Wall clock time and date at job start Tue Mar 31 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47021 * 239.99924 * 3 2 1 5 5 H 1.48500 * 109.46924 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46812 * 119.99745 * 3 2 1 7 7 C 1.38808 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99622 * 186.16510 * 7 2 1 9 9 N 1.36933 * 120.00132 * 6.17690 * 7 2 1 10 10 C 1.46500 * 120.00339 * 43.08706 * 9 7 2 11 11 C 1.50697 * 109.47261 * 95.83140 * 10 9 7 12 12 C 1.37893 * 119.93264 * 98.87044 * 11 10 9 13 13 C 1.39648 * 119.86466 * 180.02562 * 12 11 10 14 14 C 1.47657 * 120.14130 * 179.71932 * 13 12 11 15 15 O 1.21485 * 119.99843 * 0.02562 * 14 13 12 16 16 O 1.34722 * 120.00154 * 179.97438 * 14 13 12 17 17 C 1.39691 * 119.72763 * 359.97438 * 13 12 11 18 18 C 1.37863 * 119.85614 * 359.95278 * 17 13 12 19 19 C 1.38505 * 119.92861 * 278.84462 * 11 10 9 20 20 Cl 1.73597 * 119.86542 * 0.02562 * 19 11 10 21 21 C 1.46499 * 119.99780 * 223.08484 * 9 7 2 22 22 C 1.53002 * 117.49963 * 3.47299 * 21 9 7 23 23 C 1.52997 * 117.50146 * 294.84789 * 21 9 7 24 24 H 0.97004 * 119.99581 * 5.00044 * 1 2 3 25 25 H 1.09002 * 109.46991 * 335.83129 * 10 9 7 26 26 H 1.08995 * 109.46957 * 215.83160 * 10 9 7 27 27 H 1.07998 * 120.07258 * 0.02562 * 12 11 10 28 28 H 0.96706 * 116.99862 * 180.02562 * 16 14 13 29 29 H 1.08001 * 120.07346 * 179.97438 * 17 13 12 30 30 H 1.08011 * 119.92752 * 180.02562 * 18 17 13 31 31 H 1.09000 * 115.55091 * 149.17877 * 21 9 7 32 32 H 1.09000 * 117.49631 * 359.97438 * 22 21 9 33 33 H 1.08999 * 117.50115 * 145.02156 * 22 21 9 34 34 H 1.09003 * 117.50206 * 214.97697 * 23 21 9 35 35 H 1.09002 * 117.49801 * 0.02562 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0855 -1.2048 0.1010 9 7 1.3315 -2.3846 -0.1265 10 6 0.2490 -2.5064 -1.1062 11 6 0.7868 -3.1142 -2.3760 12 6 0.6145 -4.4602 -2.6212 13 6 1.1138 -5.0221 -3.7981 14 6 0.9383 -6.4639 -4.0640 15 8 0.3580 -7.1639 -3.2582 16 8 1.4207 -7.0030 -5.2005 17 6 1.7849 -4.2156 -4.7204 18 6 1.9493 -2.8710 -4.4644 19 6 1.4525 -2.3196 -3.2946 20 17 1.6653 -0.6260 -2.9787 21 6 1.6878 -3.5280 0.7172 22 6 2.7711 -3.3141 1.7763 23 6 3.0763 -4.1416 0.5261 24 1 -0.4850 0.8369 -0.0732 25 1 -0.1596 -1.5189 -1.3208 26 1 -0.5366 -3.1447 -0.7021 27 1 0.0945 -5.0786 -1.9046 28 1 1.2811 -7.9510 -5.3305 29 1 2.1737 -4.6444 -5.6322 30 1 2.4676 -2.2462 -5.1770 31 1 0.8687 -4.2035 0.9640 32 1 3.2189 -2.3227 1.8450 33 1 2.6648 -3.8488 2.7202 34 1 3.1708 -5.2207 0.6475 35 1 3.7248 -3.6942 -0.2272 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:48 Heat of formation + Delta-G solvation = -23.214401 kcal Electronic energy + Delta-G solvation = -21704.518912 eV Core-core repulsion = 18308.943223 eV Total energy + Delta-G solvation = -3395.575689 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.26639 -38.65520 -36.89382 -36.05056 -35.60590 -33.75029 -31.82331 -30.72537 -29.66646 -25.74683 -24.43848 -23.72755 -21.52728 -21.36889 -20.73323 -19.77739 -17.89241 -17.23097 -16.22445 -15.96437 -15.62682 -15.54466 -14.86469 -14.42662 -14.21920 -13.74496 -13.43623 -13.30464 -12.82955 -12.48190 -11.93019 -11.82906 -11.59164 -11.32514 -11.13619 -10.97463 -10.76720 -10.68124 -10.59691 -10.52991 -10.37251 -10.09658 -9.72992 -9.57525 -9.31517 -8.60112 -8.44374 -8.19801 -6.54941 -5.81356 -3.52431 0.87295 1.64263 2.67393 2.83234 3.09009 3.30865 3.35239 3.39618 3.98794 4.38940 4.92989 4.99225 5.14715 5.26110 5.30521 5.37328 5.55538 5.73809 5.88987 5.92515 6.06974 6.20585 6.26383 6.33899 6.44259 6.46883 6.49099 6.60609 6.62929 6.93717 7.03633 7.07108 7.12866 7.57531 7.76178 7.93370 8.48371 9.11300 9.69149 10.27583 11.14590 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.006208 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.372918 B = 4508.993866 C = 5428.283475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.058 0.942 9 N -0.538 5.538 10 C 0.171 3.829 11 C -0.083 4.083 12 C -0.041 4.041 13 C -0.141 4.141 14 C 0.530 3.470 15 O -0.518 6.518 16 O -0.515 6.515 17 C -0.071 4.071 18 C -0.138 4.138 19 C 0.016 3.984 20 Cl -0.031 7.031 21 C 0.126 3.874 22 C -0.187 4.187 23 C -0.227 4.227 24 H 0.257 0.743 25 H 0.128 0.872 26 H 0.038 0.962 27 H 0.136 0.864 28 H 0.409 0.591 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.098 -7.705 -8.898 11.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.167 4.167 3 Si 0.710 3.290 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.076 0.924 9 N -0.253 5.253 10 C 0.045 3.955 11 C -0.087 4.087 12 C -0.061 4.061 13 C -0.142 4.142 14 C 0.375 3.625 15 O -0.408 6.408 16 O -0.327 6.327 17 C -0.090 4.090 18 C -0.157 4.157 19 C -0.012 4.012 20 Cl -0.001 7.001 21 C 0.017 3.983 22 C -0.225 4.225 23 C -0.268 4.268 24 H 0.068 0.932 25 H 0.145 0.855 26 H 0.057 0.943 27 H 0.154 0.846 28 H 0.267 0.733 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.103 0.897 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.855 -7.101 -8.475 11.211 hybrid contribution 0.656 0.242 -0.180 0.722 sum 2.510 -6.859 -8.655 11.325 Atomic orbital electron populations 1.69742 1.05338 1.26102 1.51551 1.25189 0.95013 0.97910 0.98579 0.86684 0.79569 0.83995 0.78796 1.20390 1.21326 1.20376 1.18780 0.90026 0.82899 1.45880 0.92431 1.43177 1.39203 1.07937 1.35020 1.20296 0.89496 1.02658 0.83045 1.21264 0.97108 0.92335 0.97990 1.21122 0.96232 0.94222 0.94480 1.18992 1.07457 0.89246 0.98521 1.21013 0.74431 0.88911 0.78099 1.90875 1.40245 1.62830 1.46818 1.84581 1.75109 1.31383 1.41616 1.21135 0.96634 0.92785 0.98433 1.20998 1.02414 0.95224 0.97051 1.21292 0.97593 0.87920 0.94372 1.98435 1.94981 1.11589 1.95112 1.21153 0.89120 0.92577 0.95433 1.23008 1.05978 1.01391 0.92106 1.23384 1.05277 0.97140 1.00972 0.93212 0.85468 0.94326 0.84647 0.73258 0.84716 0.85065 0.89688 0.88232 0.90664 0.90979 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 11.06 55.49 0.61 -22.72 16 2 C 0.03 0.86 3.68 -17.43 -0.06 0.79 16 3 Si 0.88 20.55 29.24 -169.99 -4.97 15.58 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.14 6.72 -15.06 -0.10 -6.24 16 8 H 0.06 1.49 7.15 -52.49 -0.38 1.12 16 9 N -0.54 -12.47 2.74 -167.03 -0.46 -12.92 16 10 C 0.17 3.75 4.90 -5.20 -0.03 3.72 16 11 C -0.08 -1.60 5.45 -104.65 -0.57 -2.17 16 12 C -0.04 -0.72 9.21 -39.18 -0.36 -1.08 16 13 C -0.14 -2.20 5.87 -104.98 -0.62 -2.82 16 14 C 0.53 7.68 8.27 34.58 0.29 7.96 16 15 O -0.52 -8.82 17.13 -19.25 -0.33 -9.15 16 16 O -0.52 -5.44 12.68 -40.55 -0.51 -5.95 16 17 C -0.07 -1.00 9.62 -39.18 -0.38 -1.38 16 18 C -0.14 -2.12 9.81 -39.61 -0.39 -2.51 16 19 C 0.02 0.30 6.32 -39.37 -0.25 0.05 16 20 Cl -0.03 -0.62 23.97 -51.86 -1.24 -1.87 16 21 C 0.13 2.63 6.58 -67.93 -0.45 2.18 16 22 C -0.19 -3.65 9.79 -26.73 -0.26 -3.91 16 23 C -0.23 -4.34 10.35 -26.73 -0.28 -4.61 16 24 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 25 H 0.13 3.09 4.60 -51.93 -0.24 2.86 16 26 H 0.04 0.82 7.98 -51.93 -0.41 0.40 16 27 H 0.14 2.35 7.63 -52.49 -0.40 1.95 16 28 H 0.41 2.35 9.11 45.56 0.42 2.77 16 29 H 0.14 1.54 7.61 -52.49 -0.40 1.14 16 30 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.10 2.12 6.70 -51.93 -0.35 1.77 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -28.29 314.44 -8.62 -36.92 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -3.01 Total: 5.38 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.45 Total: -10.01 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.16 Total: -35.64 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.84 Total: -15.11 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.97 Total: 15.58 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.24 Total: -1.87 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.29 -8.62 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.704 kcal (2) G-P(sol) polarization free energy of solvation -28.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds