 10 9 14 14 C 1.38244 * 119.98622 * 58.27773 * 13 11 10 15 15 C 1.38215 * 120.00939 * 179.72213 * 14 13 11 16 16 C 1.38350 * 119.98639 * 0.54471 * 15 14 13 17 17 Cl 1.73606 * 120.00991 * 179.70549 * 16 15 14 18 18 C 1.38356 * 119.97628 * 359.72712 * 16 15 14 19 19 C 1.38212 * 119.98221 * 0.02562 * 18 16 15 20 20 C 1.55405 * 101.66697 * 323.07703 * 11 10 9 21 21 H 1.09000 * 110.69068 * 277.04987 * 20 11 10 22 22 C 1.50696 * 110.85075 * 153.69831 * 20 11 10 23 23 O 1.20824 * 120.00156 * 5.09142 * 22 20 11 24 24 O 1.34226 * 119.99803 * 185.08597 * 22 20 11 25 25 C 1.47018 * 125.64999 * 0.02562 * 9 7 2 26 26 H 0.96997 * 120.00493 * 0.02562 * 1 2 3 27 27 H 1.08999 * 110.36956 * 323.00754 * 10 9 7 28 28 H 1.09001 * 110.36709 * 85.21947 * 10 9 7 29 29 H 1.07994 * 119.99107 * 359.97438 * 14 13 11 30 30 H 1.07997 * 120.00206 * 180.27329 * 15 14 13 31 31 H 1.07998 * 120.00677 * 180.02562 * 18 16 15 32 32 H 1.07997 * 119.98985 * 179.97438 * 19 18 16 33 33 H 0.96707 * 116.99950 * 180.02562 * 24 22 20 34 34 H 1.09002 * 109.88241 * 298.32312 * 25 9 7 35 35 H 1.09000 * 109.88049 * 59.33441 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9336 -3.7311 0.0005 11 6 0.8524 -4.6558 -0.6125 12 1 0.8580 -4.5954 -1.7008 13 6 1.0351 -6.0792 -0.1524 14 6 1.0123 -6.3774 1.1973 15 6 1.1741 -7.6836 1.6195 16 6 1.3701 -8.6909 0.6916 17 17 1.5810 -10.3306 1.2216 18 6 1.3984 -8.3910 -0.6588 19 6 1.2314 -7.0853 -1.0799 20 6 -0.4518 -4.0434 -0.0301 21 1 -0.6375 -4.4186 0.9763 22 6 -1.6261 -4.3260 -0.9314 23 8 -1.4866 -5.0321 -1.9018 24 8 -2.8269 -3.7933 -0.6559 25 6 -0.1374 -2.5328 -0.0005 26 1 -0.4851 0.8400 -0.0004 27 1 2.8336 -3.7402 -0.6143 28 1 2.1676 -4.0416 1.0189 29 1 0.8640 -5.5903 1.9216 30 1 1.1518 -7.9170 2.6736 31 1 1.5510 -9.1770 -1.3835 32 1 1.2539 -6.8510 -2.1340 33 1 -3.5500 -4.0034 -1.2627 34 1 -0.5549 -2.0849 0.9013 35 1 -0.5571 -2.0494 -0.8828 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188113.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:57 Heat of formation + Delta-G solvation = -68.110185 kcal Electronic energy + Delta-G solvation = -21369.442206 eV Core-core repulsion = 17971.919690 eV Total energy + Delta-G solvation = -3397.522516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68106 -40.37190 -38.72092 -37.34969 -37.05472 -34.85213 -32.48987 -32.01868 -31.38758 -28.80263 -26.83319 -24.67978 -23.87278 -23.03915 -21.96240 -20.74829 -19.08032 -18.89844 -18.27555 -17.62440 -17.12195 -16.44277 -16.22373 -16.01724 -15.44008 -15.30589 -14.54955 -14.45114 -14.25454 -14.14977 -13.90803 -13.87509 -13.08092 -13.02472 -12.79256 -12.69626 -12.53579 -12.42531 -12.23577 -11.99152 -11.93669 -11.83499 -11.73877 -11.60306 -11.40037 -10.71041 -9.96698 -9.50656 -8.93017 -7.85499 -5.21630 0.14930 0.36603 1.16831 1.19400 1.49964 1.52225 1.58477 2.14906 2.51000 2.62957 3.34238 3.45016 3.55508 3.81975 3.95540 3.99198 4.06551 4.18239 4.35614 4.40066 4.51932 4.57446 4.63921 4.76918 4.93038 5.04840 5.19889 5.27517 5.30818 5.42325 5.45205 5.59119 5.64052 5.70285 5.84494 6.15840 7.02580 7.07688 7.73384 8.36632 9.25100 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.004133 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.428911 B = 6773.426715 C = 7627.248876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.978 3.022 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.088 0.912 9 N -0.625 5.625 10 C 0.142 3.858 11 C -0.034 4.034 12 H 0.082 0.918 13 C -0.066 4.066 14 C -0.107 4.107 15 C -0.108 4.108 16 C -0.046 4.046 17 Cl -0.071 7.071 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.097 4.097 21 H 0.128 0.872 22 C 0.502 3.498 23 O -0.538 6.538 24 O -0.509 6.509 25 C 0.209 3.791 26 H 0.249 0.751 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.425 0.575 34 H 0.029 0.971 35 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 -16.743 1.655 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.254 4.254 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.105 0.895 9 N -0.351 5.351 10 C 0.017 3.983 11 C -0.053 4.053 12 H 0.101 0.899 13 C -0.067 4.067 14 C -0.125 4.125 15 C -0.126 4.126 16 C -0.073 4.073 17 Cl -0.042 7.042 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.117 4.117 21 H 0.145 0.855 22 C 0.345 3.655 23 O -0.428 6.428 24 O -0.322 6.322 25 C 0.083 3.917 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.157 0.843 30 H 0.169 0.831 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.286 0.714 34 H 0.047 0.953 35 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.132 -16.756 1.712 16.844 hybrid contribution -0.329 0.962 -0.529 1.146 sum -0.461 -15.794 1.183 15.845 Atomic orbital electron populations 1.70107 1.06200 1.25583 1.57962 1.25620 0.96581 1.00941 1.02298 0.85161 0.77147 0.78835 0.78230 1.20500 1.22190 1.20115 1.19429 0.91160 0.83243 1.43453 0.89458 1.44685 1.01773 1.01318 1.87355 1.21834 0.94607 0.83514 0.98328 1.21152 0.92894 0.90919 1.00352 0.89918 1.19710 0.99049 0.93855 0.94093 1.21141 0.99494 0.96594 0.95252 1.21197 0.99813 0.91221 1.00400 1.21045 1.05737 0.86017 0.94476 1.98358 1.95737 1.19462 1.90652 1.21192 1.00241 0.97174 0.94243 1.21143 0.98654 0.91749 1.00207 1.22452 0.90052 0.99685 0.99480 0.85460 1.23114 0.83959 0.74746 0.83695 1.90640 1.85145 1.37573 1.29459 1.84570 1.20401 1.69810 1.57392 1.20678 0.84575 0.87226 0.99207 0.94201 0.93190 0.93803 0.84271 0.83122 0.83301 0.84693 0.71397 0.95282 0.96650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.34 10.31 21.65 0.22 -55.12 16 2 C -0.06 -3.36 5.49 84.86 0.47 -2.90 16 3 Si 0.98 44.49 29.55 68.60 2.03 46.52 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.17 10.28 84.03 0.86 -12.31 16 8 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.62 -30.62 3.39 -691.98 -2.35 -32.97 16 10 C 0.14 5.43 6.65 86.86 0.58 6.01 16 11 C -0.03 -1.14 2.32 -10.06 -0.02 -1.16 16 12 H 0.08 3.03 7.31 -2.39 -0.02 3.01 16 13 C -0.07 -1.84 5.00 -19.86 -0.10 -1.94 16 14 C -0.11 -2.62 8.29 22.27 0.18 -2.43 16 15 C -0.11 -2.32 9.83 22.29 0.22 -2.11 16 16 C -0.05 -1.01 6.32 22.32 0.14 -0.87 16 17 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.45 16 18 C -0.11 -2.41 9.83 22.29 0.22 -2.19 16 19 C -0.10 -2.51 9.68 22.26 0.22 -2.29 16 20 C -0.10 -3.46 2.87 -10.26 -0.03 -3.49 16 21 H 0.13 3.97 6.80 -2.39 -0.02 3.95 16 22 C 0.50 17.27 7.50 71.23 0.53 17.80 16 23 O -0.54 -19.81 16.53 21.97 0.36 -19.45 16 24 O -0.51 -14.98 13.40 -51.38 -0.69 -15.67 16 25 C 0.21 9.82 4.94 86.73 0.43 10.25 16 26 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.57 7.05 -2.39 -0.02 1.55 16 29 H 0.14 3.25 7.03 -2.91 -0.02 3.23 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.14 3.26 7.98 -2.91 -0.02 3.24 16 33 H 0.42 7.95 9.10 -74.05 -0.67 7.28 16 34 H 0.03 1.52 7.51 -2.39 -0.02 1.50 16 35 H 0.02 0.83 7.04 -2.39 -0.02 0.81 16 Total: -1.00 -65.79 312.70 3.65 -62.14 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.46 Total: 13.64 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 3.70 Total: 2.37 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.13 Total: -88.09 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.33 Total: -35.12 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.45 kcal Total: -65.79 3.65 -62.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188113.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.974 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds