Wall clock time and date at job start Tue Mar 31 2020 07:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 120.00150 * 2 1 4 4 H 1.48499 * 109.46983 * 273.66776 * 3 2 1 5 5 H 1.48495 * 109.46758 * 33.66571 * 3 2 1 6 6 H 1.48502 * 109.47016 * 153.66793 * 3 2 1 7 7 C 1.38819 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99946 * 346.48300 * 7 2 1 9 9 N 1.36937 * 119.99906 * 166.48467 * 7 2 1 10 10 C 1.46501 * 119.99840 * 124.11534 * 9 7 2 11 11 C 1.50698 * 109.46960 * 89.99971 * 10 9 7 12 12 C 1.38320 * 119.93432 * 260.27596 * 11 10 9 13 13 C 1.38388 * 120.33252 * 180.28038 * 12 11 10 14 14 C 1.37931 * 120.18363 * 359.72329 * 13 12 11 15 15 C 1.39638 * 119.86079 * 359.97438 * 14 13 12 16 16 C 1.47649 * 120.16012 * 179.97438 * 15 14 13 17 17 O 1.21474 * 119.99962 * 180.02562 * 16 15 14 18 18 O 1.34717 * 119.99678 * 0.02562 * 16 15 14 19 19 C 1.38102 * 119.93223 * 80.00093 * 11 10 9 20 20 Cl 1.73592 * 120.09701 * 359.97438 * 19 11 10 21 21 C 1.46505 * 119.99885 * 304.11386 * 9 7 2 22 22 C 1.52997 * 117.49928 * 3.25830 * 21 9 7 23 23 C 1.52997 * 117.49905 * 294.63456 * 21 9 7 24 24 H 0.96996 * 119.99508 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47272 * 329.99879 * 10 9 7 26 26 H 1.09005 * 109.46926 * 209.99471 * 10 9 7 27 27 H 1.08005 * 119.83326 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.90895 * 179.69518 * 13 12 11 29 29 H 1.07994 * 120.06694 * 180.02562 * 14 13 12 30 30 H 0.96700 * 116.99934 * 179.97438 * 18 16 15 31 31 H 1.08996 * 115.54553 * 148.97028 * 21 9 7 32 32 H 1.08998 * 117.49958 * 359.97438 * 22 21 9 33 33 H 1.08996 * 117.49743 * 145.02303 * 22 21 9 34 34 H 1.08999 * 117.50049 * 214.98271 * 23 21 9 35 35 H 1.09004 * 117.50049 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4202 2.0912 -1.3972 5 1 1.4886 2.6290 0.7761 6 1 3.5845 1.4190 0.6210 7 6 2.0103 -1.2022 -0.0005 8 1 1.4927 -2.1247 0.2177 9 7 3.3512 -1.2185 -0.2777 10 6 4.2896 -1.8116 0.6783 11 6 4.4642 -3.2759 0.3681 12 6 3.7745 -4.2240 1.1021 13 6 3.9330 -5.5712 0.8281 14 6 4.7769 -5.9783 -0.1841 15 6 5.4723 -5.0277 -0.9342 16 6 6.3778 -5.4563 -2.0188 17 8 6.9816 -4.6268 -2.6692 18 8 6.5342 -6.7671 -2.2871 19 6 5.3082 -3.6684 -0.6521 20 17 6.1674 -2.4774 -1.5778 21 6 3.8474 -0.6428 -1.5302 22 6 2.8275 0.0293 -2.4516 23 6 3.4298 -1.3239 -2.8350 24 1 -0.4849 0.8401 0.0004 25 1 3.8984 -1.6985 1.6893 26 1 5.2528 -1.3069 0.6027 27 1 3.1126 -3.9114 1.8963 28 1 3.3949 -6.3058 1.4087 29 1 4.8989 -7.0301 -0.3965 30 1 7.1373 -6.9991 -3.0066 31 1 4.8471 -0.2109 -1.4855 32 1 1.7873 0.0427 -2.1262 33 1 3.1561 0.9036 -3.0133 34 1 4.1547 -1.3398 -3.6489 35 1 2.7856 -2.2002 -2.7616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622692.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:43 Heat of formation + Delta-G solvation = -6.442800 kcal Electronic energy + Delta-G solvation = -21926.207581 eV Core-core repulsion = 18531.359164 eV Total energy + Delta-G solvation = -3394.848417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31806 -38.82168 -37.13978 -36.18991 -35.81645 -33.53272 -32.18699 -30.97618 -30.14673 -25.96197 -24.66034 -23.54352 -21.52864 -21.49398 -21.05282 -19.74282 -17.86817 -17.30383 -16.73682 -16.05232 -15.61756 -15.35034 -15.22591 -14.60027 -14.37884 -13.79142 -13.50332 -13.33801 -12.93150 -12.77117 -11.99336 -11.88946 -11.64087 -11.57681 -11.49180 -11.32952 -11.12717 -10.79051 -10.71345 -10.42786 -10.33474 -9.83419 -9.77296 -9.27706 -9.08867 -8.84674 -8.58159 -8.30416 -6.51678 -6.04903 -3.77286 0.76239 1.39671 2.47977 2.65565 3.01723 3.38600 3.47436 3.55170 3.81339 4.50282 4.81775 4.93861 4.96678 5.06208 5.08899 5.31101 5.41972 5.46088 5.70299 5.92745 5.98333 6.04675 6.14367 6.17851 6.23757 6.40957 6.46601 6.54570 6.60838 6.64090 6.74930 6.88569 7.07175 7.33680 7.92341 8.05958 8.45705 8.94415 9.58720 10.08085 11.03905 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.006079 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.917016 B = 4605.183026 C = 5239.646799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.886 3.114 4 H -0.270 1.270 5 H -0.305 1.305 6 H -0.268 1.268 7 C -0.285 4.285 8 H 0.070 0.930 9 N -0.563 5.563 10 C 0.178 3.822 11 C -0.085 4.085 12 C -0.054 4.054 13 C -0.136 4.136 14 C -0.065 4.065 15 C -0.135 4.135 16 C 0.522 3.478 17 O -0.495 6.495 18 O -0.517 6.517 19 C 0.035 3.965 20 Cl -0.030 7.030 21 C 0.116 3.884 22 C -0.203 4.203 23 C -0.203 4.203 24 H 0.265 0.735 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.138 0.862 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.410 0.590 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.314 -10.625 -0.093 15.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.233 1.233 6 H -0.193 1.193 7 C -0.414 4.414 8 H 0.088 0.912 9 N -0.282 5.282 10 C 0.052 3.948 11 C -0.089 4.089 12 C -0.073 4.073 13 C -0.155 4.155 14 C -0.084 4.084 15 C -0.137 4.137 16 C 0.365 3.635 17 O -0.383 6.383 18 O -0.329 6.329 19 C 0.006 3.994 20 Cl -0.001 7.001 21 C 0.009 3.991 22 C -0.241 4.241 23 C -0.243 4.243 24 H 0.075 0.925 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.155 0.845 30 H 0.269 0.731 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.115 -10.033 -0.006 14.973 hybrid contribution 0.653 0.714 -0.820 1.268 sum 11.768 -9.319 -0.826 15.034 Atomic orbital electron populations 1.69849 1.06282 1.27177 1.50205 1.25845 0.94968 0.98657 0.94915 0.86774 0.80279 0.83313 0.78200 1.19611 1.23300 1.19301 1.18512 0.82058 0.93204 1.47617 0.91219 1.43492 1.03633 1.67018 1.14028 1.20032 0.94354 0.85763 0.94637 1.20992 0.93808 1.00453 0.93652 1.21406 0.95783 0.91977 0.98173 1.21193 0.99429 0.96345 0.98494 1.21260 0.94301 0.99005 0.93820 1.18740 1.03073 0.92527 0.99363 1.20810 0.80061 0.79951 0.82644 1.90971 1.45424 1.52801 1.49057 1.84549 1.65114 1.27242 1.55971 1.20882 0.95892 0.88410 0.94169 1.98389 1.74559 1.55612 1.71496 1.21303 0.94688 0.99553 0.83571 1.23569 1.01835 0.94680 1.04049 1.23253 1.03941 0.96468 1.00656 0.92483 0.90703 0.92657 0.84385 0.85069 0.84465 0.73135 0.89572 0.86355 0.90808 0.91161 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 13.97 55.49 0.78 -25.28 16 2 C 0.06 1.61 3.82 -17.43 -0.07 1.55 16 3 Si 0.89 21.71 24.66 -169.99 -4.19 17.52 16 4 H -0.27 -6.43 5.82 56.52 0.33 -6.10 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.29 -7.49 9.18 -15.06 -0.14 -7.63 16 8 H 0.07 2.01 8.06 -52.49 -0.42 1.59 16 9 N -0.56 -12.79 2.04 -167.02 -0.34 -13.13 16 10 C 0.18 3.41 5.40 -5.19 -0.03 3.38 16 11 C -0.09 -1.47 5.46 -104.64 -0.57 -2.04 16 12 C -0.05 -0.81 9.66 -39.50 -0.38 -1.20 16 13 C -0.14 -1.72 10.03 -39.64 -0.40 -2.12 16 14 C -0.07 -0.84 9.62 -39.17 -0.38 -1.21 16 15 C -0.13 -2.06 5.88 -104.95 -0.62 -2.68 16 16 C 0.52 7.53 8.26 34.57 0.29 7.82 16 17 O -0.49 -8.33 14.76 -19.25 -0.28 -8.61 16 18 O -0.52 -5.39 12.68 -40.54 -0.51 -5.90 16 19 C 0.03 0.59 6.35 -39.05 -0.25 0.35 16 20 Cl -0.03 -0.54 21.05 -51.86 -1.09 -1.63 16 21 C 0.12 2.52 3.22 -67.93 -0.22 2.30 16 22 C -0.20 -4.57 6.62 -26.73 -0.18 -4.75 16 23 C -0.20 -4.27 9.62 -26.73 -0.26 -4.52 16 24 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.07 1.38 7.90 -51.93 -0.41 0.97 16 26 H 0.06 1.00 7.28 -51.93 -0.38 0.62 16 27 H 0.14 1.93 8.03 -52.48 -0.42 1.51 16 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.14 1.42 7.61 -52.49 -0.40 1.02 16 30 H 0.41 2.36 9.11 45.56 0.42 2.77 16 31 H 0.09 1.78 7.38 -51.93 -0.38 1.39 16 32 H 0.12 3.03 5.05 -51.93 -0.26 2.77 16 33 H 0.07 1.53 7.84 -51.93 -0.41 1.12 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 303.21 15.07 4.57 4.57 Total: -1.00 -31.14 303.21 -7.42 -38.55 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -3.15 Total: 4.67 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -3.19 Total: -10.76 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.43 Total: -38.41 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.80 Total: -14.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.19 Total: 17.52 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.09 Total: -1.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.14 -7.42 -38.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622692.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.108 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds