Wall clock time and date at job start Tue Mar 31 2020 07:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 120.00150 * 2 1 4 4 H 1.48499 * 109.46983 * 273.66776 * 3 2 1 5 5 H 1.48495 * 109.46758 * 33.66571 * 3 2 1 6 6 H 1.48502 * 109.47016 * 153.66793 * 3 2 1 7 7 C 1.38819 * 120.00026 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99946 * 346.48300 * 7 2 1 9 9 N 1.36937 * 119.99906 * 166.48467 * 7 2 1 10 10 C 1.46501 * 119.99840 * 124.11534 * 9 7 2 11 11 C 1.50698 * 109.46960 * 89.99971 * 10 9 7 12 12 C 1.38320 * 119.93432 * 260.27596 * 11 10 9 13 13 C 1.38388 * 120.33252 * 180.28038 * 12 11 10 14 14 C 1.37931 * 120.18363 * 359.72329 * 13 12 11 15 15 C 1.39638 * 119.86079 * 359.97438 * 14 13 12 16 16 C 1.47649 * 120.16012 * 179.97438 * 15 14 13 17 17 O 1.21474 * 119.99962 * 180.02562 * 16 15 14 18 18 O 1.34717 * 119.99678 * 0.02562 * 16 15 14 19 19 C 1.38102 * 119.93223 * 80.00093 * 11 10 9 20 20 Cl 1.73592 * 120.09701 * 359.97438 * 19 11 10 21 21 C 1.46505 * 119.99885 * 304.11386 * 9 7 2 22 22 C 1.52997 * 117.49928 * 3.25830 * 21 9 7 23 23 C 1.52997 * 117.49905 * 294.63456 * 21 9 7 24 24 H 0.96996 * 119.99508 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47272 * 329.99879 * 10 9 7 26 26 H 1.09005 * 109.46926 * 209.99471 * 10 9 7 27 27 H 1.08005 * 119.83326 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.90895 * 179.69518 * 13 12 11 29 29 H 1.07994 * 120.06694 * 180.02562 * 14 13 12 30 30 H 0.96700 * 116.99934 * 179.97438 * 18 16 15 31 31 H 1.08996 * 115.54553 * 148.97028 * 21 9 7 32 32 H 1.08998 * 117.49958 * 359.97438 * 22 21 9 33 33 H 1.08996 * 117.49743 * 145.02303 * 22 21 9 34 34 H 1.08999 * 117.50049 * 214.98271 * 23 21 9 35 35 H 1.09004 * 117.50049 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4202 2.0912 -1.3972 5 1 1.4886 2.6290 0.7761 6 1 3.5845 1.4190 0.6210 7 6 2.0103 -1.2022 -0.0005 8 1 1.4927 -2.1247 0.2177 9 7 3.3512 -1.2185 -0.2777 10 6 4.2896 -1.8116 0.6783 11 6 4.4642 -3.2759 0.3681 12 6 3.7745 -4.2240 1.1021 13 6 3.9330 -5.5712 0.8281 14 6 4.7769 -5.9783 -0.1841 15 6 5.4723 -5.0277 -0.9342 16 6 6.3778 -5.4563 -2.0188 17 8 6.9816 -4.6268 -2.6692 18 8 6.5342 -6.7671 -2.2871 19 6 5.3082 -3.6684 -0.6521 20 17 6.1674 -2.4774 -1.5778 21 6 3.8474 -0.6428 -1.5302 22 6 2.8275 0.0293 -2.4516 23 6 3.4298 -1.3239 -2.8350 24 1 -0.4849 0.8401 0.0004 25 1 3.8984 -1.6985 1.6893 26 1 5.2528 -1.3069 0.6027 27 1 3.1126 -3.9114 1.8963 28 1 3.3949 -6.3058 1.4087 29 1 4.8989 -7.0301 -0.3965 30 1 7.1373 -6.9991 -3.0066 31 1 4.8471 -0.2109 -1.4855 32 1 1.7873 0.0427 -2.1262 33 1 3.1561 0.9036 -3.0133 34 1 4.1547 -1.3398 -3.6489 35 1 2.7856 -2.2002 -2.7616 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622692.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:42 Heat of formation + Delta-G solvation = -25.658237 kcal Electronic energy + Delta-G solvation = -21927.040825 eV Core-core repulsion = 18531.359164 eV Total energy + Delta-G solvation = -3395.681661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.40158 -40.03622 -38.81267 -37.35704 -36.91317 -35.11938 -34.11620 -32.20361 -31.60350 -27.62317 -25.79593 -25.24963 -23.28301 -22.72572 -22.26591 -21.48024 -18.99362 -18.70625 -18.34404 -17.17327 -16.93610 -16.76738 -16.61947 -16.37135 -15.60711 -15.32735 -15.13411 -14.63327 -14.37388 -14.15900 -13.73971 -13.51389 -13.13240 -12.84521 -12.71579 -12.53171 -12.50088 -12.40954 -12.26658 -12.12461 -11.96815 -11.78040 -11.33641 -10.91582 -10.74754 -10.52934 -9.99237 -9.63391 -8.40438 -8.11685 -5.86121 -0.37506 0.24269 1.23365 1.43597 1.47203 1.55144 1.59312 2.04686 2.47893 2.64965 3.03303 3.26015 3.41102 3.72507 3.95399 4.06317 4.19451 4.24535 4.30143 4.36007 4.47122 4.63339 4.70399 4.87638 4.89400 4.95155 4.98565 5.12198 5.28417 5.34064 5.50516 5.51137 5.59408 5.77929 6.00402 6.32126 7.00805 7.07496 7.56304 8.10335 8.96815 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.006079 C = 0.005343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.917016 B = 4605.183026 C = 5239.646799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.018 3.982 3 Si 0.936 3.064 4 H -0.258 1.258 5 H -0.314 1.314 6 H -0.260 1.260 7 C -0.267 4.267 8 H 0.034 0.966 9 N -0.573 5.573 10 C 0.177 3.823 11 C -0.106 4.106 12 C -0.064 4.064 13 C -0.125 4.125 14 C -0.051 4.051 15 C -0.150 4.150 16 C 0.526 3.474 17 O -0.525 6.525 18 O -0.501 6.501 19 C 0.017 3.983 20 Cl -0.045 7.045 21 C 0.116 3.884 22 C -0.215 4.215 23 C -0.185 4.185 24 H 0.264 0.736 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.141 0.859 28 H 0.169 0.831 29 H 0.170 0.830 30 H 0.433 0.567 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.984 -12.205 -0.251 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.183 1.183 5 H -0.243 1.243 6 H -0.184 1.184 7 C -0.397 4.397 8 H 0.051 0.949 9 N -0.292 5.292 10 C 0.053 3.947 11 C -0.110 4.110 12 C -0.083 4.083 13 C -0.143 4.143 14 C -0.069 4.069 15 C -0.152 4.152 16 C 0.371 3.629 17 O -0.415 6.415 18 O -0.316 6.316 19 C -0.011 4.011 20 Cl -0.015 7.015 21 C 0.009 3.991 22 C -0.253 4.253 23 C -0.225 4.225 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.159 0.841 28 H 0.186 0.814 29 H 0.188 0.812 30 H 0.295 0.705 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.829 -11.658 -0.172 17.336 hybrid contribution 0.150 0.968 -0.768 1.245 sum 12.979 -10.691 -0.940 16.841 Atomic orbital electron populations 1.69956 1.07831 1.27679 1.52838 1.26342 0.95279 1.01344 0.95106 0.85969 0.79233 0.79879 0.78632 1.18305 1.24270 1.18432 1.18254 0.83659 0.91705 1.46063 0.94867 1.43556 1.02871 1.67632 1.15186 1.20073 0.93749 0.87183 0.93733 1.20749 0.95586 0.99485 0.95142 1.21601 0.95520 0.93033 0.98150 1.21582 0.98695 0.95842 0.98162 1.21669 0.92624 1.00098 0.92507 1.18998 1.03743 0.92238 1.00187 1.20676 0.79398 0.80779 0.82038 1.90962 1.46589 1.53921 1.50062 1.84480 1.65484 1.24743 1.56847 1.21000 0.96507 0.89152 0.94458 1.98369 1.74886 1.56354 1.71903 1.21425 0.94975 0.99396 0.83269 1.23508 1.00261 0.96256 1.05231 1.23120 1.03453 0.94797 1.01142 0.92682 0.90774 0.91690 0.84089 0.81372 0.81228 0.70533 0.87844 0.89624 0.88744 0.88878 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.97 21.65 0.30 -56.10 16 2 C 0.02 1.01 3.82 84.86 0.32 1.34 16 3 Si 0.94 44.90 24.66 68.60 1.69 46.59 16 4 H -0.26 -11.76 5.82 99.48 0.58 -11.18 16 5 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 6 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.27 -14.34 9.18 84.04 0.77 -13.57 16 8 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 9 N -0.57 -25.94 2.04 -682.33 -1.39 -27.33 16 10 C 0.18 6.72 5.40 85.63 0.46 7.19 16 11 C -0.11 -3.59 5.46 -19.88 -0.11 -3.70 16 12 C -0.06 -1.83 9.66 22.33 0.22 -1.61 16 13 C -0.13 -2.75 10.03 22.23 0.22 -2.52 16 14 C -0.05 -1.12 9.62 22.54 0.22 -0.90 16 15 C -0.15 -4.25 5.88 -20.08 -0.12 -4.36 16 16 C 0.53 13.99 8.26 70.31 0.58 14.57 16 17 O -0.52 -16.92 14.76 19.92 0.29 -16.62 16 18 O -0.50 -8.70 12.68 -56.27 -0.71 -9.41 16 19 C 0.02 0.56 6.35 22.61 0.14 0.70 16 20 Cl -0.04 -1.54 21.05 -2.72 -0.06 -1.60 16 21 C 0.12 4.93 3.22 44.99 0.15 5.08 16 22 C -0.21 -9.46 6.62 30.59 0.20 -9.26 16 23 C -0.18 -7.62 9.62 30.59 0.29 -7.33 16 24 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 25 H 0.07 2.75 7.90 -2.39 -0.02 2.73 16 26 H 0.06 2.30 7.28 -2.38 -0.02 2.29 16 27 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 28 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.17 2.65 7.61 -2.91 -0.02 2.63 16 30 H 0.43 3.46 9.11 -74.06 -0.67 2.79 16 31 H 0.10 4.07 7.38 -2.39 -0.02 4.05 16 32 H 0.09 4.43 5.05 -2.39 -0.01 4.42 16 33 H 0.09 3.73 7.84 -2.39 -0.02 3.71 16 34 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -68.43 303.21 3.81 -64.62 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.33 Total: 14.25 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 3.35 Total: -14.39 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -1.09 Total: -83.43 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.42 Total: -26.03 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.69 Total: 46.59 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.06 Total: -1.60 kcal Total: -68.43 3.81 -64.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622692.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.958 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds